MD13G1219400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012196
Physical Location & Seq
Reverse (-)
21190952 .. 21194167
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1219400.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGATACGGATGCTAAGGATGCTTGTACTACTAATGGGTGTAAAACTGAGGTGACGTTGGATACCGGAGACTCTCAGAAAGTTGAGGAAAATGTTAATGGAGATGAAGATAGTGAGTCTAATTCTTTGTTGCCTCCTCGGAGAGGGGGTATGTCGAGGAAATCGAATAAAACTCGGCGAAAAGTGCAGTGGAATGATAGGAATGGGAATAAGCTTGTTGAGGTCCTGGAATTCGAACCGAGCGATGTTAGTGATTCTGATGATGAAGATGCAGATTCTTGCATATGTATTATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.96

Weight (kDa)

4.34

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33390 AT2G33390
fragaria_vesca FvH4_4g04340 FvH4_4g04340
malus_domestica MD13G1219400.v1.1 MD16G1224800.v1.1
prunus_persica Prupe.1G046100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0394791 RchiOBHm_Chr4g0394821
rosa_laevigata RLG00000009660
rosa_multiflora Rmu_sc0005356.1_g000001
rosa_roxburghii Rroxscaffold_5G00339830
rosa_rugosa Rorug03G0361300.1 Rorug03G0361400.1
rosa_samantha Rh4AG055200 Rh4BG053100 Rh4CG060000 Rh4DG051700
rosa_wichuraiana Rw4G004410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 230
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 143
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 10, 259
Bpu10I CCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 16, 25
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 39, 89
BseRI GAGGAG 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 40, 88
BspT104I TTCGAA 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 15, 48, 75
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 16, 25
BstMAI GTCTC 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 20, 184
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BsuI GTATCC 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 16, 25
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 1 cut(s) 214
CviKI_1 RGCY 1 cut(s) 214
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 3 cut(s) 15, 48, 75
Eco47I GGWCC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 225
FaiI YATR 4 cut(s) 152, 284, 286, 296
FauNDI CATATG 1 cut(s) 284
FokI GGATG 2 cut(s) 23, 32
HapII CCGG 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 4 cut(s) 71, 116, 254, 275
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 3 cut(s) 78, 141, 259
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 187, 272, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 184
HpyF3I CTNAG 3 cut(s) 15, 48, 75
HpySE526I ACGT 1 cut(s) 56
LpnPI CCDG 3 cut(s) 79, 212, 239
LweI GCATC 2 cut(s) 10, 259
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 2 cut(s) 119, 278
MluCI AATT 2 cut(s) 121, 230
MlyI GAGTC 2 cut(s) 65, 125
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 7 cut(s) 43, 79, 137, 144, 147, 150, 214
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 20, 184
NdeI CATATG 1 cut(s) 284
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 52
NspV TTCGAA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 240
PfeI GAWTC 2 cut(s) 254, 275
PfoI TCCNGGA 1 cut(s) 225
PleI GAGTC 2 cut(s) 65, 124
PpsI GAGTC 2 cut(s) 65, 124
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 2 cut(s) 65, 125
ScrFI CCNGG 1 cut(s) 227
SetI ASST 4 cut(s) 54, 59, 216, 225
SfaNI GCATC 2 cut(s) 10, 259
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 223
Sse9I AATT 2 cut(s) 121, 230
StyD4I CCNGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 155, 164, 234
TasI AATT 2 cut(s) 121, 230
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 2 cut(s) 254, 275
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 120, 279
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.