Rorug04G0003300

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015919
Physical Location & Seq
Forward (+)
647444 .. 647695
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0003300.1

Sequence Viewer

Length: 252 bp
ATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCATGGTGAGGACATGAAGACTACTTCCGAGGGAGGTGGCGGCTACAGCTACTACTCTGGTGGATGGGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGCTCGACCCTATTTTCCCCCGAAAGTGTCTGCGACAGAAGAGACAAAGCTGTAAAAATTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.22

Weight (kDa)

5.26

Isoelectric Point (pI)

66.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07568
fragaria_vesca FvH4_4g06110
malus_domestica MD13G1233500.v1.1 MD16G1238500.v1.1
prunus_persica Prupe.1G064700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0397691
rosa_multiflora Rmu_sc0002729.1_g000014 Rmu_sc0021014.1_g000001
rosa_roxburghii Rroxscaffold_5G00342500
rosa_rugosa Rorug04G0003300
rosa_samantha Rh4AG079900 Rh4CG085900 Rh4DG073100 Rh7DG308600
rosa_wichuraiana Rw4G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 3 cut(s) 96, 126, 247
AcsI RAATTY 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 3 cut(s) 105, 160, 227
AluI AGCT 3 cut(s) 105, 160, 227
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 240
ApoI RAATTY 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 14, 74
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 3 cut(s) 97, 127, 247
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 3 cut(s) 98, 128, 248
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 80
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseAI TCCGGA 1 cut(s) 240
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 19
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 3 cut(s) 96, 126, 247
BspCNI CTCAG 1 cut(s) 174
BspEI TCCGGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 48, 137
Bst6I CTCTTC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 44
CviAII CATG 3 cut(s) 55, 59, 70
CviJI RGCY 9 cut(s) 99, 105, 129, 141, 160, 165, 180, 227, 246
CviKI_1 RGCY 9 cut(s) 99, 105, 129, 141, 160, 165, 180, 227, 246
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 3 cut(s) 58, 62, 73
FaiI YATR 3 cut(s) 56, 60, 71
FatI CATG 3 cut(s) 54, 58, 69
Fnu4HI GCNGC 3 cut(s) 97, 127, 247
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 97, 127, 247
GluI GCNGC 3 cut(s) 97, 127, 247
HapII CCGG 1 cut(s) 241
Hin1II CATG 3 cut(s) 58, 62, 73
HpaII CCGG 1 cut(s) 241
HphI GGTGA 2 cut(s) 14, 74
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 48, 137
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 3 cut(s) 58, 62, 73
Kpn2I TCCGGA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 3 cut(s) 11, 38, 99
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 29, 85, 228
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 234
MnlI CCTC 5 cut(s) 5, 58, 79, 83, 176
Mph1103I ATGCAT 1 cut(s) 60
MroI TCCGGA 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 58, 62, 73
NlaIV GGNNCC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 39
PkrI GCNGC 3 cut(s) 98, 128, 248
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 3 cut(s) 97, 127, 247
Sau3AI GATC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 162
SetI ASST 4 cut(s) 94, 107, 162, 229
SfcI CTRYAG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 234
SsiI CCGC 3 cut(s) 96, 126, 247
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 48, 137
TaqI TCGA 1 cut(s) 182
TasI AATT 1 cut(s) 234
TauI GCSGC 3 cut(s) 99, 129, 249
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 51
XapI RAATTY 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.