RLG00000009660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012196
Physical Location & Seq
Forward (+)
56137510 .. 56137974
465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009660

Sequence Viewer

Length: 390 bp
ATGGGCGTTGACTTTCGCGGTAACGGCGATTCACGTCCCCGGCGACGGCAAAATTTGACGTGTTTCCAGCTGGATTCTGATCACTGGGGGTTTAAGCTGGCTGAGGGGTTGAGGTCTTTGGAGTCTTGTTTGTTGTTAATGGAGACGGATGAGAAGGAAAAAGTGCAAAATGGAGGTGAAAATGAGAGCTTGAGTGGTCGTGGTGGTACTGGAGAGAGTGACAAGGTTGAGGAACAGGGGAATGGGGATGAAGATAGTGAGTCAAATTCGTTGTTACCGCCGAGGAAAGGTGGAATGTCGAGGAAGACGAATAAGACGAGGCGAAAAGTGCAGTGGAATGATAGGAATGGGAATAAGCTTGTTGAGGTGTTGGAGTATGAACCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.57

Weight (kDa)

5.57

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33390 AT2G33390
fragaria_vesca FvH4_4g04340 FvH4_4g04340
malus_domestica MD13G1219400.v1.1 MD16G1224800.v1.1
prunus_persica Prupe.1G046100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0394791 RchiOBHm_Chr4g0394821
rosa_laevigata RLG00000009660
rosa_multiflora Rmu_sc0005356.1_g000001
rosa_roxburghii Rroxscaffold_5G00339830
rosa_rugosa Rorug03G0361300.1 Rorug03G0361400.1
rosa_samantha Rh4AG055200 Rh4BG053100 Rh4CG060000 Rh4DG051700
rosa_wichuraiana Rw4G004410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 18, 278
AcsI RAATTY 2 cut(s) 52, 265
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 45, 287
AflIII ACRYGT 1 cut(s) 59
AjiI CACGTC 2 cut(s) 35, 60
AluBI AGCT 4 cut(s) 70, 97, 189, 358
AluI AGCT 4 cut(s) 70, 97, 189, 358
Alw26I GTCTC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 52, 265
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 311
BbvCI CCTCAGC 1 cut(s) 102
BceAI ACGGC 2 cut(s) 40, 62
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 40
BmgBI CACGTC 2 cut(s) 35, 60
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 38, 281, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 287
Bse1I ACTGG 2 cut(s) 89, 214
Bse8I GATNNNNATC 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 38, 281, 383
BseGI GGATG 2 cut(s) 154, 253
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 45, 287
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 89, 214
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 45, 287
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 18, 278
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 18
BsrI ACTGG 2 cut(s) 89, 214
BssECI CCNNGG 3 cut(s) 38, 281, 383
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 154, 253
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 24, 328
BstSCI CCNGG 1 cut(s) 38
BstUI CGCG 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 311
BtrI CACGTC 2 cut(s) 35, 60
BtsCI GGATG 2 cut(s) 154, 253
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 82, 338
Cac8I GCNNGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 207
CviJI RGCY 5 cut(s) 70, 97, 101, 189, 358
CviKI_1 RGCY 5 cut(s) 70, 97, 101, 189, 358
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 137
FaiI YATR 1 cut(s) 378
FaqI GGGAC 1 cut(s) 21
FbaI TGATCA 1 cut(s) 79
FokI GGATG 2 cut(s) 161, 260
GsuI CTGGAG 1 cut(s) 231
HapII CCGG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 4 cut(s) 29, 74, 122, 260
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 2 cut(s) 34, 59
HpyCH4V TGCA 2 cut(s) 166, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 328
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 34, 59
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 53, 56, 70, 80, 83, 195, 221
MaeII ACGT 2 cut(s) 34, 59
MaeIII GTNAC 3 cut(s) 20, 218, 273
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 263, 316
MluCI AATT 2 cut(s) 52, 265
MlyI GAGTC 2 cut(s) 131, 269
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 8 cut(s) 97, 105, 167, 223, 276, 294, 312, 358
MseI TTAA 2 cut(s) 93, 137
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 24, 328
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 3 cut(s) 40, 305, 314
PfeI GAWTC 2 cut(s) 29, 74
PleI GAGTC 2 cut(s) 130, 268
PpsI GAGTC 2 cut(s) 130, 268
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 93, 137
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 2 cut(s) 131, 269
ScrFI CCNGG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 2 cut(s) 52, 265
SsiI CCGC 2 cut(s) 18, 278
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 383
TaiI ACGT 2 cut(s) 37, 62
TaqI TCGA 1 cut(s) 299
TasI AATT 2 cut(s) 52, 265
TfiI GAWTC 2 cut(s) 29, 74
Tru1I TTAA 2 cut(s) 93, 137
Tru9I TTAA 2 cut(s) 93, 137
TscAI CASTG 2 cut(s) 89, 338
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 89, 338
XapI RAATTY 2 cut(s) 52, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.