Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008349

Physical Location & Seq

Genomic Coordinates Reverse (-)

25130187 .. 25135510

Gene Structure 5324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1241800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGCGTGTTCCTGGAAAGAAATCATCCTTTAAGGAGTACGGGAAACCCGGTTATTCCGGCTCTCTGGCAAACCTAACTTCGTCGCCAAAAGTTAAAAAACCAAAATCAAAGTCGTCCAAGACCATTATTGCTTCAGCCTTGTCAAAGAAGAGAGGCGCCAACTCTTCAAGCAAGGCGTCAAGGAATTATGATGCTGACAATAAATTGCTGAGTAGAAAAGGATTTCGTAAAGAGCATGATACAGATTCTTCCAAAAATCCGTCTGCTGTGAAACTTCAACACAACAAGTTATCAGACAACGGCTCTGATGAGAGAGGAGAAAAAAGGAGGAGAAAGAAGAAACCGAAAAAGGATAAGGAGGAGTTGGATGAAACTTCTCGCTTGCAGAGGAGGACAAGGTACCTTTTGATTAAAATAAAACTGGAGCACAACCTTATTGACGCTTATGCCGGTGAAGGTTGGAAGGGTCAGAGTCGAGAAAAGATTAGGCCTGAAATGGAACTACAGAGAGCCAATAAGCAGATTTTAAATTGCAAGCTTGGAATCCGTGATGCAATTCATCAACTGGATTCTCTGAGCTCAGTAGGAAGCATTGCAGATTCTTTTATTTCTCCAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAAGTGCAAGTTGAACGAAGCTTTCCCTGATAATGATATTATACTATGTGATGGGACATGCAATTGTGCATTCCACCAAAAATGTCTTGATCCTCCCTTGGATACTGAAAATATTCCTCGAGGAGAGCAAGGTTGGTTTTGCAAATTTTGTGAGTGTAAAATGGAAATACTAGAATTAGTAAATGCTCATCTGGGGACCTGCTTTCCCATGAACAGTGGTTGGCAGGATGTCTTCAAGGAAGAAGCCACTTTCCCCCATGGCAAGAATTCCTTATTAAATCCAGATGAAGAATGGCCTTCGGATGATTCTGAAGATGATGATTATAATCCAGAGAGGAACGAGAACAGCTGCAGCATCAGCAGGGGAGGCAGCGATGACATTGCATCAGAAGAGGAATTGTCAACTGATGTCAGTGTAGGTTCTGATGTATCTACTGACGGGGAAATTGTTTCCAGCCGCAGACAGAAAAGAAGTGTTGATTATAAGAAGTTATATGATGAAATGTTTGGAAAAGATGGTCCTTTGCTTGAACAAATTAGTGATGATGAAGACTGGGGTCCCGGTAAAAGAAAGCGGAGAGGGAATGAATCTGATGCAGCCAGCACTCTTATGACTCTCTATGAAAGTGAAAGAAATCCAGATGTTGACCGTTCAGAAAAGAAATCCAGCCAACACTCTTCAGATACGCAAGTTAGAAGGTCATGTTTCCGAATTCCTCGAAATGCAGTAGAGAAGCTCCGCCAAGTGTTTTCTGAGAATGAACTTCCTTCTAGAGCTGTCAAGGATAATCTTTCAAAAGAATTGGGCCTTAATCCTGAGAAGGTTAGTAAATGGTTCAAGAACGCACGTTACTTAGCTCTGAAAACCAGAAAGGGAGCGAGTGGTAAAGACCTTGACACTTTTACTCCTGGAATCTCCAAGGCACCGGGATATGAAAATGTGACTGGAAAAGCTGCTGATCTCATGGCATCAGATTCAGATGATGATACCTTAGCTGAAACTGTCGTCCATTCGCCAAAGAATGCTAAGGCCTTCCGGAGAAAGCATCCAAAATCACTAAGCAGCCCTTTGAAGAAGAGTCAACAGAAGGGTCCTTCGTGTGGGTCACGTGCAAAGAGCAGCAAGGTCTTTGTCCTTCAGAATAAGGATGGAAAAGAGTTGAGTGATGATGTGAGCTTGAAGAAGCTTAGGAATACACGAACAAAGGAGAAGAGAGCCAACCTTATCGCTGGAGGAGGTGAAGATGGATGTCGAGTTCCAGAGCTCGAAATGGAGAGACTATGTAAAGCCAAAGGTAGGCTAGAATACATGAGACAGAAATTATTGAAATTTCAAATCGTGAAGGCAAAGCAGAAATCAAATATATCTCGATTGCATGAACAGTCTGTGATTTATGTTCCAATAGCAGAAGTAAAGGAAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

693

Amino Acids

77.66

Weight (kDa)

9.15

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	216 - 267	1.5e-08	PHD-finger
Homeodomain	PF00046	456 - 501	2.5e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29940 AT4G29940
fragaria_vesca	FvH4_4g07290 FvH4_4g07290
malus_domestica	MD13G1241800.v1.1 MD16G1248700.v1.1
prunus_persica	Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1
pyrus_communis	pycom13g21370 pycom16g20840
rosa_chinensis	RchiOBHm_Chr4g0399601
rosa_laevigata	RLG00000009259
rosa_multiflora	Rmu_sc0002285.1_g000037
rosa_roxburghii	Rroxscaffold_5G00344520
rosa_rugosa	Rorug04G0017600
rosa_samantha	Rh4AG095500 Rh4BG093000 Rh4CG104000 Rh4DG087900
rosa_wichuraiana	Rw4G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	975, 1134
AbsI	CCTCGAGG	1 cut(s)	768
Acc36I	ACCTGC	1 cut(s)	857
Acc65I	GGTACC	1 cut(s)	399
AccB1I	GGYRCC	3 cut(s)	155, 399, 1573
AccIII	TCCGGA	1 cut(s)	1686
AciI	CCGC	3 cut(s)	1108, 1225, 1390
AclWI	GGATC	2 cut(s)	628, 734
AcsI	RAATTY	4 cut(s)	794, 916, 1362, 1979
AcuI	CTGAAG	4 cut(s)	117, 981, 1314, 1772
AcvI	CACGTG	1 cut(s)	1760
AcyI	GRCGYC	2 cut(s)	156, 176
AfaI	GTAC	2 cut(s)	38, 401
AfiI	CCNNNNNNNGG	2 cut(s)	1751, 1947
AjnI	CCWGG	2 cut(s)	10, 1558
AloI	GAACNNNNNNTCC	2 cut(s)	1890, 1922
Alw21I	GWGCWC	3 cut(s)	429, 581, 1917
Alw26I	GTCTC	2 cut(s)	1921, 1957
AlwI	GGATC	2 cut(s)	628, 734
Ama87I	CYCGRG	1 cut(s)	768
Aor13HI	TCCGGA	1 cut(s)	1686
AoxI	GGCC	4 cut(s)	488, 944, 1456, 1680
ApeKI	GCWGC	7 cut(s)	999, 1002, 1020, 1247, 1604, 1713, 1770
ApoI	RAATTY	4 cut(s)	794, 916, 1362, 1979
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
Asp700I	GAANNNNTTC	1 cut(s)	762
Asp718I	GGTACC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	5 cut(s)	846, 1169, 1208, 1456, 1742
AsuC2I	CCSGG	3 cut(s)	48, 1212, 1578
AsuHPI	GGTGA	2 cut(s)	464, 1901
AvaI	CYCGRG	1 cut(s)	768
AvaII	GGWCC	4 cut(s)	846, 1169, 1208, 1742
BaeI	ACNNNNGTAYC	2 cut(s)	1326, 1359
BanI	GGYRCC	3 cut(s)	155, 399, 1573
BanII	GRGCYC	2 cut(s)	581, 1917
BbrPI	CACGTG	1 cut(s)	1760
BbsI	GAAGAC	2 cut(s)	874, 1206
Bbv12I	GWGCWC	3 cut(s)	429, 581, 1917
BbvI	GCAGC	7 cut(s)	986, 1014, 1032, 1259, 1591, 1725, 1782
BccI	CCATC	5 cut(s)	611, 695, 1160, 1793, 1889
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	1013, 1047
BciT130I	CCWGG	2 cut(s)	12, 1560
BciVI	GTATCC	1 cut(s)	745
BcnI	CCSGG	3 cut(s)	48, 1212, 1578
BcoDI	GTCTC	2 cut(s)	1921, 1957
BfaI	CTAG	3 cut(s)	821, 1422, 1952
BfmI	CTRYAG	2 cut(s)	503, 1000
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	8 cut(s)	1000, 1003, 1021, 1108, 1248, 1605, 1714, 1771
BlsI	GCNGC	8 cut(s)	1001, 1004, 1022, 1109, 1249, 1606, 1715, 1772
Bme1390I	CCNGG	5 cut(s)	12, 48, 1212, 1560, 1578
Bme18I	GGWCC	4 cut(s)	846, 1169, 1208, 1742
BmeT110I	CYCGRG	1 cut(s)	768
BmgT120I	GGNCC	5 cut(s)	846, 1169, 1208, 1456, 1742
BmiI	GGNNCC	7 cut(s)	157, 401, 847, 1209, 1210, 1575, 1743
BmrFI	CCNGG	5 cut(s)	12, 48, 1212, 1560, 1578
BmrI	ACTGGG	1 cut(s)	1213
BmsI	GCATC	7 cut(s)	181, 541, 1014, 1043, 1234, 1628, 1705
BmuI	ACTGGG	1 cut(s)	1213
BoxI	GACNNNNGTC	1 cut(s)	1206
BpiI	GAAGAC	2 cut(s)	874, 1206
BpmI	CTGGAG	3 cut(s)	443, 597, 1902
Bpu10I	CCTNAGC	3 cut(s)	1642, 1677, 1838
BpuMI	CCSGG	3 cut(s)	48, 1212, 1578
BsaAI	YACGTR	1 cut(s)	1760
BsaBI	GATNNNNATC	1 cut(s)	975
BsaHI	GRCGYC	2 cut(s)	156, 176
BsaJI	CCNNGG	3 cut(s)	747, 907, 1569
BsaWI	WCCGGW	1 cut(s)	1686
BsaXI	ACNNNNNCTCC	2 cut(s)	1540, 1570
Bsc4I	CCNNNNNNNGG	2 cut(s)	1751, 1947
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	4 cut(s)	426, 570, 1208, 1600
Bse3DI	GCAATG	2 cut(s)	591, 1029
Bse8I	GATNNNNATC	1 cut(s)	975
BseAI	TCCGGA	1 cut(s)	1686
BseBI	CCWGG	2 cut(s)	12, 1560
BseDI	CCNNGG	3 cut(s)	747, 907, 1569
BseGI	GGATG	7 cut(s)	23, 373, 883, 958, 1696, 1804, 1904
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	2 cut(s)	1751, 1947
BseMI	GCAATG	2 cut(s)	591, 1029
BseMII	CTCAG	5 cut(s)	200, 566, 594, 1395, 1458
BseNI	ACTGG	4 cut(s)	426, 570, 1208, 1600
BseRI	GAGGAG	6 cut(s)	330, 343, 374, 403, 786, 1899
BseXI	GCAGC	7 cut(s)	986, 1014, 1032, 1259, 1591, 1725, 1782
BshFI	GGCC	4 cut(s)	490, 946, 1458, 1682
BshNI	GGYRCC	3 cut(s)	155, 399, 1573
BsiHKAI	GWGCWC	3 cut(s)	429, 581, 1917
BsiHKCI	CYCGRG	1 cut(s)	768
BsiSI	CCGG	6 cut(s)	48, 57, 450, 1212, 1577, 1687
BslFI	GGGAC	3 cut(s)	718, 859, 1194
BslI	CCNNNNNNNGG	2 cut(s)	1751, 1947
BsmAI	GTCTC	2 cut(s)	1921, 1957
BsmFI	GGGAC	3 cut(s)	718, 859, 1194
BsmI	GAATGC	2 cut(s)	719, 1678
BsnI	GGCC	4 cut(s)	490, 946, 1458, 1682
BsoBI	CYCGRG	1 cut(s)	768
Bsp1286I	GDGCHC	3 cut(s)	429, 581, 1917
Bsp13I	TCCGGA	1 cut(s)	1686
Bsp143I	GATC	3 cut(s)	620, 739, 1609
Bsp19I	CCATGG	1 cut(s)	907
BspACI	CCGC	3 cut(s)	1108, 1225, 1390
BspANI	GGCC	4 cut(s)	490, 946, 1458, 1682
BspCNI	CTCAG	5 cut(s)	201, 567, 593, 1396, 1459
BspEI	TCCGGA	1 cut(s)	1686
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	7 cut(s)	157, 401, 847, 1209, 1210, 1575, 1743
BspMAI	CTGCAG	1 cut(s)	1004
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	2 cut(s)	628, 734
BspT107I	GGYRCC	3 cut(s)	155, 399, 1573
BsrDI	GCAATG	2 cut(s)	591, 1029
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	4 cut(s)	426, 570, 1208, 1600
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	3 cut(s)	747, 907, 1569
BssMI	GATC	3 cut(s)	620, 739, 1609
BssNI	GRCGYC	2 cut(s)	156, 176
BssT1I	CCWWGG	3 cut(s)	747, 907, 1569
Bst2UI	CCWGG	2 cut(s)	12, 1560
Bst4CI	ACNGT	4 cut(s)	866, 1301, 1654, 2034
Bst6I	CTCTTC	6 cut(s)	143, 169, 1035, 1333, 1721, 1856
BstACI	GRCGYC	2 cut(s)	156, 176
BstBAI	YACGTR	1 cut(s)	1760
BstC8I	GCNNGC	3 cut(s)	383, 536, 1252
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	7 cut(s)	23, 373, 883, 958, 1696, 1804, 1904
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	623, 742, 1612
BstMAI	GTCTC	2 cut(s)	1921, 1957
BstMBI	GATC	3 cut(s)	620, 739, 1609
BstMWI	GCNNNNNNNGC	2 cut(s)	1008, 1017
BstNI	CCWGG	2 cut(s)	12, 1560
BstNSI	RCATGY	1 cut(s)	711
BstPAI	GACNNNNGTC	1 cut(s)	1206
BstSCI	CCNGG	5 cut(s)	10, 46, 1210, 1558, 1576
BstSFI	CTRYAG	2 cut(s)	503, 1000
BstV1I	GCAGC	7 cut(s)	986, 1014, 1032, 1259, 1591, 1725, 1782
BstV2I	GAAGAC	2 cut(s)	874, 1206
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	4 cut(s)	490, 946, 1458, 1682
BtgI	CCRYGG	1 cut(s)	907
BtgZI	GCGATG	1 cut(s)	1038
BtsCI	GGATG	7 cut(s)	23, 373, 883, 958, 1696, 1804, 1904
BtsIMutI	CAGTG	2 cut(s)	871, 1069
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	3 cut(s)	383, 536, 1252
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	5 cut(s)	846, 1169, 1208, 1456, 1742
CseI	GACGC	2 cut(s)	165, 449
Csp6I	GTAC	2 cut(s)	37, 400
CviAII	CATG	9 cut(s)	236, 632, 708, 859, 908, 1353, 1615, 1960, 2027
CviQI	GTAC	2 cut(s)	37, 400
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	3 cut(s)	622, 741, 1611
DpnII	GATC	3 cut(s)	620, 739, 1609
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	6 cut(s)	143, 169, 1035, 1333, 1721, 1856
EarI	CTCTTC	6 cut(s)	143, 169, 1035, 1333, 1721, 1856
EciI	GGCGGA	1 cut(s)	1379
Ecl136II	GAGCTC	2 cut(s)	579, 1915
Eco130I	CCWWGG	3 cut(s)	747, 907, 1569
Eco147I	AGGCCT	2 cut(s)	490, 1682
Eco24I	GRGCYC	2 cut(s)	581, 1917
Eco47I	GGWCC	4 cut(s)	846, 1169, 1208, 1742
Eco53kI	GAGCTC	2 cut(s)	579, 1915
Eco57I	CTGAAG	4 cut(s)	117, 981, 1314, 1772
Eco72I	CACGTG	1 cut(s)	1760
Eco88I	CYCGRG	1 cut(s)	768
EcoICRI	GAGCTC	2 cut(s)	579, 1915
EcoO109I	RGGNCCY	3 cut(s)	846, 1208, 1742
EcoRI	GAATTC	2 cut(s)	916, 1362
EcoRII	CCWGG	2 cut(s)	10, 1558
EcoT14I	CCWWGG	3 cut(s)	747, 907, 1569
EcoT38I	GRGCYC	2 cut(s)	581, 1917
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	3 cut(s)	747, 907, 1569
FaeI	CATG	9 cut(s)	239, 635, 711, 862, 911, 1356, 1618, 1963, 2030
FalI	AAGNNNNNCTT	4 cut(s)	905, 937, 1702, 1734
FaqI	GGGAC	3 cut(s)	718, 859, 1194
FatI	CATG	9 cut(s)	235, 631, 707, 858, 907, 1352, 1614, 1959, 2026
Fnu4HI	GCNGC	8 cut(s)	1000, 1003, 1021, 1108, 1248, 1605, 1714, 1771
FokI	GGATG	7 cut(s)	10, 380, 890, 965, 1683, 1811, 1911
FriOI	GRGCYC	2 cut(s)	581, 1917
Fsp4HI	GCNGC	8 cut(s)	1000, 1003, 1021, 1108, 1248, 1605, 1714, 1771
FspBI	CTAG	3 cut(s)	821, 1422, 1952
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	8 cut(s)	1000, 1003, 1021, 1108, 1248, 1605, 1714, 1771
GsuI	CTGGAG	3 cut(s)	443, 597, 1902
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	490, 946, 1458, 1682
HapII	CCGG	6 cut(s)	48, 57, 450, 1212, 1577, 1687
HgaI	GACGC	2 cut(s)	165, 449
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	2 cut(s)	156, 176
Hin1II	CATG	9 cut(s)	239, 635, 711, 862, 911, 1356, 1618, 1963, 2030
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	3 cut(s)	1053, 1297, 1733
HindII	GTYRAC	3 cut(s)	1053, 1297, 1733
HindIII	AAGCTT	3 cut(s)	536, 669, 1835
HpaII	CCGG	6 cut(s)	48, 57, 450, 1212, 1577, 1687
HphI	GGTGA	2 cut(s)	464, 1901
Hpy166II	GTNNAC	3 cut(s)	1053, 1297, 1733
Hpy8I	GTNNAC	3 cut(s)	1053, 1297, 1733
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	4 cut(s)	866, 1301, 1654, 2034
HpyCH4IV	ACGT	2 cut(s)	1498, 1759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1008, 1017
HpySE526I	ACGT	2 cut(s)	1498, 1759
Hsp92I	GRCGYC	2 cut(s)	156, 176
Hsp92II	CATG	9 cut(s)	239, 635, 711, 862, 911, 1356, 1618, 1963, 2030
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
KflI	GGGWCCC	1 cut(s)	1208
Kpn2I	TCCGGA	1 cut(s)	1686
KpnI	GGTACC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	620, 739, 1609
LmnI	GCTCC	3 cut(s)	424, 1392, 1526
Lsp1109I	GCAGC	7 cut(s)	986, 1014, 1032, 1259, 1591, 1725, 1782
LweI	GCATC	7 cut(s)	181, 541, 1014, 1043, 1234, 1628, 1705
MaeI	CTAG	3 cut(s)	821, 1422, 1952
MaeII	ACGT	2 cut(s)	1498, 1759
MaeIII	GTNAC	3 cut(s)	1499, 1591, 1755
MalI	GATC	3 cut(s)	622, 741, 1611
MboI	GATC	3 cut(s)	620, 739, 1609
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	3 cut(s)	429, 581, 1917
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	3 cut(s)	481, 1258, 1738
MmeI	TCCRAC	2 cut(s)	345, 440
MroI	TCCGGA	1 cut(s)	1686
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	6 cut(s)	30, 93, 411, 527, 926, 1461
MslI	CAYNNNNRTG	1 cut(s)	1259
MspA1I	CMGCKG	1 cut(s)	999
MspI	CCGG	6 cut(s)	48, 57, 450, 1212, 1577, 1687
MspR9I	CCNGG	5 cut(s)	12, 48, 1212, 1560, 1578
MunI	CAATTG	1 cut(s)	712
Mva1269I	GAATGC	2 cut(s)	719, 1678
MvaI	CCWGG	2 cut(s)	12, 1560
MwoI	GCNNNNNNNGC	2 cut(s)	1008, 1017
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	3 cut(s)	48, 1212, 1578
NcoI	CCATGG	1 cut(s)	907
NdeII	GATC	3 cut(s)	620, 739, 1609
NlaIII	CATG	9 cut(s)	239, 635, 711, 862, 911, 1356, 1618, 1963, 2030
NlaIV	GGNNCC	7 cut(s)	157, 401, 847, 1209, 1210, 1575, 1743
NmuCI	GTSAC	2 cut(s)	1591, 1755
NspI	RCATGY	1 cut(s)	711
PaeR7I	CTCGAG	1 cut(s)	768
PagI	TCATGA	1 cut(s)	631
PceI	AGGCCT	2 cut(s)	490, 1682
PctI	GAATGC	2 cut(s)	719, 1678
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	8 cut(s)	245, 543, 569, 599, 956, 1238, 1563, 1625
PfoI	TCCNGGA	2 cut(s)	10, 1558
PkrI	GCNGC	8 cut(s)	1001, 1004, 1022, 1109, 1249, 1606, 1715, 1772
PleI	GAGTC	3 cut(s)	480, 1258, 1737
PluTI	GGCGCC	1 cut(s)	159
PmaCI	CACGTG	1 cut(s)	1760
PmlI	CACGTG	1 cut(s)	1760
PpsI	GAGTC	3 cut(s)	480, 1258, 1737
Ppu21I	YACGTR	1 cut(s)	1760
PpuMI	RGGWCCY	3 cut(s)	846, 1208, 1742
PshAI	GACNNNNGTC	1 cut(s)	1206
PsiI	TTATAA	2 cut(s)	975, 1134
Psp124BI	GAGCTC	2 cut(s)	581, 1917
Psp5II	RGGWCCY	3 cut(s)	846, 1208, 1742
Psp6I	CCWGG	2 cut(s)	10, 1558
PspCI	CACGTG	1 cut(s)	1760
PspGI	CCWGG	2 cut(s)	10, 1558
PspN4I	GGNNCC	7 cut(s)	157, 401, 847, 1209, 1210, 1575, 1743
PspPI	GGNCC	5 cut(s)	846, 1169, 1208, 1456, 1742
PspPPI	RGGWCCY	3 cut(s)	846, 1208, 1742
PspXI	VCTCGAGB	1 cut(s)	768
PsrI	GAACNNNNNNTAC	2 cut(s)	1484, 1516
PstI	CTGCAG	1 cut(s)	1004
PsuI	RGATCY	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	999
RsaI	GTAC	2 cut(s)	38, 401
RsaNI	GTAC	2 cut(s)	37, 400
RseI	CAYNNNNRTG	1 cut(s)	1259
SacI	GAGCTC	2 cut(s)	581, 1917
SaqAI	TTAA	6 cut(s)	30, 93, 411, 527, 926, 1461
SatI	GCNGC	8 cut(s)	1000, 1003, 1021, 1108, 1248, 1605, 1714, 1771
Sau3AI	GATC	3 cut(s)	620, 739, 1609
Sau96I	GGNCC	5 cut(s)	846, 1169, 1208, 1456, 1742
SchI	GAGTC	3 cut(s)	481, 1258, 1738
ScrFI	CCNGG	5 cut(s)	12, 48, 1212, 1560, 1578
SduI	GDGCHC	3 cut(s)	429, 581, 1917
SfaNI	GCATC	7 cut(s)	181, 541, 1014, 1043, 1234, 1628, 1705
SfcI	CTRYAG	2 cut(s)	503, 1000
SfoI	GGCGCC	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	768
SinI	GGWCC	4 cut(s)	846, 1169, 1208, 1742
SlaI	CTCGAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	1259
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
SseBI	AGGCCT	2 cut(s)	490, 1682
SsiI	CCGC	3 cut(s)	1108, 1225, 1390
SspDI	GGCGCC	1 cut(s)	155
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	3 cut(s)	821, 1422, 1952
SstI	GAGCTC	2 cut(s)	581, 1917
StuI	AGGCCT	2 cut(s)	490, 1682
StyD4I	CCNGG	5 cut(s)	10, 46, 1210, 1558, 1576
StyI	CCWWGG	3 cut(s)	747, 907, 1569
TaaI	ACNGT	4 cut(s)	866, 1301, 1654, 2034
TaiI	ACGT	2 cut(s)	1501, 1762
TaqI	TCGA	6 cut(s)	475, 769, 1369, 1903, 1917, 2020
TauI	GCSGC	1 cut(s)	1110
TfiI	GAWTC	8 cut(s)	245, 543, 569, 599, 956, 1238, 1563, 1625
Tru1I	TTAA	6 cut(s)	30, 93, 411, 527, 926, 1461
Tru9I	TTAA	6 cut(s)	30, 93, 411, 527, 926, 1461
TscAI	CASTG	2 cut(s)	871, 1069
TseFI	GTSAC	2 cut(s)	1591, 1755
TseI	GCWGC	7 cut(s)	999, 1002, 1020, 1247, 1604, 1713, 1770
Tsp45I	GTSAC	2 cut(s)	1591, 1755
TspGWI	ACGGA	2 cut(s)	249, 536
TspRI	CASTG	2 cut(s)	871, 1069
VpaK11BI	GGWCC	4 cut(s)	846, 1169, 1208, 1742
XapI	RAATTY	4 cut(s)	794, 916, 1362, 1979
XbaI	TCTAGA	1 cut(s)	1421
XceI	RCATGY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	939
XhoI	CTCGAG	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	3 cut(s)	821, 1422, 1952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.