RchiOBHm_Chr4g0394821

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
10578776 .. 10580023
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36729

Sequence Viewer

Length: 261 bp
ATGGAGACGGATGAGAAGGAGAAAGTGCAAAATGGAGGTGAAAATGAGAGCTTGAGTGGTGGTGGTGGTACTGGAGAGAGTGAAAAGGTTGAGGAACAGGGGAATGGGGATGAAGATAGTGAGTCAAATTCGTTGTTGCCGCCGAGGAAAGGTGGAATGTCGAGGAAGACGAATAAGACGAGGCGAAAAGTGCAGTGGAATGATAGGAATGGGAATAAGCTTGTTGAGGTGTTAGAGTATGAGCCAAGGGGTCTAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.49

Weight (kDa)

4.93

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012196)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 51, 220
AluI AGCT 2 cut(s) 51, 220
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 173
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 143, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 143, 245
BseGI GGATG 2 cut(s) 16, 115
BseLI CCNNNNNNNGG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 149
BspACI CCGC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 143, 245
BssT1I CCWWGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 16, 115
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 173
BtsCI GGATG 2 cut(s) 16, 115
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 200
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 3 cut(s) 51, 220, 244
CviKI_1 RGCY 3 cut(s) 51, 220, 244
CviQI GTAC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaiI YATR 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 23, 122
Fsp4HI GCNGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 28, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 57, 83
MboII GAAGA 2 cut(s) 125, 178
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 6 cut(s) 29, 85, 138, 156, 174, 220
MwoI GCNNNNNNNGC 1 cut(s) 190
NmeAIII GCCGAG 1 cut(s) 168
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 176
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SatI GCNGC 1 cut(s) 140
SchI GAGTC 1 cut(s) 131
SetI ASST 6 cut(s) 40, 53, 90, 154, 222, 231
SgeI CNNG 7 cut(s) 64, 84, 110, 156, 174, 192, 233
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 1 cut(s) 127
SsiI CCGC 1 cut(s) 140
StyI CCWWGG 1 cut(s) 245
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 142
TscAI CASTG 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 200
XapI RAATTY 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.