MD13G1152400.v1.1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
11939838 .. 11940317
480 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1152400.v1.1.491

Sequence Viewer

Length: 228 bp
ATGAGGAGTTTATTCCAAAATTTGGTAGGCTACTTGTTTTTTGTTAGCTGCTCATCAGCCAAAGATGTTCCAGCTTTTTTTACTTTCGGTGATTCCATTGCTGAGGTATTGGGTTTAAAAAATTTCACCCCTCCTTACTTGGCACCAACTACAGTTGGAGACATGCTTCTACAGGGTGTCAATTATGCTTCTGCTGCTTCGGGAATTTTCAGTATCACTGGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.01

Weight (kDa)

4.68

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccB7I CCANNNNNTGG 1 cut(s) 22
AcsI RAATTY 3 cut(s) 19, 121, 204
AfiI CCNNNNNNNGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 48, 74
AluI AGCT 2 cut(s) 48, 74
Alw26I GTCTC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 48, 194
ApoI RAATTY 3 cut(s) 19, 121, 204
AsuHPI GGTGA 2 cut(s) 101, 118
BanI GGYRCC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 35, 181
BcoDI GTCTC 1 cut(s) 153
BfmI CTRYAG 2 cut(s) 150, 170
BisI GCNGC 2 cut(s) 49, 195
BlsI GCNGC 2 cut(s) 50, 196
BmiI GGNNCC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 35, 181
BshNI GGYRCC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 150, 170
BstV1I GCAGC 2 cut(s) 35, 181
BtsIMutI CAGTG 1 cut(s) 216
CviAII CATG 1 cut(s) 163
CviJI RGCY 4 cut(s) 30, 48, 59, 74
CviKI_1 RGCY 4 cut(s) 30, 48, 59, 74
DdeI CTNAG 1 cut(s) 102
DraI TTTAAA 1 cut(s) 117
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 164, 186
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 49, 195
Fsp4HI GCNGC 2 cut(s) 49, 195
GluI GCNGC 2 cut(s) 49, 195
Hin1II CATG 1 cut(s) 166
HinfI GANTC 1 cut(s) 92
HphI GGTGA 2 cut(s) 101, 118
Hpy188III TCNNGA 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 166
LpnPI CCDG 3 cut(s) 84, 158, 204
Lsp1109I GCAGC 2 cut(s) 35, 181
MluCI AATT 4 cut(s) 19, 121, 181, 204
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 2 cut(s) 97, 141
MseI TTAA 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 194
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 144
NspI RCATGY 1 cut(s) 166
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 2 cut(s) 50, 196
PspN4I GGNNCC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 2 cut(s) 49, 195
SetI ASST 3 cut(s) 50, 76, 108
SfcI CTRYAG 2 cut(s) 150, 170
SgeI CNNG 6 cut(s) 46, 83, 151, 175, 185, 213
Sse9I AATT 4 cut(s) 19, 121, 181, 204
TaaI ACNGT 1 cut(s) 154
TasI AATT 4 cut(s) 19, 121, 181, 204
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 1 cut(s) 223
TseI GCWGC 2 cut(s) 48, 194
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 22
XapI RAATTY 3 cut(s) 19, 121, 204
XceI RCATGY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.