Rroxscaffold_5G00342500

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015919
Physical Location & Seq
Reverse (-)
11462626 .. 11465736
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342500.1

Sequence Viewer

Length: 273 bp
ATGATGAGAGCTCGTTTGCTCTGGTTCGCTCTCGGCTTCTCCTCCACCGGAGCTGCAATTTCTCACCTGATTTGGAGAGATCTTATTGTCGACCGCACCGCTCTTTCCTCTGATGTGATGCGAAAGTTTGCTGCTCTTGAAAGCAGAATCGTGAACCTGGAGCATTCTTATCAGAATCCCAATCCGGCTGCTCAGGTATGTCAAAATGTTCATGCCACAGCAACCCCGGCCGAGAAGACCAGAGGACTGGAGCAAGATGATGATACAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.06

Weight (kDa)

5.86

Isoelectric Point (pI)

17.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07568
fragaria_vesca FvH4_4g06110
malus_domestica MD13G1233500.v1.1 MD16G1238500.v1.1
prunus_persica Prupe.1G064700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0397691
rosa_multiflora Rmu_sc0002729.1_g000014 Rmu_sc0021014.1_g000001
rosa_roxburghii Rroxscaffold_5G00342500
rosa_rugosa Rorug04G0003300
rosa_samantha Rh4AG079900 Rh4CG085900 Rh4DG073100 Rh7DG308600
rosa_wichuraiana Rw4G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 94, 99
AcoI YGGCCR 1 cut(s) 228
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 2 cut(s) 11, 53
AluI AGCT 2 cut(s) 11, 53
Alw21I GWGCWC 1 cut(s) 13
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 53, 131, 188
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 40, 118, 175
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 1 cut(s) 227
BglII AGATCT 1 cut(s) 79
BisI GCNGC 3 cut(s) 54, 132, 189
BlsI GCNGC 3 cut(s) 55, 133, 190
Bme1390I CCNGG 2 cut(s) 158, 227
BmrFI CCNGG 2 cut(s) 158, 227
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 2 cut(s) 179, 269
Bpu10I CCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 31
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 40, 118, 175
Bsh1285I CGRYCG 2 cut(s) 94, 231
BshFI GGCC 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 94, 231
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 3 cut(s) 48, 185, 227
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 94, 99
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMCI CGRYCG 2 cut(s) 94, 231
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 156, 225
BstV1I GCAGC 3 cut(s) 40, 118, 175
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 79
BstZI CGGCCG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 230
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 11, 36, 53, 188, 230
CviKI_1 RGCY 5 cut(s) 11, 36, 53, 188, 230
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 228
EagI CGGCCG 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 11
EclXI CGGCCG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 13
Eco52I CGGCCG 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 1 cut(s) 215
FaiI YATR 2 cut(s) 199, 213
FatI CATG 1 cut(s) 211
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 54, 132, 189
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 54, 132, 189
GluI GCNGC 3 cut(s) 54, 132, 189
GsuI CTGGAG 2 cut(s) 179, 269
HaeIII GGCC 1 cut(s) 230
HapII CCGG 3 cut(s) 48, 185, 227
Hin1II CATG 1 cut(s) 215
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 147, 175
HpaII CCGG 3 cut(s) 48, 185, 227
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 91, 154
Hpy188I TCNGA 2 cut(s) 112, 174
Hpy188III TCNNGA 2 cut(s) 137, 151
Hpy8I GTNNAC 2 cut(s) 91, 154
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 50, 160, 250
Lsp1109I GCAGC 3 cut(s) 40, 118, 175
LweI GCATC 1 cut(s) 108
MalI GATC 1 cut(s) 81
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 247
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 57
MnlI CCTC 3 cut(s) 52, 118, 236
MspI CCGG 3 cut(s) 48, 185, 227
MspR9I CCNGG 2 cut(s) 158, 227
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 227
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 215
NmeAIII GCCGAG 2 cut(s) 12, 256
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 147, 175
PkrI GCNGC 3 cut(s) 55, 133, 190
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 79
SacI GAGCTC 1 cut(s) 13
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 3 cut(s) 54, 132, 189
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 158, 227
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 13, 55, 69, 159, 198
SfaNI GCATC 1 cut(s) 108
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 94, 99
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 156, 225
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 57
TfiI GAWTC 2 cut(s) 147, 175
TseI GCWGC 3 cut(s) 53, 131, 188
TspDTI ATGAA 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.