Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008349

Physical Location & Seq

Genomic Coordinates Forward (+)

2620178 .. 2627342

Gene Structure 7165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTTGCCCCCCAAAAGGACCCGAGAGAGGAAGTCATTCAAGCATGGTACATGGATGATAGTGATGAGGACCAGAGACTACCCCATCACCGCGAGCCCAAGGAATTTGTATCGCTGGACCAACTTGCTGAGCTTGGGGTTCTCAGCTGGCGTTTAGATGCTGATAACTATGAAACAGATGAGGAGTTGAAGAAGATTCGTGAAGAACGTGGTTACTCCTACATGGACTTCTGTGAGGTTTGCCCTGAAAAGCTTCCAAATTATGAGGAGAAGATAAAGAACTTCTTTGAGGAACATCTTCACACTGATGAGGAGATCCGCTATGCCGTGGCGGGAAGTGGTTATTTTGATGTTAGGGACTGTAACGAACGCTGGATTCGTGTATGGGTGAAAAAGGGTGGAATGATTGTTTTGCCTGCTGGAATTTATCACCGCTTTACTTTGGACACAGACAACTACATAAAGGCAATGCGGCTTTTCATTGGTGATCCAATTTGGACTCCATTCAATCGCCCTCATGACGATCTTCCAGCAAGGGAGGAGTACCTCAAAACTTTTGTGCATAATGAAGCTGGTGAACATGCAGTTTCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

198

Amino Acids

23.52

Weight (kDa)

4.84

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	14 - 168	1e-64	ARD/ARD' family
Cupin_2	PF07883	96 - 152	2.2e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29940 AT4G29940
fragaria_vesca	FvH4_4g07290 FvH4_4g07290
malus_domestica	MD13G1241800.v1.1 MD16G1248700.v1.1
prunus_persica	Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1
pyrus_communis	pycom13g21370 pycom16g20840
rosa_chinensis	RchiOBHm_Chr4g0399601
rosa_laevigata	RLG00000009259
rosa_multiflora	Rmu_sc0002285.1_g000037
rosa_roxburghii	Rroxscaffold_5G00344520
rosa_rugosa	Rorug04G0017600
rosa_samantha	Rh4AG095500 Rh4BG093000 Rh4CG104000 Rh4DG087900
rosa_wichuraiana	Rw4G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	5 cut(s)	91, 319, 332, 433, 472
AclWI	GGATC	2 cut(s)	310, 482
AcsI	RAATTY	2 cut(s)	104, 423
AfaI	GTAC	2 cut(s)	50, 545
AfiI	CCNNNNNNNGG	2 cut(s)	16, 28
AgsI	TTSAA	3 cut(s)	41, 190, 508
AluBI	AGCT	4 cut(s)	133, 147, 253, 572
AluI	AGCT	4 cut(s)	133, 147, 253, 572
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	310, 482
Ama87I	CYCGRG	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	104, 423
Asp700I	GAANNNNTTC	3 cut(s)	36, 252, 297
AspS9I	GGNCC	3 cut(s)	19, 70, 118
AsuHPI	GGTGA	5 cut(s)	80, 400, 422, 497, 587
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	19, 70, 118
BanII	GRGCYC	1 cut(s)	99
BccI	CCATC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	473
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	474
Bme18I	GGWCC	3 cut(s)	19, 70, 118
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	19, 70, 118
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	99, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 28
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	99, 327
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	16, 28
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	120, 157
BseRI	GAGGAG	4 cut(s)	197, 281, 326, 554
Bsh1236I	CGCG	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	16, 28
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	315, 487, 523
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	5 cut(s)	91, 319, 332, 433, 472
BspCNI	CTCAG	2 cut(s)	121, 156
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	310, 482
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	99, 327
BssMI	GATC	3 cut(s)	315, 487, 523
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	95, 149, 417
BstDEI	CTNAG	2 cut(s)	129, 143
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	3 cut(s)	318, 490, 526
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	315, 487, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	584
BstUI	CGCG	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	3 cut(s)	95, 149, 417
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	19, 70, 118
Csp6I	GTAC	2 cut(s)	49, 544
CviAII	CATG	5 cut(s)	45, 52, 223, 518, 581
CviJI	RGCY	7 cut(s)	97, 133, 147, 253, 475, 572, 593
CviKI_1	RGCY	7 cut(s)	97, 133, 147, 253, 475, 572, 593
CviQI	GTAC	2 cut(s)	49, 544
DdeI	CTNAG	2 cut(s)	129, 143
DpnI	GATC	3 cut(s)	317, 489, 525
DpnII	GATC	3 cut(s)	315, 487, 523
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	3 cut(s)	19, 70, 118
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	48, 55, 226, 521, 584
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	5 cut(s)	44, 51, 222, 517, 580
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	473
GluI	GCNGC	1 cut(s)	473
Hin1II	CATG	5 cut(s)	48, 55, 226, 521, 584
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	196, 376, 499
HphI	GGTGA	5 cut(s)	80, 400, 422, 497, 587
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188III	TCNNGA	2 cut(s)	200, 518
Hpy8I	GTNNAC	1 cut(s)	578
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	562, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	2 cut(s)	129, 143
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	5 cut(s)	48, 55, 226, 521, 584
Kzo9I	GATC	3 cut(s)	315, 487, 523
LpnPI	CCDG	9 cut(s)	86, 101, 133, 258, 358, 405, 429, 543, 558
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	212, 362
MalI	GATC	3 cut(s)	317, 489, 525
MboI	GATC	3 cut(s)	315, 487, 523
MboII	GAAGA	6 cut(s)	202, 205, 215, 283, 290, 518
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	4 cut(s)	104, 259, 423, 492
MlyI	GAGTC	1 cut(s)	493
MroXI	GAANNNNTTC	3 cut(s)	36, 252, 297
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeII	GATC	3 cut(s)	315, 487, 523
NlaIII	CATG	5 cut(s)	48, 55, 226, 521, 584
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	584
PagI	TCATGA	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	2 cut(s)	205, 376
PdmI	GAANNNNTTC	3 cut(s)	36, 252, 297
PfeI	GAWTC	2 cut(s)	196, 376
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	19, 70, 118
PspPPI	RGGWCCY	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	2 cut(s)	50, 545
RsaNI	GTAC	2 cut(s)	49, 544
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	3 cut(s)	315, 487, 523
Sau96I	GGNCC	3 cut(s)	19, 70, 118
SchI	GAGTC	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	135, 149, 211, 240, 255, 549, 574
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	3 cut(s)	19, 70, 118
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	104, 259, 423, 492
SsiI	CCGC	5 cut(s)	91, 319, 332, 433, 472
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	211
TasI	AATT	4 cut(s)	104, 259, 423, 492
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	196, 376
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	186, 469, 582
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	3 cut(s)	19, 70, 118
XapI	RAATTY	2 cut(s)	104, 423
XceI	RCATGY	1 cut(s)	584
XmnI	GAANNNNTTC	3 cut(s)	36, 252, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.