Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021736.1

Orthogroup ID

OG0018095

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 852

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021736.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 485 bp

ggcaagcagcgcctgacatctctgcattcatacgagccaaggcagctgcgtatcccatatttgagatgatagagaggaacacagtgaaccaatccagtagcaaaactggccggaaactggacaaacttgaggggcatatccaattcaaggatgtatcttttagctacccatctcgtatagatgttagtatcttcaataagctcaatcttgatatccctgctgggaagattgtagcccttgtgggaggaagtggttctggcaagagtacagttatatctttgattgaacgattctatgagccacttgctggccaggtgttgttagatggaaataatataagcgaacttgacctcaaatggatgaggcaacaaattgggctggtcaatcaggagcctgctctttttgcaacaagcattagggaaaatattctctatggaaaagatgttttctggtatgtacggttaaatatttttcatatacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

160

Amino Acids

17.9

Weight (kDa)

8.87

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018095)

Species	Orthologous Gene IDs
malus_domestica	MD13G1138900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146391 RchiOBHm_Chr4g0410931 RchiOBHm_Chr5g0019431 RchiOBHm_Chr5g0083761
rosa_multiflora	Rmu_sc0019984.1_g000001 Rmu_sc0021736.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015500 Rroxscaffold_1G00064440
rosa_samantha	Rh4AG163600 Rh4CG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	108, 309
AfaI	GTAC	2 cut(s)	267, 458
AfiI	CCNNNNNNNGG	3 cut(s)	117, 147, 307
AgsI	TTSAA	3 cut(s)	147, 195, 286
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	3 cut(s)	46, 164, 201
AluI	AGCT	3 cut(s)	46, 164, 201
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	108, 309
ApeKI	GCWGC	3 cut(s)	7, 43, 46
Asp700I	GAANNNNTTC	2 cut(s)	252, 425
AspLEI	GCGC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	19, 33, 55
BccI	CCATC	2 cut(s)	177, 319
BciT130I	CCWGG	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	8, 44, 47
BlsI	GCNGC	3 cut(s)	9, 45, 48
Bme1390I	CCNGG	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 147, 307
Bse1I	ACTGG	3 cut(s)	95, 111, 122
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	156, 365
BseLI	CCNNNNNNNGG	3 cut(s)	117, 147, 307
BseNI	ACTGG	3 cut(s)	95, 111, 122
BseXI	GCAGC	3 cut(s)	19, 33, 55
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	110, 311
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	117, 147, 307
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	110, 311
BspANI	GGCC	2 cut(s)	110, 311
BspLI	GGNNCC	1 cut(s)	392
BsrI	ACTGG	3 cut(s)	95, 111, 122
BssECI	CCNNGG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	84, 270, 461
BstC8I	GCNNGC	3 cut(s)	5, 309, 395
BstF5I	GGATG	2 cut(s)	156, 365
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	9, 43, 107, 403
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	19, 33, 55
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	110, 311
BtsCI	GGATG	2 cut(s)	156, 365
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	5, 309, 395
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	266, 457
CviQI	GTAC	2 cut(s)	266, 457
EaeI	YGGCCR	2 cut(s)	108, 309
Eco130I	CCWWGG	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	8, 44, 47
FokI	GGATG	2 cut(s)	163, 372
Fsp4HI	GCNGC	3 cut(s)	8, 44, 47
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	8, 44, 47
GsaI	CCCAGC	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	110, 311
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	208, 388
Hpy8I	GTNNAC	1 cut(s)	87
HpyCH4III	ACNGT	3 cut(s)	84, 270, 461
HpyCH4V	TGCA	2 cut(s)	25, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	9, 43, 107, 403
HspAI	GCGC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	3 cut(s)	19, 33, 55
MboII	GAAGA	2 cut(s)	183, 237
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	2 cut(s)	142, 371
MluNI	TGGCCA	1 cut(s)	311
MnlI	CCTC	5 cut(s)	68, 123, 238, 356, 361
Mox20I	TGGCCA	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	252, 425
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	4 cut(s)	9, 43, 107, 403
NlaIV	GGNNCC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	2 cut(s)	252, 425
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	9, 45, 48
Psp6I	CCWGG	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	267, 458
RsaNI	GTAC	2 cut(s)	266, 457
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	3 cut(s)	8, 44, 47
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	5 cut(s)	48, 166, 203, 317, 353
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	142, 371
SspI	AATATT	2 cut(s)	426, 468
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	3 cut(s)	84, 270, 461
TasI	AATT	2 cut(s)	142, 371
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	1 cut(s)	89
TseI	GCWGC	3 cut(s)	7, 43, 46
TspDTI	ATGAA	2 cut(s)	18, 463
TspRI	CASTG	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	307
XmnI	GAANNNNTTC	2 cut(s)	252, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.