MD16G1238500.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015919
Physical Location & Seq
Reverse (-)
25171642 .. 25174517
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1238500.v1.1.491

Sequence Viewer

Length: 213 bp
ATGATGCGAACTCGTTTGGTTTGGTTCGGTGTTGGGTTTTCGCTGACAGGAGCTGCAATTTCTCACCTCGTCTGGAAAGATCTTCTCGTCGACCGTTTCGCTCTTTCCTCCGATGTGAAGCAAAAGTTTGATGCTCTTGAAGGTAGAATTGTGAACCTTGAGCGTTCTTTGTCACCAGACCCGAATCATCATCCCGCTCAGGTTGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.92

Weight (kDa)

6.25

Isoelectric Point (pI)

23.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07568
fragaria_vesca FvH4_4g06110
malus_domestica MD13G1233500.v1.1 MD16G1238500.v1.1
prunus_persica Prupe.1G064700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0397691
rosa_multiflora Rmu_sc0002729.1_g000014 Rmu_sc0021014.1_g000001
rosa_roxburghii Rroxscaffold_5G00342500
rosa_rugosa Rorug04G0003300
rosa_samantha Rh4AG079900 Rh4CG085900 Rh4DG073100 Rh7DG308600
rosa_wichuraiana Rw4G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 195
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 56, 165
BbvI GCAGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 211
BglII AGATCT 1 cut(s) 79
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmsI GCATC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 179
BseGI GGATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 197
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMCI CGRYCG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtsCI GGATG 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 53
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 211
GluI GCNGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 184
HphI GGTGA 2 cut(s) 56, 165
Hpy166II GTNNAC 2 cut(s) 91, 154
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 73, 137
Hpy8I GTNNAC 2 cut(s) 91, 154
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 198
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 33, 58, 185, 189
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 171
MalI GATC 1 cut(s) 81
MbiI CCGCTC 1 cut(s) 197
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 79
MluCI AATT 2 cut(s) 57, 147
MnlI CCTC 3 cut(s) 77, 118, 199
NdeII GATC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 79
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 79
SetI ASST 5 cut(s) 55, 69, 145, 159, 204
SfaNI GCATC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 57, 147
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 57, 147
TfiI GAWTC 1 cut(s) 184
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.