Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003653

Physical Location & Seq

Genomic Coordinates Forward (+)

51936515 .. 51948271

Gene Structure 11757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCTGGATCGTCTTGGCCTTCTCAACCTCAGCTAGATGAAATTAGAGGGAAAGTTTCAGAAATGTCTGGGAGAGGAAGGGAAGAAGTTCGGTGCGCGGCTTCTCCTTATCGAATTTGTCCACTTGGAGCTCATATTGATCATCAGGGTGGCATAGTATCTGCCATGACAATTAACAAGGGAATACTTTTAGGTTTCGTTCCTTCTGGTGACGCCCAGGTTATTCTACACTCGGGACAGTTTAAAGGCGAAGTTAGGTTCAGAATTGATGAAGTTTCATGCCCTATGAACAACGGAAATGATGCTTCCAAAAGGGATGAAGAAAGTGATTGGGGAAGTTATGCAAGAGGAGCTGTATATGCATTACAGAGTAGGAAGAACTGTCTTGTCCAGGGTATCATTGGATATATATGTGGTACTGAAGGTATGGACAGTTCAGGCATTAGTTCTTCAGCTGCTGTTGGCATAGCTTACCTAATGGCTTTGGAAAATGCAAACAATTTGATTGTGTCCCCTGAAGAAAATATTGAGTATGATCGGCTGATTGAAAATGAATTTCGGGGCCTGAGGAATGGTATATTGGACCAATCAGCCATATTACTCTCGAGCTATGGTTCTCTACTGTGCATGAACTGCAAGACTAAAGAACATAAGCTTATACACCCGCCTAAATTGGGCAAGAACCGCGAGACGGAGTGGCAGGAAGCATACAAAATATTATTGGCATTTTCAGGCTTAAAGCATGCCTTAACTGAAAATTCTGGATATAATCGTCGAGTTGGAGAGTGTCAAGAGGCTGCGTCGGTTCTTTTGCATGCATCTGGAATTGGTGCAGCAGAGCCAGTCCTATCTAATGTTGAGCCAGAAGCTTATCAAACTCACAAGCACATATTAGAATCTAATCTAGCCAAAAGAGCAGAGCATTATTTCTCTGAGAATATGCGGGTTATAAAAGGACTGGAAGCTTGGGCTTCAGGGAGGTTCAAAGATTTTGGAACGCTCATTACAGAATCTGGCTTAAGTTCAATTCAGAACTATGAATGTGGTTGTAAACCTCTGATACAATTGCGTGAGATCGTCCTAAAGGCTCCTGGTGTCTTTGGAGCACGGTTCAGTGGTGCCGGATTTAGAGGGTGCTGTGTTGCACTGGTAGATGCCAATCTTGCAGCTGAAGCGGCATCATTTGTCAGGGAAGAGTATAACAAGCTCCAGCCTGACTTGGCGAGTCAGTTAAACCAAGAACATGCGGTTGTGATATGCGAAGCTGGTGATTGTGCCCGTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019586 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046396 GO:0046835 GO:0047912 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

430

Amino Acids

46.66

Weight (kDa)

5.84

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	144 - 201	7.9e-08	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	324 - 401	7e-09	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10700 AT3G10700 AT3G10700
fragaria_vesca	FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430 FvH4_4g06430
malus_domestica	MD13G1235800.v1.1 MD16G1240500.v1.1
prunus_persica	Prupe.1G067200_v2.0.a1 Prupe.1G067200_v2.0.a1
pyrus_communis	pycom13g20830 pycom16g20150
rosa_chinensis	RchiOBHm_Chr4g0398191
rosa_laevigata	RLG00000009380
rosa_multiflora	Rmu_sc0002378.1_g000004
rosa_roxburghii	Rroxscaffold_5G00343090
rosa_rugosa	Rorug04G0006700 Rorug04G0006700
rosa_samantha	Rh4AG083900 Rh4BG081400 Rh4CG091000 Rh4DG076400
rosa_wichuraiana	Rw4G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	950
AccB1I	GGYRCC	1 cut(s)	1118
AccII	CGCG	2 cut(s)	98, 687
AciI	CCGC	6 cut(s)	98, 665, 685, 943, 1175, 1247
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	3 cut(s)	114, 554, 757
AcuI	CTGAAG	5 cut(s)	435, 441, 537, 957, 1191
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	674, 691
AflII	CTTAAG	1 cut(s)	1018
AgsI	TTSAA	3 cut(s)	548, 985, 1026
AjnI	CCWGG	3 cut(s)	216, 390, 1090
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
Alw21I	GWGCWC	2 cut(s)	133, 1108
Alw26I	GTCTC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	2 cut(s)	458, 1013
Ama87I	CYCGRG	2 cut(s)	232, 604
AoxI	GGCC	2 cut(s)	17, 562
ApeKI	GCWGC	4 cut(s)	455, 797, 833, 1166
ApoI	RAATTY	3 cut(s)	114, 554, 757
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	562, 583
AsuHPI	GGTGA	2 cut(s)	221, 1280
AvaI	CYCGRG	2 cut(s)	232, 604
AvaII	GGWCC	1 cut(s)	583
AxyI	CCTNAGG	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	1279
BanI	GGYRCC	1 cut(s)	1118
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	2 cut(s)	133, 1108
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	442, 784, 845, 1178
BciT130I	CCWGG	3 cut(s)	218, 392, 1092
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	2 cut(s)	35, 905
BfrI	CTTAAG	1 cut(s)	1018
BisI	GCNGC	6 cut(s)	99, 456, 798, 834, 1167, 1176
BlsI	GCNGC	6 cut(s)	100, 457, 799, 835, 1168, 1177
Bme1390I	CCNGG	3 cut(s)	218, 392, 1092
Bme18I	GGWCC	1 cut(s)	583
BmeT110I	CYCGRG	2 cut(s)	232, 604
BmgT120I	GGNCC	2 cut(s)	562, 583
BmiI	GGNNCC	3 cut(s)	563, 1089, 1120
BmrFI	CCNGG	3 cut(s)	218, 392, 1092
BmsI	GCATC	4 cut(s)	292, 827, 1144, 1187
BpmI	CTGGAG	1 cut(s)	1193
Bpu10I	CCTNAGC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	216, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	674, 691
Bse1I	ACTGG	3 cut(s)	842, 963, 1152
Bse21I	CCTNAGG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	3 cut(s)	218, 392, 1092
BseDI	CCNNGG	2 cut(s)	216, 391
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	2 cut(s)	674, 691
BseMII	CTCAG	3 cut(s)	44, 557, 924
BseNI	ACTGG	3 cut(s)	842, 963, 1152
BseRI	GAGGAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	1279
BseXI	GCAGC	4 cut(s)	442, 784, 845, 1178
BsgI	GTGCAG	1 cut(s)	852
Bsh1236I	CGCG	2 cut(s)	98, 687
BshFI	GGCC	2 cut(s)	19, 564
BshNI	GGYRCC	1 cut(s)	1118
BsiHKAI	GWGCWC	2 cut(s)	133, 1108
BsiHKCI	CYCGRG	2 cut(s)	232, 604
BsiSI	CCGG	1 cut(s)	1122
BslFI	GGGAC	2 cut(s)	249, 496
BslI	CCNNNNNNNGG	2 cut(s)	674, 691
BsmAI	GTCTC	1 cut(s)	683
BsmBI	CGTCTC	1 cut(s)	683
BsmFI	GGGAC	2 cut(s)	249, 496
BsnI	GGCC	2 cut(s)	19, 564
BsoBI	CYCGRG	2 cut(s)	232, 604
Bsp1286I	GDGCHC	3 cut(s)	133, 1108, 1279
Bsp143I	GATC	4 cut(s)	8, 139, 535, 1074
BspACI	CCGC	6 cut(s)	98, 665, 685, 943, 1175, 1247
BspANI	GGCC	2 cut(s)	19, 564
BspCNI	CTCAG	3 cut(s)	43, 558, 925
BspFNI	CGCG	2 cut(s)	98, 687
BspLI	GGNNCC	3 cut(s)	563, 1089, 1120
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	1118
BspTI	CTTAAG	1 cut(s)	1018
BsrI	ACTGG	3 cut(s)	842, 963, 1152
BssECI	CCNNGG	2 cut(s)	216, 391
BssMI	GATC	4 cut(s)	8, 139, 535, 1074
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	3 cut(s)	218, 392, 1092
Bst4CI	ACNGT	5 cut(s)	240, 383, 434, 624, 1110
Bst6I	CTCTTC	1 cut(s)	1188
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	1018
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	744, 816
BstDEI	CTNAG	3 cut(s)	30, 566, 933
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	2 cut(s)	98, 687
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	4 cut(s)	11, 142, 538, 1077
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	4 cut(s)	8, 139, 535, 1074
BstMWI	GCNNNNNNNGC	8 cut(s)	350, 359, 633, 684, 914, 1163, 1172, 1175
BstNI	CCWGG	3 cut(s)	218, 392, 1092
BstNSI	RCATGY	3 cut(s)	746, 818, 1247
BstSCI	CCNGG	3 cut(s)	216, 390, 1090
BstSLI	GKGCMC	1 cut(s)	1279
BstUI	CGCG	2 cut(s)	98, 687
BstV1I	GCAGC	4 cut(s)	442, 784, 845, 1178
Bsu36I	CCTNAGG	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	19, 564
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	1120, 1145
Cac8I	GCNNGC	2 cut(s)	744, 816
CaiI	CAGNNNCTG	2 cut(s)	458, 1013
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	562, 583
CseI	GACGC	2 cut(s)	221, 789
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	6 cut(s)	166, 279, 628, 743, 815, 1244
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	3 cut(s)	30, 566, 933
DpnI	GATC	4 cut(s)	10, 141, 537, 1076
DpnII	GATC	4 cut(s)	8, 139, 535, 1074
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	1188
EarI	CTCTTC	1 cut(s)	1188
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	5 cut(s)	435, 441, 537, 957, 1191
Eco81I	CCTNAGG	1 cut(s)	566
Eco88I	CYCGRG	2 cut(s)	232, 604
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	3 cut(s)	216, 390, 1090
EcoT22I	ATGCAT	2 cut(s)	364, 820
EcoT38I	GRGCYC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	683
FaeI	CATG	6 cut(s)	169, 282, 631, 746, 818, 1247
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	2 cut(s)	249, 496
FatI	CATG	6 cut(s)	165, 278, 627, 742, 814, 1243
FauI	CCCGC	2 cut(s)	672, 936
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	6 cut(s)	99, 456, 798, 834, 1167, 1176
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	6 cut(s)	99, 456, 798, 834, 1167, 1176
FspBI	CTAG	2 cut(s)	35, 905
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	6 cut(s)	99, 456, 798, 834, 1167, 1176
GsuI	CTGGAG	1 cut(s)	1193
HaeIII	GGCC	2 cut(s)	19, 564
HapII	CCGG	1 cut(s)	1122
HgaI	GACGC	2 cut(s)	221, 789
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	169, 282, 631, 746, 818, 1247
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HindIII	AAGCTT	3 cut(s)	653, 867, 963
HinfI	GANTC	3 cut(s)	896, 1010, 1225
HpaII	CCGG	1 cut(s)	1122
HphI	GGTGA	2 cut(s)	221, 1280
Hpy166II	GTNNAC	2 cut(s)	122, 1052
Hpy188I	TCNGA	5 cut(s)	61, 263, 934, 1032, 1059
Hpy188III	TCNNGA	5 cut(s)	234, 604, 762, 791, 822
Hpy8I	GTNNAC	2 cut(s)	122, 1052
Hpy99I	CGWCG	2 cut(s)	777, 805
HpyAV	CCTTC	4 cut(s)	30, 72, 213, 416
HpyCH4III	ACNGT	5 cut(s)	240, 383, 434, 624, 1110
HpyF10VI	GCNNNNNNNGC	8 cut(s)	350, 359, 633, 684, 914, 1163, 1172, 1175
HpyF3I	CTNAG	3 cut(s)	30, 566, 933
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	169, 282, 631, 746, 818, 1247
HspAI	GCGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	8, 139, 535, 1074
LmnI	GCTCC	5 cut(s)	128, 350, 1093, 1103, 1212
Lsp1109I	GCAGC	4 cut(s)	442, 784, 845, 1178
LweI	GCATC	4 cut(s)	292, 827, 1144, 1187
MaeI	CTAG	2 cut(s)	35, 905
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	4 cut(s)	10, 141, 537, 1076
MboI	GATC	4 cut(s)	8, 139, 535, 1074
MboII	GAAGA	6 cut(s)	95, 332, 388, 441, 530, 1205
MfeI	CAATTG	1 cut(s)	1064
MhlI	GDGCHC	3 cut(s)	133, 1108, 1279
MlyI	GAGTC	1 cut(s)	1234
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	9 cut(s)	39, 41, 68, 341, 561, 787, 972, 1065, 1124
Mph1103I	ATGCAT	2 cut(s)	364, 820
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	6 cut(s)	174, 243, 737, 749, 1019, 1232
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	455, 1169
MspCI	CTTAAG	1 cut(s)	1018
MspI	CCGG	1 cut(s)	1122
MspR9I	CCNGG	3 cut(s)	218, 392, 1092
MunI	CAATTG	1 cut(s)	1064
MvaI	CCWGG	3 cut(s)	218, 392, 1092
MvnI	CGCG	2 cut(s)	98, 687
MwoI	GCNNNNNNNGC	8 cut(s)	350, 359, 633, 684, 914, 1163, 1172, 1175
NdeII	GATC	4 cut(s)	8, 139, 535, 1074
NlaIII	CATG	6 cut(s)	169, 282, 631, 746, 818, 1247
NlaIV	GGNNCC	3 cut(s)	563, 1089, 1120
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	2 cut(s)	364, 820
NspI	RCATGY	3 cut(s)	746, 818, 1247
PaeI	GCATGC	2 cut(s)	746, 818
PaeR7I	CTCGAG	1 cut(s)	604
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	896, 1010
PkrI	GCNGC	6 cut(s)	100, 457, 799, 835, 1168, 1177
PleI	GAGTC	1 cut(s)	1233
PpsI	GAGTC	1 cut(s)	1233
PsiI	TTATAA	1 cut(s)	950
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	3 cut(s)	216, 390, 1090
PspGI	CCWGG	3 cut(s)	216, 390, 1090
PspN4I	GGNNCC	3 cut(s)	563, 1089, 1120
PspPI	GGNCC	2 cut(s)	562, 583
PsrI	GAACNNNNNNTAC	4 cut(s)	418, 450, 988, 1020
PstNI	CAGNNNCTG	2 cut(s)	458, 1013
PvuII	CAGCTG	2 cut(s)	455, 1169
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	6 cut(s)	174, 243, 737, 749, 1019, 1232
SatI	GCNGC	6 cut(s)	99, 456, 798, 834, 1167, 1176
Sau3AI	GATC	4 cut(s)	8, 139, 535, 1074
Sau96I	GGNCC	2 cut(s)	562, 583
SchI	GAGTC	1 cut(s)	1234
ScrFI	CCNGG	3 cut(s)	218, 392, 1092
SduI	GDGCHC	3 cut(s)	133, 1108, 1279
SfaNI	GCATC	4 cut(s)	292, 827, 1144, 1187
Sfr274I	CTCGAG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	583
SlaI	CTCGAG	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	604, 1018
SmoI	CTYRAG	2 cut(s)	604, 1018
SphI	GCATGC	2 cut(s)	746, 818
SsiI	CCGC	6 cut(s)	98, 665, 685, 943, 1175, 1247
SspI	AATATT	2 cut(s)	526, 717
SspMI	CTAG	2 cut(s)	35, 905
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	3 cut(s)	216, 390, 1090
TaaI	ACNGT	5 cut(s)	240, 383, 434, 624, 1110
TaqI	TCGA	3 cut(s)	112, 605, 775
TauI	GCSGC	2 cut(s)	101, 1178
TfiI	GAWTC	2 cut(s)	896, 1010
Tru1I	TTAA	6 cut(s)	174, 243, 737, 749, 1019, 1232
Tru9I	TTAA	6 cut(s)	174, 243, 737, 749, 1019, 1232
TscAI	CASTG	2 cut(s)	1120, 1152
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	4 cut(s)	455, 797, 833, 1166
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	8 cut(s)	54, 267, 285, 302, 333, 567, 644, 1053
TspGWI	ACGGA	2 cut(s)	309, 707
TspRI	CASTG	2 cut(s)	1120, 1152
Vha464I	CTTAAG	1 cut(s)	1018
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	3 cut(s)	114, 554, 757
XceI	RCATGY	3 cut(s)	746, 818, 1247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	35, 905
Zsp2I	ATGCAT	2 cut(s)	364, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.