MD13G1235800.v1.1

Galacturonokinase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
23805362 .. 23822260
16899 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1235800.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGGCTGGATCGTCTTGGCCTTGTGAAACTCAGTTAAATGGACTTAGACAGATAGTTTCAGAAATGGCTGGGACAGGTATGAAAGAAGTTCGGGTCGTTGTTTCTCCTTATCGGATTTGTCCATTGGGAGCTCATATTGATCATCAGGGCGGGACTGTATCAGCTATGGCAATTAACAAGGGGATACTTCTAGGTTTTGTTCCTTCTGGTGACACTCAGGTTATACTGCGTTCAGGACAGTTTAAAGGTGAATGTAGGTTCAGAGTTGATGAAGTTCAATTCCCTTGGAAGAGTGCAACTGTTGCTTCCAAAACAGGTGAGGAAAGCAAATGGGGAAGTTATGCAAGAGGAGCCTTATATGCATTACAGAGTAGACAAATCTCCCTTGCCCAGGGTATCATCGGATATATAAGTGGTCCTGATGGTATGGACAGTTCAGGCCTTAGCTCTTCTGCCGCTGTCGGTGTAGCTTACCTACTGGCTTTGGAAACTGCAAACAATTTAACAGTGTCTCCTGAAGAAAATATTGAGTATGATCGGCTGATTGAAAATGAATTTTGGGGCCTGCGAAATGGTATATTGGATCAATCAGCCATATTGCTTTCGAGCTATGGTTGTCTATTGTGCATGAACTGCAAGACTAAAGAACATAATCTTATACACCCACCAAAACTGGGGGAGAACCACGATACTGAGTGGCAGGAAGCATACAAAATATTATTGGCATTTTCAGGGTTGAAGCATAATTTGACCGTAAATCCTGGATATAATCACCGAGTTGCAGAGTGTCGAGAAGCTGCAACAGTCCTTTTGAGTGCATCCGGAGATGGTGCAGCAGAGCCACTCCTATCCAATGTTGACCCAGAAGTTTATCAAACTCACAAGCACATATTAGAACCTACTCTAGCAAAGAGAGCAGAGCATTATTTCTCAGAGAATATGCGGGTTAGCAAAGGACTCAAAGCTTGGGCTTCAGGCAGGTTCAAAGATTTTGGAATGCTCATTTCAGAATCTGGCCTAAGTTCTATTGAGAACTATGAATGCGGTTCTGAACCGCTGATACAATTGCGTGAGATCCTTCTAAGGGCTCCTGGTGTATATGGAGCACGGTTCAGTGGTGCTGGATTTAGAGGTTGCTGTGTTGCACTTGTAGATACTGATCATGCCAAAGAAGCTGCATCATTTGTCAGGGAAGAGTACAGCAAGGTCCAACCTGAGTTGGCAAGTCAGTTAAACCAAGACACAGCGGTTATGATATGCGAGACCGGTGATTGTGCCCGTGTTATTTGA

Protein Analysis

430

Amino Acids

46.67

Weight (kDa)

5.64

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 145 - 201 8.1e-09 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 324 - 401 4.5e-10 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 969
AccI GTMKAC 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 821
AciI CCGC 6 cut(s) 150, 456, 943, 1044, 1055, 1247
AclWI GGATC 3 cut(s) 16, 591, 1069
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 2 cut(s) 537, 957
AfaI GTAC 1 cut(s) 1199
AfiI CCNNNNNNNGG 3 cut(s) 391, 674, 1084
AgeI ACCGGT 1 cut(s) 1265
AgsI TTSAA 4 cut(s) 278, 548, 739, 985
AjnI CCWGG 3 cut(s) 390, 760, 1090
AluBI AGCT 8 cut(s) 131, 164, 447, 470, 609, 797, 965, 1175
AluI AGCT 8 cut(s) 131, 164, 447, 470, 609, 797, 965, 1175
Alw21I GWGCWC 2 cut(s) 133, 1108
Alw26I GTCTC 2 cut(s) 516, 1256
AlwI GGATC 3 cut(s) 16, 591, 1069
AlwNI CAGNNNCTG 1 cut(s) 1013
Aor13HI TCCGGA 1 cut(s) 821
AoxI GGCC 4 cut(s) 17, 439, 562, 1015
ApeKI GCWGC 3 cut(s) 797, 833, 1175
ApoI RAATTY 1 cut(s) 554
AsiGI ACCGGT 1 cut(s) 1265
AspS9I GGNCC 3 cut(s) 416, 562, 1207
AsuHPI GGTGA 5 cut(s) 221, 260, 329, 764, 1280
AvaII GGWCC 2 cut(s) 416, 1207
BaeGI GKGCMC 1 cut(s) 1279
BanII GRGCYC 2 cut(s) 133, 1090
Bbv12I GWGCWC 2 cut(s) 133, 1108
BbvI GCAGC 3 cut(s) 784, 845, 1162
BccI CCATC 2 cut(s) 416, 821
BciT130I CCWGG 3 cut(s) 392, 762, 1092
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 2 cut(s) 139, 1159
BcoDI GTCTC 2 cut(s) 516, 1256
BfaI CTAG 2 cut(s) 191, 905
BfuAI ACCTGC 1 cut(s) 969
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 4 cut(s) 456, 798, 834, 1176
BlsI GCNGC 4 cut(s) 457, 799, 835, 1177
Bme1390I CCNGG 3 cut(s) 392, 762, 1092
Bme18I GGWCC 2 cut(s) 416, 1207
BmgT120I GGNCC 3 cut(s) 416, 562, 1207
BmiI GGNNCC 3 cut(s) 352, 563, 1089
BmrFI CCNGG 3 cut(s) 392, 762, 1092
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 2 cut(s) 827, 1187
BmuI ACTGGG 1 cut(s) 683
Bpu10I CCTNAGC 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 1158
BsaI GGTCTC 1 cut(s) 1256
BsaJI CCNNGG 3 cut(s) 284, 390, 391
BsaWI WCCGGW 2 cut(s) 821, 1265
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 674, 1084
Bse118I RCCGGY 1 cut(s) 1265
Bse1I ACTGG 2 cut(s) 483, 678
Bse8I GATNNNNATC 1 cut(s) 1158
BseAI TCCGGA 1 cut(s) 821
BseBI CCWGG 3 cut(s) 392, 762, 1092
BseDI CCNNGG 3 cut(s) 284, 390, 391
BseGI GGATG 1 cut(s) 818
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 3 cut(s) 391, 674, 1084
BseMII CTCAG 5 cut(s) 44, 230, 684, 945, 1206
BseNI ACTGG 2 cut(s) 483, 678
BseRI GAGGAG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 1279
BseXI GCAGC 3 cut(s) 784, 845, 1162
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 852
BshFI GGCC 4 cut(s) 19, 441, 564, 1017
BshTI ACCGGT 1 cut(s) 1265
BsiHKAI GWGCWC 2 cut(s) 133, 1108
BsiSI CCGG 2 cut(s) 822, 1266
BslFI GGGAC 2 cut(s) 85, 166
BslI CCNNNNNNNGG 3 cut(s) 391, 674, 1084
BsmAI GTCTC 2 cut(s) 516, 1256
BsmFI GGGAC 2 cut(s) 85, 166
BsmI GAATGC 2 cut(s) 1002, 1046
BsnI GGCC 4 cut(s) 19, 441, 564, 1017
Bso31I GGTCTC 1 cut(s) 1256
Bsp1286I GDGCHC 4 cut(s) 133, 1090, 1108, 1279
Bsp13I TCCGGA 1 cut(s) 821
Bsp143I GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
BspACI CCGC 6 cut(s) 150, 456, 943, 1044, 1055, 1247
BspANI GGCC 4 cut(s) 19, 441, 564, 1017
BspCNI CTCAG 5 cut(s) 43, 229, 685, 944, 1207
BspEI TCCGGA 1 cut(s) 821
BspLI GGNNCC 3 cut(s) 352, 563, 1089
BspMI ACCTGC 1 cut(s) 969
BspPI GGATC 3 cut(s) 16, 591, 1069
BspQI GCTCTTC 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 1256
BsrFI RCCGGY 1 cut(s) 1265
BsrI ACTGG 2 cut(s) 483, 678
BssAI RCCGGY 1 cut(s) 1265
BssECI CCNNGG 3 cut(s) 284, 390, 391
BssMI GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 3 cut(s) 392, 762, 1092
Bst4CI ACNGT 8 cut(s) 157, 240, 301, 434, 508, 754, 805, 1110
Bst6I CTCTTC 3 cut(s) 284, 454, 1188
BstAPI GCANNNNNTGC 2 cut(s) 302, 633
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 9 cut(s) 30, 44, 216, 443, 693, 931, 1019, 1082, 1215
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 818
BstKTI GATC 6 cut(s) 11, 142, 538, 586, 1077, 1162
BstMAI GTCTC 2 cut(s) 516, 1256
BstMBI GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
BstMWI GCNNNNNNNGC 6 cut(s) 302, 350, 359, 633, 914, 1172
BstNI CCWGG 3 cut(s) 392, 762, 1092
BstSCI CCNGG 3 cut(s) 390, 760, 1090
BstSLI GKGCMC 1 cut(s) 1279
BstV1I GCAGC 3 cut(s) 784, 845, 1162
BstX2I RGATCY 1 cut(s) 1074
BstYI RGATCY 1 cut(s) 1074
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 4 cut(s) 19, 441, 564, 1017
BtsCI GGATG 1 cut(s) 818
BtsIMutI CAGTG 2 cut(s) 513, 1120
BveI ACCTGC 1 cut(s) 969
Cac8I GCNNGC 1 cut(s) 566
CaiI CAGNNNCTG 1 cut(s) 1013
Cfr10I RCCGGY 1 cut(s) 1265
Cfr13I GGNCC 3 cut(s) 416, 562, 1207
Csp6I GTAC 1 cut(s) 1198
CspAI ACCGGT 1 cut(s) 1265
CviAII CATG 2 cut(s) 628, 1163
CviQI GTAC 1 cut(s) 1198
DdeI CTNAG 9 cut(s) 30, 44, 216, 443, 693, 931, 1019, 1082, 1215
DpnI GATC 6 cut(s) 10, 141, 537, 585, 1076, 1161
DpnII GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
DraI TTTAAA 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 284, 454, 1188
EarI CTCTTC 3 cut(s) 284, 454, 1188
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 133, 1090
Eco31I GGTCTC 1 cut(s) 1256
Eco47I GGWCC 2 cut(s) 416, 1207
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 2 cut(s) 537, 957
EcoICRI GAGCTC 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 3 cut(s) 390, 760, 1090
EcoT14I CCWWGG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 2 cut(s) 133, 1090
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 631, 1166
FaqI GGGAC 2 cut(s) 85, 166
FatI CATG 2 cut(s) 627, 1162
FauI CCCGC 2 cut(s) 143, 936
FbaI TGATCA 2 cut(s) 139, 1159
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 4 cut(s) 456, 798, 834, 1176
FokI GGATG 1 cut(s) 805
FriOI GRGCYC 2 cut(s) 133, 1090
Fsp4HI GCNGC 4 cut(s) 456, 798, 834, 1176
FspBI CTAG 2 cut(s) 191, 905
GluI GCNGC 4 cut(s) 456, 798, 834, 1176
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 4 cut(s) 19, 441, 564, 1017
HapII CCGG 2 cut(s) 822, 1266
Hin1II CATG 2 cut(s) 631, 1166
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 2 cut(s) 957, 1010
HpaII CCGG 2 cut(s) 822, 1266
HphI GGTGA 5 cut(s) 221, 260, 329, 764, 1280
Hpy166II GTNNAC 2 cut(s) 374, 859
Hpy188I TCNGA 7 cut(s) 61, 114, 263, 404, 934, 1009, 1051
Hpy188III TCNNGA 5 cut(s) 234, 419, 515, 791, 822
Hpy8I GTNNAC 2 cut(s) 374, 859
HpyAV CCTTC 2 cut(s) 213, 1088
HpyCH4III ACNGT 8 cut(s) 157, 240, 301, 434, 508, 754, 805, 1110
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 350, 359, 633, 914, 1172
HpyF3I CTNAG 9 cut(s) 30, 44, 216, 443, 693, 931, 1019, 1082, 1215
Hsp92II CATG 2 cut(s) 631, 1166
Kpn2I TCCGGA 1 cut(s) 821
Ksp22I TGATCA 2 cut(s) 139, 1159
Kzo9I GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
LguI GCTCTTC 1 cut(s) 454
LmnI GCTCC 4 cut(s) 128, 350, 1093, 1103
Lsp1109I GCAGC 3 cut(s) 784, 845, 1162
LweI GCATC 2 cut(s) 827, 1187
MaeI CTAG 2 cut(s) 191, 905
MaeIII GTNAC 1 cut(s) 209
MalI GATC 6 cut(s) 10, 141, 537, 585, 1076, 1161
MboI GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
MboII GAAGA 4 cut(s) 301, 441, 530, 1205
MfeI CAATTG 1 cut(s) 1064
MflI RGATCY 1 cut(s) 1074
MhlI GDGCHC 4 cut(s) 133, 1090, 1108, 1279
MluCI AATT 6 cut(s) 171, 278, 499, 554, 745, 1064
MlyI GAGTC 1 cut(s) 951
MmeI TCCRAC 1 cut(s) 1234
MnlI CCTC 3 cut(s) 313, 341, 1124
Mph1103I ATGCAT 1 cut(s) 364
MroI TCCGGA 1 cut(s) 821
MseI TTAA 5 cut(s) 35, 174, 243, 503, 1232
MspA1I CMGCKG 3 cut(s) 458, 1057, 1247
MspI CCGG 2 cut(s) 822, 1266
MspR9I CCNGG 3 cut(s) 392, 762, 1092
MunI CAATTG 1 cut(s) 1064
Mva1269I GAATGC 2 cut(s) 1002, 1046
MvaI CCWGG 3 cut(s) 392, 762, 1092
MwoI GCNNNNNNNGC 6 cut(s) 302, 350, 359, 633, 914, 1172
NdeII GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
NlaIII CATG 2 cut(s) 631, 1166
NlaIV GGNNCC 3 cut(s) 352, 563, 1089
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 364
PasI CCCWGGG 1 cut(s) 391
PceI AGGCCT 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 454
PctI GAATGC 2 cut(s) 1002, 1046
PfeI GAWTC 1 cut(s) 1010
PfoI TCCNGGA 1 cut(s) 760
PinAI ACCGGT 1 cut(s) 1265
PkrI GCNGC 4 cut(s) 457, 799, 835, 1177
PleI GAGTC 1 cut(s) 951
PpsI GAGTC 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 133
Psp6I CCWGG 3 cut(s) 390, 760, 1090
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 3 cut(s) 390, 760, 1090
PspN4I GGNNCC 3 cut(s) 352, 563, 1089
PspPI GGNCC 3 cut(s) 416, 562, 1207
PsrI GAACNNNNNNTAC 4 cut(s) 418, 450, 1044, 1076
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 1074
RsaI GTAC 1 cut(s) 1199
RsaNI GTAC 1 cut(s) 1198
SacI GAGCTC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 5 cut(s) 35, 174, 243, 503, 1232
SatI GCNGC 4 cut(s) 456, 798, 834, 1176
Sau3AI GATC 6 cut(s) 8, 139, 535, 583, 1074, 1159
Sau96I GGNCC 3 cut(s) 416, 562, 1207
SchI GAGTC 1 cut(s) 951
ScrFI CCNGG 3 cut(s) 392, 762, 1092
SduI GDGCHC 4 cut(s) 133, 1090, 1108, 1279
SfaNI GCATC 2 cut(s) 827, 1187
SinI GGWCC 2 cut(s) 416, 1207
Sse9I AATT 6 cut(s) 171, 278, 499, 554, 745, 1064
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 6 cut(s) 150, 456, 943, 1044, 1055, 1247
SspI AATATT 2 cut(s) 526, 717
SspMI CTAG 2 cut(s) 191, 905
SstI GAGCTC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 3 cut(s) 390, 760, 1090
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 8 cut(s) 157, 240, 301, 434, 508, 754, 805, 1110
TaqI TCGA 2 cut(s) 605, 790
TasI AATT 6 cut(s) 171, 278, 499, 554, 745, 1064
TatI WGTACW 1 cut(s) 1197
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 1 cut(s) 1010
Tru1I TTAA 5 cut(s) 35, 174, 243, 503, 1232
Tru9I TTAA 5 cut(s) 35, 174, 243, 503, 1232
TscAI CASTG 2 cut(s) 513, 1120
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 797, 833, 1175
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 5 cut(s) 95, 285, 567, 644, 1053
TspRI CASTG 2 cut(s) 513, 1120
VpaK11BI GGWCC 2 cut(s) 416, 1207
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 2 cut(s) 191, 905
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.