Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003653

Physical Location & Seq

Genomic Coordinates Reverse (-)

11272930 .. 11285160

Gene Structure 12231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGTTATGTTGTGTTGTGTTGCAGCTAGATGAAATTAGAGGGGTAGTTTCAGAAATGTCTGGGAGAGGAAGGGAAGAAGTTCGGTGCGCGGCTTCTCCTTATCGAATTTGTCCACTCGGAGCTCATATTGATCATCAGGGTGGCATAGTATCTGCCATGACAATTAACAAGGGAATACTTTTAGGTTTTGTTCCTTCTGGTGACACCCAGGTTATTCTACGCTCGGGACAGTTTAAAGGCGAAGTTAGGTTCAGAATTGATGAAGTCTCATGCCCTATGAACAATGGAAATGATGCTTCCAAAAGGGATGAAGAAAGTGATTGGGGAAGTTATGCAAGAGGAGCTGTATATGCATTACAGAGTAGGAAGAACTGTCTTGTCCAGGGTATCATTGGATATATATGTGGTACTGAAGGTATGGACAGTTCAGGCATTAGCTCTTCAGCTGCTGTTGGCATAGCTTACCTAATGGCTTTGGAAAATGCAAACAATTTGATTGTGTCCCCTGAAGAAAATATTGAGTATGATCGGCTGATTGAAAATGAATTTCGGGGCCTGAGGAATGGTATATTGGACCAATCAGCCATATTACTGTCAAGCTATGGTTCTCTACTGTGCATGAACTGCAAGACTAAAGAACATAAGCTCATTCACCCGCCAAAATTGGGCAAGAACCATGAGACGGAGTGGCAGGAAGCATACAAAATATTATTGGCATTTTCAGGCTTAAAGCATGCTTTAACTGAAAATTCTGGATATAATCGTCGAGTTGGAGAGTGTCAAGAGGCTGCGTCGGTTCTTTTGCATGCATCTGGAAATGGTGCAGCAGAGCCAGTCCTATCTAATGTTGAGCCAGAAGCTTATCAAACTCACAAGCACATATTAGAATCTAATCTAGCCAAAAGAGCAGAGCATTATTTCTCTGAGAATATGCGGGTTATAAAAGGACTGGAAGCTTGGGCTTCAGGGAGGTTTAAAGATTTTGGAACGCTCATTACAGAATCTGGCTTAAGTTCAATTCAGAACTATGAATGTGGTTGTAAACCTCTGATACAATTGCGTGAGATCGTCCTAAAGGCTCCTGGTGTCTTTGGAGCACGGTTCAGTGGTGCCGGATTTAGAGGGTGCTGTGTTGCACTGGTAGATGCCAATCTTGCAGCTGAAGCTGCATCATTTGTAAGGGAAGAGTATAACAAGCTCCAGCCTGACTTGGCGAGTCAGTTAAACCAAGAACATGCGGTTGTGATATGCGAAGCTGGTGATTGTGCCCGTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019586 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046396 GO:0046835 GO:0047912 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

426

Amino Acids

46.4

Weight (kDa)

5.74

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	141 - 198	7.8e-08	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	321 - 398	6.9e-09	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10700 AT3G10700 AT3G10700
fragaria_vesca	FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430
malus_domestica	MD13G1235800.v1.1 MD16G1240500.v1.1
prunus_persica	Prupe.1G067200_v2.0.a1 Prupe.1G067200_v2.0.a1
pyrus_communis	pycom13g20830 pycom16g20150
rosa_chinensis	RchiOBHm_Chr4g0398191
rosa_laevigata	RLG00000009380
rosa_multiflora	Rmu_sc0002378.1_g000004
rosa_roxburghii	Rroxscaffold_5G00343090
rosa_rugosa	Rorug04G0006700 Rorug04G0006700
rosa_samantha	Rh4AG083900 Rh4BG081400 Rh4CG091000 Rh4DG076400
rosa_wichuraiana	Rw4G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
AccB1I	GGYRCC	1 cut(s)	1109
AccII	CGCG	1 cut(s)	89
AciI	CCGC	4 cut(s)	89, 656, 934, 1238
AcsI	RAATTY	3 cut(s)	105, 545, 748
AcuI	CTGAAG	5 cut(s)	426, 432, 528, 948, 1182
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	665, 682
AflII	CTTAAG	1 cut(s)	1009
AgsI	TTSAA	2 cut(s)	539, 1017
AjnI	CCWGG	3 cut(s)	207, 381, 1081
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
Alw21I	GWGCWC	2 cut(s)	124, 1099
Alw26I	GTCTC	2 cut(s)	271, 674
AlwNI	CAGNNNCTG	2 cut(s)	449, 1004
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	6 cut(s)	22, 446, 788, 824, 1157, 1166
ApoI	RAATTY	3 cut(s)	105, 545, 748
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	553, 574
AsuHPI	GGTGA	3 cut(s)	212, 644, 1271
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	574
AxyI	CCTNAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	1270
BanI	GGYRCC	1 cut(s)	1109
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	124, 1099
BbvI	GCAGC	6 cut(s)	34, 433, 775, 836, 1153, 1169
BciT130I	CCWGG	3 cut(s)	209, 383, 1083
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	271, 674
BfaI	CTAG	2 cut(s)	26, 896
BfrI	CTTAAG	1 cut(s)	1009
BisI	GCNGC	7 cut(s)	23, 90, 447, 789, 825, 1158, 1167
BlsI	GCNGC	7 cut(s)	24, 91, 448, 790, 826, 1159, 1168
Bme1390I	CCNGG	3 cut(s)	209, 383, 1083
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	553, 574
BmiI	GGNNCC	3 cut(s)	554, 1080, 1111
BmrFI	CCNGG	3 cut(s)	209, 383, 1083
BmsI	GCATC	4 cut(s)	283, 818, 1135, 1178
BpmI	CTGGAG	1 cut(s)	1184
BsaBI	GATNNNNATC	1 cut(s)	1149
BsaJI	CCNNGG	2 cut(s)	207, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	665, 682
Bse1I	ACTGG	3 cut(s)	833, 954, 1143
Bse21I	CCTNAGG	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	1149
BseBI	CCWGG	3 cut(s)	209, 383, 1083
BseDI	CCNNGG	2 cut(s)	207, 382
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	1149
BseLI	CCNNNNNNNGG	2 cut(s)	665, 682
BseMII	CTCAG	2 cut(s)	548, 915
BseNI	ACTGG	3 cut(s)	833, 954, 1143
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	1270
BseXI	GCAGC	6 cut(s)	34, 433, 775, 836, 1153, 1169
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	1109
BsiHKAI	GWGCWC	2 cut(s)	124, 1099
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	1113
BslFI	GGGAC	2 cut(s)	240, 487
BslI	CCNNNNNNNGG	2 cut(s)	665, 682
BsmAI	GTCTC	2 cut(s)	271, 674
BsmBI	CGTCTC	1 cut(s)	674
BsmFI	GGGAC	2 cut(s)	240, 487
BsnI	GGCC	1 cut(s)	555
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	124, 1099, 1270
Bsp143I	GATC	3 cut(s)	130, 526, 1065
BspACI	CCGC	4 cut(s)	89, 656, 934, 1238
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	549, 916
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	554, 1080, 1111
BspQI	GCTCTTC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	1109
BspTI	CTTAAG	1 cut(s)	1009
BsrI	ACTGG	3 cut(s)	833, 954, 1143
BssECI	CCNNGG	2 cut(s)	207, 382
BssMI	GATC	3 cut(s)	130, 526, 1065
Bst2UI	CCWGG	3 cut(s)	209, 383, 1083
Bst4CI	ACNGT	6 cut(s)	231, 374, 425, 594, 615, 1101
Bst6I	CTCTTC	2 cut(s)	445, 1179
BstAFI	CTTAAG	1 cut(s)	1009
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	735, 807
BstDEI	CTNAG	2 cut(s)	557, 924
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	133, 529, 1068
BstMAI	GTCTC	2 cut(s)	271, 674
BstMBI	GATC	3 cut(s)	130, 526, 1065
BstMWI	GCNNNNNNNGC	7 cut(s)	341, 350, 624, 905, 1154, 1163, 1166
BstNI	CCWGG	3 cut(s)	209, 383, 1083
BstNSI	RCATGY	3 cut(s)	737, 809, 1238
BstSCI	CCNGG	3 cut(s)	207, 381, 1081
BstSLI	GKGCMC	1 cut(s)	1270
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	6 cut(s)	34, 433, 775, 836, 1153, 1169
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	1111, 1136
Cac8I	GCNNGC	2 cut(s)	735, 807
CaiI	CAGNNNCTG	2 cut(s)	449, 1004
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	553, 574
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	7 cut(s)	157, 270, 619, 677, 734, 806, 1235
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	557, 924
DpnI	GATC	3 cut(s)	132, 528, 1067
DpnII	GATC	3 cut(s)	130, 526, 1065
DraI	TTTAAA	2 cut(s)	235, 976
Eam1104I	CTCTTC	2 cut(s)	445, 1179
EarI	CTCTTC	2 cut(s)	445, 1179
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	5 cut(s)	426, 432, 528, 948, 1182
Eco81I	CCTNAGG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	3 cut(s)	207, 381, 1081
EcoT22I	ATGCAT	2 cut(s)	355, 811
EcoT38I	GRGCYC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	7 cut(s)	160, 273, 622, 680, 737, 809, 1238
FaqI	GGGAC	2 cut(s)	240, 487
FatI	CATG	7 cut(s)	156, 269, 618, 676, 733, 805, 1234
FauI	CCCGC	2 cut(s)	663, 927
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	7 cut(s)	23, 90, 447, 789, 825, 1158, 1167
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	7 cut(s)	23, 90, 447, 789, 825, 1158, 1167
FspBI	CTAG	2 cut(s)	26, 896
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	7 cut(s)	23, 90, 447, 789, 825, 1158, 1167
GsuI	CTGGAG	1 cut(s)	1184
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	1113
HgaI	GACGC	1 cut(s)	780
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	7 cut(s)	160, 273, 622, 680, 737, 809, 1238
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	858, 954
HinfI	GANTC	3 cut(s)	887, 1001, 1216
HpaII	CCGG	1 cut(s)	1113
HphI	GGTGA	3 cut(s)	212, 644, 1271
Hpy166II	GTNNAC	2 cut(s)	113, 1043
Hpy188I	TCNGA	6 cut(s)	52, 119, 254, 925, 1023, 1050
Hpy188III	TCNNGA	4 cut(s)	225, 753, 782, 813
Hpy8I	GTNNAC	2 cut(s)	113, 1043
Hpy99I	CGWCG	2 cut(s)	768, 796
HpyAV	CCTTC	3 cut(s)	63, 204, 407
HpyCH4III	ACNGT	6 cut(s)	231, 374, 425, 594, 615, 1101
HpyF10VI	GCNNNNNNNGC	7 cut(s)	341, 350, 624, 905, 1154, 1163, 1166
HpyF3I	CTNAG	2 cut(s)	557, 924
Hsp92II	CATG	7 cut(s)	160, 273, 622, 680, 737, 809, 1238
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 526, 1065
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	5 cut(s)	119, 341, 1084, 1094, 1203
Lsp1109I	GCAGC	6 cut(s)	34, 433, 775, 836, 1153, 1169
LweI	GCATC	4 cut(s)	283, 818, 1135, 1178
MaeI	CTAG	2 cut(s)	26, 896
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	132, 528, 1067
MboI	GATC	3 cut(s)	130, 526, 1065
MboII	GAAGA	6 cut(s)	86, 323, 379, 432, 521, 1196
MfeI	CAATTG	1 cut(s)	1055
MhlI	GDGCHC	3 cut(s)	124, 1099, 1270
MlyI	GAGTC	1 cut(s)	1225
MmeI	TCCRAC	1 cut(s)	751
MnlI	CCTC	8 cut(s)	32, 59, 332, 552, 778, 963, 1056, 1115
Mph1103I	ATGCAT	2 cut(s)	355, 811
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	7 cut(s)	165, 234, 728, 740, 975, 1010, 1223
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	446, 1160
MspCI	CTTAAG	1 cut(s)	1009
MspI	CCGG	1 cut(s)	1113
MspR9I	CCNGG	3 cut(s)	209, 383, 1083
MunI	CAATTG	1 cut(s)	1055
MvaI	CCWGG	3 cut(s)	209, 383, 1083
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	7 cut(s)	341, 350, 624, 905, 1154, 1163, 1166
NdeII	GATC	3 cut(s)	130, 526, 1065
NlaIII	CATG	7 cut(s)	160, 273, 622, 680, 737, 809, 1238
NlaIV	GGNNCC	3 cut(s)	554, 1080, 1111
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	2 cut(s)	355, 811
NspI	RCATGY	3 cut(s)	737, 809, 1238
PaeI	GCATGC	2 cut(s)	737, 809
PciSI	GCTCTTC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	887, 1001
PkrI	GCNGC	7 cut(s)	24, 91, 448, 790, 826, 1159, 1168
PleI	GAGTC	1 cut(s)	1224
PpsI	GAGTC	1 cut(s)	1224
PsiI	TTATAA	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	207, 381, 1081
PspGI	CCWGG	3 cut(s)	207, 381, 1081
PspN4I	GGNNCC	3 cut(s)	554, 1080, 1111
PspPI	GGNCC	2 cut(s)	553, 574
PsrI	GAACNNNNNNTAC	4 cut(s)	409, 441, 979, 1011
PstNI	CAGNNNCTG	2 cut(s)	449, 1004
PvuII	CAGCTG	2 cut(s)	446, 1160
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	7 cut(s)	165, 234, 728, 740, 975, 1010, 1223
SatI	GCNGC	7 cut(s)	23, 90, 447, 789, 825, 1158, 1167
Sau3AI	GATC	3 cut(s)	130, 526, 1065
Sau96I	GGNCC	2 cut(s)	553, 574
SchI	GAGTC	1 cut(s)	1225
ScrFI	CCNGG	3 cut(s)	209, 383, 1083
SduI	GDGCHC	3 cut(s)	124, 1099, 1270
SfaNI	GCATC	4 cut(s)	283, 818, 1135, 1178
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
SphI	GCATGC	2 cut(s)	737, 809
SsiI	CCGC	4 cut(s)	89, 656, 934, 1238
SspI	AATATT	2 cut(s)	517, 708
SspMI	CTAG	2 cut(s)	26, 896
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	207, 381, 1081
TaaI	ACNGT	6 cut(s)	231, 374, 425, 594, 615, 1101
TaqI	TCGA	2 cut(s)	103, 766
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	887, 1001
Tru1I	TTAA	7 cut(s)	165, 234, 728, 740, 975, 1010, 1223
Tru9I	TTAA	7 cut(s)	165, 234, 728, 740, 975, 1010, 1223
TscAI	CASTG	2 cut(s)	1111, 1143
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	6 cut(s)	22, 446, 788, 824, 1157, 1166
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	7 cut(s)	45, 276, 293, 324, 558, 635, 1044
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	1111, 1143
Vha464I	CTTAAG	1 cut(s)	1009
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	3 cut(s)	105, 545, 748
XceI	RCATGY	3 cut(s)	737, 809, 1238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	26, 896
Zsp2I	ATGCAT	2 cut(s)	355, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.