MD13G1233500.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015919
Physical Location & Seq
Reverse (-)
23317934 .. 23320124
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1233500.v1.1.491

Sequence Viewer

Length: 234 bp
ATGGGAAAACCAAAAAGAAAGATGATAAGAACTCGTTTGGTTTGGTTCGGTGTTGGGTTTTCGCAGACTGGAGCTGCAATCTCTCACCTCGTCTGGAAAGATCTTCTCGTCGACCGCTTCGCTCTTTCCTCCGATGTGAAGCAAAAGTTTGATGCTCTTGAAGGTAGACTTGTGAACCTCGAGCGTTCTTTATCACCAGACCCGAATCATCATCCCGCTCGGGTTGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.77

Weight (kDa)

9.98

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07568
fragaria_vesca FvH4_4g06110
malus_domestica MD13G1233500.v1.1 MD16G1238500.v1.1
prunus_persica Prupe.1G064700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0397691
rosa_multiflora Rmu_sc0002729.1_g000014 Rmu_sc0021014.1_g000001
rosa_roxburghii Rroxscaffold_5G00342500
rosa_rugosa Rorug04G0003300
rosa_samantha Rh4AG079900 Rh4CG085900 Rh4DG073100 Rh7DG308600
rosa_wichuraiana Rw4G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 218
AccI GTMKAC 2 cut(s) 111, 166
AciI CCGC 2 cut(s) 115, 216
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Ama87I CYCGRG 2 cut(s) 179, 219
ApeKI GCWGC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 77, 186
AvaI CYCGRG 2 cut(s) 179, 219
BbvI GCAGC 1 cut(s) 61
BfaI CTAG 1 cut(s) 232
BglII AGATCT 1 cut(s) 100
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmeT110I CYCGRG 2 cut(s) 179, 219
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 179, 219
BsoBI CYCGRG 2 cut(s) 179, 219
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 115, 216
BsrBI CCGCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 73
BssMI GATC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtsCI GGATG 1 cut(s) 211
CviJI RGCY 1 cut(s) 74
CviKI_1 RGCY 1 cut(s) 74
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco88I CYCGRG 2 cut(s) 179, 219
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FauI CCCGC 1 cut(s) 223
FblI GTMKAC 2 cut(s) 111, 166
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 232
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 90
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 205
HphI GGTGA 2 cut(s) 77, 186
Hpy166II GTNNAC 3 cut(s) 112, 167, 175
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 94, 158
Hpy8I GTNNAC 3 cut(s) 112, 167, 175
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 77
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 54, 79, 210
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 232
MalI GATC 1 cut(s) 102
MbiI CCGCTC 1 cut(s) 218
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 95
MflI RGATCY 1 cut(s) 100
MnlI CCTC 4 cut(s) 98, 139, 188, 220
NdeII GATC 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 179
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 76
PspXI VCTCGAGB 1 cut(s) 179
PsuI RGATCY 1 cut(s) 100
SalI GTCGAC 1 cut(s) 110
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 100
SetI ASST 4 cut(s) 76, 90, 166, 180
SfaNI GCATC 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 2 cut(s) 115, 216
SspMI CTAG 1 cut(s) 232
TaqI TCGA 2 cut(s) 111, 180
TfiI GAWTC 1 cut(s) 205
TseI GCWGC 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 2 cut(s) 111, 166
XspI CTAG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.