Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018095

Physical Location & Seq

Genomic Coordinates Reverse (-)

34741183 .. 34743424

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTCTATACTTGAAAACCATATTGAGGCAAGATGTTGGGTTTTTTGATAAAGAAATCAACTCTGGAGAAATTGTTGGGAGGATGTCAGGTGATACTGTGCTTATTCAAGAGGCGATGGGCGAGAAGGTAGGGAGTTTCATTCAGTTAGTTGCAACGTTCATTGGGGGCTTCGGAATAGCATTTACTAAGGGATGGCTTCTAACCCATGTCATGCTATCCTCTATTCCCCCTGTTGTCCTCACTACTGCTGTCCTGAACCATTTCATGGTGAAATTGGCGTCCCGCGGACAAGCTGCATATTCAGAAGGGGCTACTGTTGTAGAGGAGACAATTGATTCAATCAGAACTGTTGCATCATTCACAGGGGAGAAGCAGACAATATCTAACAACAATGCCTCCGTAACTAAAGCTTACAAGTTGGCTGTGCAAGAGGGTTGGGCGTCTGGTTTGGGTTTTGGTGCGGTTATGCTCATGGTATTCTGTACTTACGCTTTGGCTGTATGGTTTTATATTCGTGGAGACATAGAACTGAGGGATGTTGATTTTAGTTATCCCTCAAGACTGGATGAGCACATACTACATGGATGTTGTCTCTCAATACCTAGCGGTGCAACTGCTGCTTTGGTTGGACAGAGCGGAAGTGGTAAATCGACTATAATCTGTTTGATTGAGAGATTCTATGACCCCCGGGCTGGTGAGGTTCTTATTGATGGTGTTAATCTCAAAGAGTTCCAACTAAAATGGATCAGAGTCAGACAGAAAATACGCCTCGTGAGCCAGGAACCAGTTTTGTTTACTGGTAGCATTAAACATAACATTGCATATGGAAAGGATGATGCAACTACTGAAGAAATAAAGGCTGCTGCTGAGCTTGCCAATGCTGCAAAATTCATAGATTTACTGCCTCAGGGAATCGACACAATGGTTGGTGAGCATGGAACTCAGCTATCTGGGGGACAAAAGCAAAGAGTTGCTATAGCTAGAGCAATTCTGAAGAACCCAAGAATCCTACTGTTAGATGAAGCCACGATAGCCCACCGCTTGAGCACAGTGAGGAATGCTGACACCATTGCTGTAATACATCAAGGAACGATTGCTGAAAAAGGACCGCATTGGGAGCTAATTAGGGATCCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAAGAAACTCGCACTGTGTCAGCTTATAAGCTTGAGCTTCGAAAACTCATGGAATCTCCAGAATACCTGAAGACGGAAAAGGAGCTTTTTCGCTTCTACGGCCAGCAAAAGGCCATGGTGGAAGAGGTAGCCCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

450

Amino Acids

49.65

Weight (kDa)

7.12

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 185	1.8e-43	ABC transporter transmembrane region
ABC_tran	PF00005	210 - 359	1.2e-30	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018095)

Species	Orthologous Gene IDs
malus_domestica	MD13G1138900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146391 RchiOBHm_Chr4g0410931 RchiOBHm_Chr5g0019431 RchiOBHm_Chr5g0083761
rosa_multiflora	Rmu_sc0019984.1_g000001 Rmu_sc0021736.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015500 Rroxscaffold_1G00064440
rosa_samantha	Rh4AG163600 Rh4CG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1205, 1239
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	684
AccII	CGCG	1 cut(s)	333
AciI	CCGC	7 cut(s)	331, 333, 509, 654, 684, 1087, 1157
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	3 cut(s)	800, 1172, 1185
AcoI	YGGCCR	1 cut(s)	1312
AcsI	RAATTY	1 cut(s)	935
AcuI	CTGAAG	3 cut(s)	915, 1061, 1301
AcyI	GRCGYC	2 cut(s)	326, 488
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	5 cut(s)	72, 313, 740, 1285, 1321
AgsI	TTSAA	3 cut(s)	61, 155, 387
AjnI	CCWGG	1 cut(s)	825
Alw21I	GWGCWC	2 cut(s)	621, 1097
Alw26I	GTCTC	4 cut(s)	22, 368, 561, 644
AlwI	GGATC	3 cut(s)	800, 1172, 1185
Ama87I	CYCGRG	1 cut(s)	735
AoxI	GGCC	2 cut(s)	1312, 1323
ApeKI	GCWGC	6 cut(s)	35, 341, 665, 908, 911, 929
ApoI	RAATTY	1 cut(s)	935
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
Asp700I	GAANNNNTTC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	1154
AsuC2I	CCSGG	2 cut(s)	736, 737
AsuHPI	GGTGA	4 cut(s)	149, 328, 755, 989
AsuII	TTCGAA	1 cut(s)	1252
AvaI	CYCGRG	1 cut(s)	735
AvaII	GGWCC	1 cut(s)	1154
AxyI	CCTNAGG	1 cut(s)	954
BamHI	GGATCC	1 cut(s)	1177
BauI	CACGAG	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	1289
Bbv12I	GWGCWC	2 cut(s)	621, 1097
BbvI	GCAGC	6 cut(s)	22, 328, 652, 895, 898, 916
BccI	CCATC	4 cut(s)	157, 234, 752, 1178
BceAI	ACGGC	1 cut(s)	1327
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	1 cut(s)	827
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	2 cut(s)	736, 737
BcoDI	GTCTC	4 cut(s)	22, 368, 561, 644
BfaI	CTAG	2 cut(s)	651, 1029
BfmI	CTRYAG	1 cut(s)	1023
BisI	GCNGC	6 cut(s)	36, 342, 666, 909, 912, 930
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	6 cut(s)	37, 343, 667, 910, 913, 931
Bme1390I	CCNGG	3 cut(s)	736, 737, 827
Bme18I	GGWCC	1 cut(s)	1154
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	1154
BmiI	GGNNCC	2 cut(s)	831, 1179
BmrFI	CCNGG	3 cut(s)	736, 737, 827
BmsI	GCATC	2 cut(s)	410, 874
BpiI	GAAGAC	1 cut(s)	1289
BpmI	CTGGAG	3 cut(s)	42, 132, 1254
Bpu1102I	GCTNAGC	1 cut(s)	915
Bpu14I	TTCGAA	1 cut(s)	1252
BpuEI	CTTGAG	3 cut(s)	589, 1111, 1265
BpuMI	CCSGG	2 cut(s)	736, 737
BsaHI	GRCGYC	2 cut(s)	326, 488
BsaJI	CCNNGG	4 cut(s)	331, 734, 735, 1326
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 428, 458
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 313, 740, 1285, 1321
Bse1I	ACTGG	4 cut(s)	25, 615, 833, 850
Bse21I	CCTNAGG	1 cut(s)	954
Bse3DI	GCAATG	2 cut(s)	864, 1116
BseBI	CCWGG	1 cut(s)	827
BseDI	CCNNGG	4 cut(s)	331, 734, 735, 1326
BseGI	GGATG	7 cut(s)	18, 135, 245, 589, 619, 638, 886
BseLI	CCNNNNNNNGG	5 cut(s)	72, 313, 740, 1285, 1321
BseMI	GCAATG	2 cut(s)	864, 1116
BseMII	CTCAG	4 cut(s)	569, 906, 968, 1004
BseNI	ACTGG	4 cut(s)	25, 615, 833, 850
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	6 cut(s)	22, 328, 652, 895, 898, 916
BsgI	GTGCAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	1314, 1325
BsiHKAI	GWGCWC	2 cut(s)	621, 1097
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	2 cut(s)	313, 1017
BslI	CCNNNNNNNGG	5 cut(s)	72, 313, 740, 1285, 1321
BsmAI	GTCTC	4 cut(s)	22, 368, 561, 644
BsmFI	GGGAC	2 cut(s)	313, 1017
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	2 cut(s)	1314, 1325
BsoBI	CYCGRG	1 cut(s)	735
Bsp119I	TTCGAA	1 cut(s)	1252
Bsp1286I	GDGCHC	2 cut(s)	621, 1097
Bsp143I	GATC	3 cut(s)	15, 792, 1177
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	1 cut(s)	1326
BspACI	CCGC	7 cut(s)	331, 333, 509, 654, 684, 1087, 1157
BspANI	GGCC	2 cut(s)	1314, 1325
BspCNI	CTCAG	4 cut(s)	570, 907, 967, 1003
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	831, 1179
BspPI	GGATC	3 cut(s)	800, 1172, 1185
BspT104I	TTCGAA	1 cut(s)	1252
BsrBI	CCGCTC	1 cut(s)	684
BsrDI	GCAATG	2 cut(s)	864, 1116
BsrI	ACTGG	4 cut(s)	25, 615, 833, 850
BssECI	CCNNGG	4 cut(s)	331, 734, 735, 1326
BssMI	GATC	3 cut(s)	15, 792, 1177
BssNI	GRCGYC	2 cut(s)	326, 488
BssSI	CACGAG	1 cut(s)	818
BssT1I	CCWWGG	1 cut(s)	1326
Bst2BI	CACGAG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	827
Bst4CI	ACNGT	6 cut(s)	145, 364, 397, 1062, 1099, 1228
Bst6I	CTCTTC	1 cut(s)	1329
BstACI	GRCGYC	2 cut(s)	326, 488
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBI	TTCGAA	1 cut(s)	1252
BstC8I	GCNNGC	3 cut(s)	921, 1199, 1316
BstDEI	CTNAG	5 cut(s)	234, 578, 915, 954, 990
BstDSI	CCRYGG	2 cut(s)	331, 1326
BstF5I	GGATG	7 cut(s)	18, 135, 245, 589, 619, 638, 886
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	18, 795, 1180
BstMAI	GTCTC	4 cut(s)	22, 368, 561, 644
BstMBI	GATC	3 cut(s)	15, 792, 1177
BstMWI	GCNNNNNNNGC	7 cut(s)	665, 822, 920, 929, 1079, 1165, 1311
BstNI	CCWGG	1 cut(s)	827
BstSCI	CCNGG	3 cut(s)	734, 735, 825
BstSFI	CTRYAG	1 cut(s)	1023
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	6 cut(s)	22, 328, 652, 895, 898, 916
BstV2I	GAAGAC	1 cut(s)	1289
BstX2I	RGATCY	1 cut(s)	1177
BstYI	RGATCY	1 cut(s)	1177
Bsu36I	CCTNAGG	1 cut(s)	954
BsuRI	GGCC	2 cut(s)	1314, 1325
BtgI	CCRYGG	2 cut(s)	331, 1326
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	7 cut(s)	18, 135, 245, 589, 619, 638, 886
BtsIMutI	CAGTG	3 cut(s)	18, 1104, 1224
Cac8I	GCNNGC	3 cut(s)	921, 1199, 1316
Cfr13I	GGNCC	1 cut(s)	1154
Cfr42I	CCGCGG	1 cut(s)	334
Cfr9I	CCCGGG	1 cut(s)	735
CseI	GACGC	2 cut(s)	315, 477
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	8 cut(s)	254, 259, 313, 520, 629, 983, 1261, 1327
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	5 cut(s)	234, 578, 915, 954, 990
DpnI	GATC	3 cut(s)	17, 794, 1179
DpnII	GATC	3 cut(s)	15, 792, 1177
EaeI	YGGCCR	1 cut(s)	1312
Eam1104I	CTCTTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1329
Eco130I	CCWWGG	1 cut(s)	1326
Eco47I	GGWCC	1 cut(s)	1154
Eco57I	CTGAAG	3 cut(s)	915, 1061, 1301
Eco81I	CCTNAGG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	825
EcoT14I	CCWWGG	1 cut(s)	1326
ErhI	CCWWGG	1 cut(s)	1326
FaeI	CATG	8 cut(s)	257, 262, 316, 523, 632, 986, 1264, 1330
FaqI	GGGAC	2 cut(s)	313, 1017
FatI	CATG	8 cut(s)	253, 258, 312, 519, 628, 982, 1260, 1326
FauI	CCCGC	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	36, 342, 666, 909, 912, 930
FokI	GGATG	7 cut(s)	25, 142, 252, 596, 626, 645, 893
Fsp4HI	GCNGC	6 cut(s)	36, 342, 666, 909, 912, 930
FspBI	CTAG	2 cut(s)	651, 1029
GluI	GCNGC	6 cut(s)	36, 342, 666, 909, 912, 930
GsuI	CTGGAG	3 cut(s)	42, 132, 1254
HaeIII	GGCC	2 cut(s)	1314, 1325
HapII	CCGG	1 cut(s)	736
HgaI	GACGC	2 cut(s)	315, 477
Hin1I	GRCGYC	2 cut(s)	326, 488
Hin1II	CATG	8 cut(s)	257, 262, 316, 523, 632, 986, 1264, 1330
HindIII	AAGCTT	2 cut(s)	456, 1241
HinfI	GANTC	6 cut(s)	383, 723, 798, 960, 1053, 1265
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	4 cut(s)	149, 328, 755, 989
Hpy166II	GTNNAC	1 cut(s)	843
Hpy188I	TCNGA	6 cut(s)	221, 352, 392, 797, 803, 1041
Hpy188III	TCNNGA	7 cut(s)	111, 155, 301, 606, 820, 1181, 1271
Hpy8I	GTNNAC	1 cut(s)	843
HpyAV	CCTTC	2 cut(s)	166, 347
HpyCH4III	ACNGT	6 cut(s)	145, 364, 397, 1062, 1099, 1228
HpyCH4IV	ACGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	7 cut(s)	665, 822, 920, 929, 1079, 1165, 1311
HpyF3I	CTNAG	5 cut(s)	234, 578, 915, 954, 990
HpySE526I	ACGT	1 cut(s)	203
Hsp92I	GRCGYC	2 cut(s)	326, 488
Hsp92II	CATG	8 cut(s)	257, 262, 316, 523, 632, 986, 1264, 1330
Ksp22I	TGATCA	1 cut(s)	15
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	15, 792, 1177
LmnI	GCTCC	3 cut(s)	1165, 1187, 1294
Lsp1109I	GCAGC	6 cut(s)	22, 328, 652, 895, 898, 916
LweI	GCATC	2 cut(s)	410, 874
MaeI	CTAG	2 cut(s)	651, 1029
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	3 cut(s)	17, 794, 1179
MbiI	CCGCTC	1 cut(s)	684
MboI	GATC	3 cut(s)	15, 792, 1177
MboII	GAAGA	4 cut(s)	908, 1054, 1294, 1346
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	1177
MhlI	GDGCHC	2 cut(s)	621, 1097
MluCI	AATT	6 cut(s)	117, 320, 378, 935, 1035, 1170
MlyI	GAGTC	1 cut(s)	807
MmeI	TCCRAC	2 cut(s)	655, 805
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	3 cut(s)	765, 855, 1351
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	3 cut(s)	736, 737, 827
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	1111
MvaI	CCWGG	1 cut(s)	827
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	7 cut(s)	665, 822, 920, 929, 1079, 1165, 1311
NciI	CCSGG	2 cut(s)	736, 737
NcoI	CCATGG	1 cut(s)	1326
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	3 cut(s)	15, 792, 1177
NlaIII	CATG	8 cut(s)	257, 262, 316, 523, 632, 986, 1264, 1330
NlaIV	GGNNCC	2 cut(s)	831, 1179
NspV	TTCGAA	1 cut(s)	1252
PctI	GAATGC	1 cut(s)	1111
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	5 cut(s)	383, 723, 960, 1053, 1265
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	6 cut(s)	37, 343, 667, 910, 913, 931
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PsiI	TTATAA	2 cut(s)	1205, 1239
Psp1406I	AACGTT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	825
PspN4I	GGNNCC	2 cut(s)	831, 1179
PspPI	GGNCC	1 cut(s)	1154
PsuI	RGATCY	1 cut(s)	1177
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SacII	CCGCGG	1 cut(s)	334
SaqAI	TTAA	3 cut(s)	765, 855, 1351
SatI	GCNGC	6 cut(s)	36, 342, 666, 909, 912, 930
Sau3AI	GATC	3 cut(s)	15, 792, 1177
Sau96I	GGNCC	1 cut(s)	1154
SchI	GAGTC	1 cut(s)	807
ScrFI	CCNGG	3 cut(s)	736, 737, 827
SduI	GDGCHC	2 cut(s)	621, 1097
SfaNI	GCATC	2 cut(s)	410, 874
SfcI	CTRYAG	1 cut(s)	1023
Sfr303I	CCGCGG	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	1252
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	1154
SmaI	CCCGGG	1 cut(s)	737
SmlI	CTYRAG	3 cut(s)	604, 1090, 1244
SmoI	CTYRAG	3 cut(s)	604, 1090, 1244
Sse9I	AATT	6 cut(s)	117, 320, 378, 935, 1035, 1170
SsiI	CCGC	7 cut(s)	331, 333, 509, 654, 684, 1087, 1157
SspMI	CTAG	2 cut(s)	651, 1029
StyD4I	CCNGG	3 cut(s)	734, 735, 825
StyI	CCWWGG	1 cut(s)	1326
TaaI	ACNGT	6 cut(s)	145, 364, 397, 1062, 1099, 1228
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	698, 963, 1252
TasI	AATT	6 cut(s)	117, 320, 378, 935, 1035, 1170
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	5 cut(s)	383, 723, 960, 1053, 1265
Tru1I	TTAA	3 cut(s)	765, 855, 1351
Tru9I	TTAA	3 cut(s)	765, 855, 1351
TscAI	CASTG	3 cut(s)	25, 1104, 1231
TseI	GCWGC	6 cut(s)	35, 341, 665, 908, 911, 929
TspDTI	ATGAA	5 cut(s)	175, 196, 301, 928, 1083
TspGWI	ACGGA	2 cut(s)	436, 1301
TspMI	CCCGGG	1 cut(s)	735
TspRI	CASTG	3 cut(s)	25, 1104, 1231
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	1154
XapI	RAATTY	1 cut(s)	935
XmaI	CCCGGG	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	2 cut(s)	651, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.