Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008349

Physical Location & Seq

Genomic Coordinates Reverse (-)

17951882 .. 17957218

Gene Structure 5337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21370.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGAATGTATATGTGTGTTTTTATTGCCACAGCTTCAAAGGCCAACAGTTGATAGAGATCGATCCATTCTTTTTCAGTATGGATACATTGGTTAAAAATATGCGTGTTCCTGGAAAGAAATCATCCTTTAAGGAGTACGGGAAACCCGGTTATTCCGGTTCTCTGGCAAACCTGATTTCGTCGCCAAAAGTTAAAAAAGGTGGAAAAGTTCCACATGTTAAAAAACCAAAATCAAAGTCGTCCAAGACCATTATTGCTTCAGCCTTGTCAAAGAAGAGAGGTGCCAACTCTTCAAGCAACGCGTCACGGAATTATGATGCTTACAATAAATTGCTGAGTAGAAAAGGATTTCGTAAAGAGCATGATACAGATTCTTCCAAAAATCCATCTGCTGTGAAACTTCAACACAACAAGTTATCAGAGAACGGCTCTGATGAGAAAGGAGAAAAAAGGAGGAGAAAGAAGAAACCGAAAAAGGATAAGGTGGAGTTGGATGAAACTTCTCGCTTGCAGAGGAGGACAAGGTACCTTTTGATTAAAATAAAACTGGAGCAGAACCTTATTGACGCTTATGCCGGTGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCTGAAATGGAACTACAGAGAGCCAATAAGCAGATTTTAAATTGCAAGCTTGGAATCCGTGATGCAATTCATCAACTGGATTCTCTGAGCTCAGTAGGAAGCATTGCAGATTCTTTTATTTCTCCAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAAGTGCAAGTTGAACGAAGCTTTCCCTGATAATGATATTATACTATGTGATGGGACATGCAATTGTGCATTCCACCAAAAATGTCTTGATCCTCCCTTGGATACTGAAAATATTCCTCGAGGAGAGCAAGGTTGGTTTTGCAAATTTTGTGAGTGTAAAATGGAAATACTAGAATTAGTAAATGCTCATCTGGGGACCTGCTTTCCCATGAACAGTGGTTGGCAGGATGTCTTCAAGGAAGAAGCTGCTTTCCCCCATGGCAAGAGTTCCTTATTAAATCCAGATGAAGAATGGCCTTCCGATGATTCTGAAGATGATGATTATAATCCAGAGAGGAACGAGAACAGCTGCAGCAGGGGAGGCAGCAATGACATTGCATCAGAAGAGGAATTTTCAACTGATGTCAGTGTAGGTTCTGATGTATCTACCGACGGGGAAATTGTTTCCGGCCGCAGACAGAAAAGAAGTGTTGATTATAAGAAGTTATATGATGAAATGTTTGGAAAAGATGGTCCTTTGCTTGAACAAATTAGTGATGATGAAGACTGGGGTCCCAGTAAAAGAAAGCGGAGAGGAAAAGAATCTGATGCAGCCAGCACTCTTATGACTCTCTATGAAAGTGAAAGAAATCCAGATGTTGACCGTACAGAAAAGAAATCCAGCCAACACTCTTCAGATACGCAAGTTAGAAGGTCATGTTTCCGAATTCCTCGAAATGCAGTAGAGAAGCTCCGCCAAGTGTTTTCTGAGAATGAACTTCCTTCTAGAGCTGTCAAGGATAATCTTTCAAAAGAATTGGGCCTTAATCCTGAGAAGGTTAGTAAATGGTTCAAGAACGCACGTTACTTAGCCCTGAAAACCAGAAAGGGAGCGAGTGATAAAGACCTTGACACTTTTACTCCTGGAATCTCCAAGGAACCGGGATATGAAAATGTGACTGGAAAAGCTGCTGATCTCATGGCATCAGATTCAGATGATGATACCTTAGCTGAAACTGTGGTCCATTCGCCAAAGAATGTTAAGGCCTTCCGGAGAAAGCATCCAAAATCACTAAGCAGCCCCTTGAGGAAGAGTCAACAGAAAGGTCCTTCGTGTGGGTCATGTGCAAAGAGCAACGAGGTCTTTGTCCTTCAGAATAAGGATGGAAAAGAGTTGAGTGATGATGTGAGCTTGAAGAAGCTTAGGAATACACGAACAAAGGAGAAGAGGGCCAACCGTATCGCTGGAGGAGGTGAAGATGGATGTCGAGTTGCAGAGCTGGAAATGGAGAGACTATGTAAAGCCAAAGGTAGGCTAGAATACGTGAGACAGAAATTATTGAAATTTCAAACCGTGAAGGCAAAGCAGAATTCAAATATATCTCGATTGCATGAACAGTCTGTGATTTATGTTCCAATAGCGGAACTAAAGGAAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

733

Amino Acids

82.47

Weight (kDa)

9.1

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29940 AT4G29940
fragaria_vesca	FvH4_4g07290 FvH4_4g07290
malus_domestica	MD13G1241800.v1.1 MD16G1248700.v1.1
prunus_persica	Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1
pyrus_communis	pycom13g21370 pycom16g20840
rosa_chinensis	RchiOBHm_Chr4g0399601
rosa_laevigata	RLG00000009259
rosa_multiflora	Rmu_sc0002285.1_g000037
rosa_roxburghii	Rroxscaffold_5G00344520
rosa_rugosa	Rorug04G0017600
rosa_samantha	Rh4AG095500 Rh4BG093000 Rh4CG104000 Rh4DG087900
rosa_wichuraiana	Rw4G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1101, 1254
AbsI	CCTCGAGG	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	983
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	2 cut(s)	281, 525
AccII	CGCG	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	1806
AciI	CCGC	4 cut(s)	1228, 1345, 1510, 2177
AclWI	GGATC	3 cut(s)	56, 754, 860
AcoI	YGGCCR	1 cut(s)	1225
AcsI	RAATTY	5 cut(s)	920, 1166, 1482, 2099, 2125
AcuI	CTGAAG	4 cut(s)	243, 1107, 1434, 1892
AfaI	GTAC	3 cut(s)	137, 527, 1423
AfiI	CCNNNNNNNGG	2 cut(s)	1871, 2067
AflIII	ACRYGT	2 cut(s)	214, 300
AjnI	CCWGG	2 cut(s)	109, 1678
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	2 cut(s)	2041, 2077
AlwI	GGATC	3 cut(s)	56, 754, 860
Ama87I	CYCGRG	1 cut(s)	894
Aor13HI	TCCGGA	1 cut(s)	1806
AoxI	GGCC	7 cut(s)	40, 614, 1070, 1225, 1576, 1800, 1986
ApeKI	GCWGC	7 cut(s)	1022, 1125, 1128, 1140, 1367, 1724, 1833
ApoI	RAATTY	5 cut(s)	920, 1166, 1482, 2099, 2125
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	888
Asp718I	GGTACC	1 cut(s)	525
AspS9I	GGNCC	7 cut(s)	972, 1289, 1328, 1576, 1777, 1862, 1986
AsuC2I	CCSGG	2 cut(s)	147, 1698
AsuHPI	GGTGA	2 cut(s)	590, 2021
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	5 cut(s)	972, 1289, 1328, 1777, 1862
BaeI	ACNNNNGTAYC	4 cut(s)	75, 108, 1446, 1479
BanI	GGYRCC	2 cut(s)	281, 525
BanII	GRGCYC	1 cut(s)	707
BbsI	GAAGAC	2 cut(s)	1000, 1326
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	7 cut(s)	1009, 1112, 1140, 1152, 1379, 1711, 1845
BccI	CCATC	6 cut(s)	394, 737, 821, 1280, 1913, 2009
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	2 cut(s)	111, 1680
BciVI	GTATCC	2 cut(s)	76, 871
BcnI	CCSGG	2 cut(s)	147, 1698
BcoDI	GTCTC	2 cut(s)	2041, 2077
BfaI	CTAG	3 cut(s)	947, 1542, 2072
BfmI	CTRYAG	2 cut(s)	629, 1126
BfuAI	ACCTGC	1 cut(s)	983
BfuI	GTATCC	2 cut(s)	76, 871
BisI	GCNGC	8 cut(s)	1023, 1126, 1129, 1141, 1228, 1368, 1725, 1834
BlsI	GCNGC	8 cut(s)	1024, 1127, 1130, 1142, 1229, 1369, 1726, 1835
Bme1390I	CCNGG	4 cut(s)	111, 147, 1680, 1698
Bme18I	GGWCC	5 cut(s)	972, 1289, 1328, 1777, 1862
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	7 cut(s)	972, 1289, 1328, 1576, 1777, 1862, 1986
BmiI	GGNNCC	6 cut(s)	283, 527, 973, 1329, 1330, 1695
BmrFI	CCNGG	4 cut(s)	111, 147, 1680, 1698
BmrI	ACTGGG	2 cut(s)	1326, 1333
BmsI	GCATC	6 cut(s)	307, 667, 1163, 1354, 1748, 1825
BmuI	ACTGGG	2 cut(s)	1326, 1333
BoxI	GACNNNNGTC	1 cut(s)	1326
BpiI	GAAGAC	2 cut(s)	1000, 1326
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	3 cut(s)	569, 723, 2022
Bpu10I	CCTNAGC	2 cut(s)	1762, 1958
BpuEI	CTTGAG	1 cut(s)	1861
BpuMI	CCSGG	2 cut(s)	147, 1698
Bsa29I	ATCGAT	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	2080
BsaBI	GATNNNNATC	2 cut(s)	56, 1101
BsaJI	CCNNGG	3 cut(s)	873, 1033, 1689
BsaWI	WCCGGW	2 cut(s)	155, 1806
BsaXI	ACNNNNNCTCC	2 cut(s)	1660, 1690
Bsc4I	CCNNNNNNNGG	2 cut(s)	1871, 2067
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	5 cut(s)	552, 696, 1328, 1332, 1720
Bse3DI	GCAATG	3 cut(s)	717, 1149, 1150
Bse8I	GATNNNNATC	2 cut(s)	56, 1101
BseAI	TCCGGA	1 cut(s)	1806
BseBI	CCWGG	2 cut(s)	111, 1680
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	873, 1033, 1689
BseGI	GGATG	6 cut(s)	122, 499, 1009, 1816, 1924, 2024
BseJI	GATNNNNATC	2 cut(s)	56, 1101
BseLI	CCNNNNNNNGG	2 cut(s)	1871, 2067
BseMI	GCAATG	3 cut(s)	717, 1149, 1150
BseMII	CTCAG	5 cut(s)	326, 692, 720, 1515, 1578
BseNI	ACTGG	5 cut(s)	552, 696, 1328, 1332, 1720
BseRI	GAGGAG	4 cut(s)	469, 529, 912, 2019
BseX3I	CGGCCG	1 cut(s)	1225
BseXI	GCAGC	7 cut(s)	1009, 1112, 1140, 1152, 1379, 1711, 1845
Bsh1236I	CGCG	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	1228
BshFI	GGCC	7 cut(s)	42, 616, 1072, 1227, 1578, 1802, 1988
BshNI	GGYRCC	2 cut(s)	281, 525
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	1228
BsiHKAI	GWGCWC	1 cut(s)	707
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	6 cut(s)	147, 156, 576, 1224, 1697, 1807
BslFI	GGGAC	3 cut(s)	844, 985, 1314
BslI	CCNNNNNNNGG	2 cut(s)	1871, 2067
BsmAI	GTCTC	2 cut(s)	2041, 2077
BsmFI	GGGAC	3 cut(s)	844, 985, 1314
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	7 cut(s)	42, 616, 1072, 1227, 1578, 1802, 1988
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	1806
Bsp143I	GATC	5 cut(s)	57, 61, 746, 865, 1729
Bsp19I	CCATGG	1 cut(s)	1033
BspACI	CCGC	4 cut(s)	1228, 1345, 1510, 2177
BspANI	GGCC	7 cut(s)	42, 616, 1072, 1227, 1578, 1802, 1988
BspCNI	CTCAG	5 cut(s)	327, 693, 719, 1516, 1579
BspDI	ATCGAT	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	1806
BspFNI	CGCG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	6 cut(s)	283, 527, 973, 1329, 1330, 1695
BspMAI	CTGCAG	1 cut(s)	1130
BspMI	ACCTGC	1 cut(s)	983
BspPI	GGATC	3 cut(s)	56, 754, 860
BspT107I	GGYRCC	2 cut(s)	281, 525
BsrDI	GCAATG	3 cut(s)	717, 1149, 1150
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	5 cut(s)	552, 696, 1328, 1332, 1720
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	873, 1033, 1689
BssMI	GATC	5 cut(s)	57, 61, 746, 865, 1729
BssT1I	CCWWGG	3 cut(s)	873, 1033, 1689
Bst2UI	CCWGG	2 cut(s)	111, 1680
Bst4CI	ACNGT	7 cut(s)	48, 992, 1421, 1774, 1994, 2110, 2154
Bst6I	CTCTTC	6 cut(s)	269, 295, 1155, 1453, 1841, 1976
BstBAI	YACGTR	1 cut(s)	2080
BstC8I	GCNNGC	3 cut(s)	509, 662, 1372
BstDEI	CTNAG	9 cut(s)	335, 701, 706, 1524, 1587, 1624, 1762, 1829, 1958
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	6 cut(s)	122, 499, 1009, 1816, 1924, 2024
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	5 cut(s)	60, 64, 749, 868, 1732
BstMAI	GTCTC	2 cut(s)	2041, 2077
BstMBI	GATC	5 cut(s)	57, 61, 746, 865, 1729
BstMCI	CGRYCG	1 cut(s)	1228
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 1137
BstNI	CCWGG	2 cut(s)	111, 1680
BstNSI	RCATGY	2 cut(s)	218, 837
BstPAI	GACNNNNGTC	1 cut(s)	1326
BstSCI	CCNGG	4 cut(s)	109, 145, 1678, 1696
BstSFI	CTRYAG	2 cut(s)	629, 1126
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	7 cut(s)	1009, 1112, 1140, 1152, 1379, 1711, 1845
BstV2I	GAAGAC	2 cut(s)	1000, 1326
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BstZI	CGGCCG	1 cut(s)	1225
Bsu15I	ATCGAT	1 cut(s)	60
BsuI	GTATCC	2 cut(s)	76, 871
BsuRI	GGCC	7 cut(s)	42, 616, 1072, 1227, 1578, 1802, 1988
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	1033
BtsCI	GGATG	6 cut(s)	122, 499, 1009, 1816, 1924, 2024
BtsIMutI	CAGTG	2 cut(s)	997, 1189
BveI	ACCTGC	1 cut(s)	983
Cac8I	GCNNGC	3 cut(s)	509, 662, 1372
CciI	TCATGA	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	7 cut(s)	972, 1289, 1328, 1576, 1777, 1862, 1986
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	2 cut(s)	291, 575
Csp6I	GTAC	3 cut(s)	136, 526, 1422
CviQI	GTAC	3 cut(s)	136, 526, 1422
DdeI	CTNAG	9 cut(s)	335, 701, 706, 1524, 1587, 1624, 1762, 1829, 1958
DpnI	GATC	5 cut(s)	59, 63, 748, 867, 1731
DpnII	GATC	5 cut(s)	57, 61, 746, 865, 1729
DraI	TTTAAA	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	1225
EagI	CGGCCG	1 cut(s)	1225
Eam1104I	CTCTTC	6 cut(s)	269, 295, 1155, 1453, 1841, 1976
EarI	CTCTTC	6 cut(s)	269, 295, 1155, 1453, 1841, 1976
EciI	GGCGGA	1 cut(s)	1499
Ecl136II	GAGCTC	1 cut(s)	705
EclXI	CGGCCG	1 cut(s)	1225
Eco130I	CCWWGG	3 cut(s)	873, 1033, 1689
Eco147I	AGGCCT	2 cut(s)	616, 1802
Eco24I	GRGCYC	1 cut(s)	707
Eco47I	GGWCC	5 cut(s)	972, 1289, 1328, 1777, 1862
Eco52I	CGGCCG	1 cut(s)	1225
Eco53kI	GAGCTC	1 cut(s)	705
Eco57I	CTGAAG	4 cut(s)	243, 1107, 1434, 1892
Eco88I	CYCGRG	1 cut(s)	894
EcoICRI	GAGCTC	1 cut(s)	705
EcoO109I	RGGNCCY	3 cut(s)	972, 1328, 1862
EcoRI	GAATTC	2 cut(s)	1482, 2125
EcoRII	CCWGG	2 cut(s)	109, 1678
EcoT14I	CCWWGG	3 cut(s)	873, 1033, 1689
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	3 cut(s)	873, 1033, 1689
FalI	AAGNNNNNCTT	2 cut(s)	1031, 1063
FaqI	GGGAC	3 cut(s)	844, 985, 1314
Fnu4HI	GCNGC	8 cut(s)	1023, 1126, 1129, 1141, 1228, 1368, 1725, 1834
FokI	GGATG	6 cut(s)	109, 506, 1016, 1803, 1931, 2031
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	8 cut(s)	1023, 1126, 1129, 1141, 1228, 1368, 1725, 1834
FspBI	CTAG	3 cut(s)	947, 1542, 2072
GluI	GCNGC	8 cut(s)	1023, 1126, 1129, 1141, 1228, 1368, 1725, 1834
GsuI	CTGGAG	3 cut(s)	569, 723, 2022
HaeIII	GGCC	7 cut(s)	42, 616, 1072, 1227, 1578, 1802, 1988
HapII	CCGG	6 cut(s)	147, 156, 576, 1224, 1697, 1807
HgaI	GACGC	2 cut(s)	291, 575
HincII	GTYRAC	2 cut(s)	1417, 1853
HindII	GTYRAC	2 cut(s)	1417, 1853
HindIII	AAGCTT	3 cut(s)	662, 795, 1955
HpaII	CCGG	6 cut(s)	147, 156, 576, 1224, 1697, 1807
HphI	GGTGA	2 cut(s)	590, 2021
Hpy166II	GTNNAC	2 cut(s)	1417, 1853
Hpy8I	GTNNAC	2 cut(s)	1417, 1853
Hpy99I	CGWCG	2 cut(s)	184, 1211
HpyAV	CCTTC	9 cut(s)	575, 1083, 1461, 1548, 1585, 1813, 1875, 1916, 2107
HpyCH4III	ACNGT	7 cut(s)	48, 992, 1421, 1774, 1994, 2110, 2154
HpyCH4IV	ACGT	2 cut(s)	1618, 2079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 1137
HpyF3I	CTNAG	9 cut(s)	335, 701, 706, 1524, 1587, 1624, 1762, 1829, 1958
HpySE526I	ACGT	2 cut(s)	1618, 2079
KflI	GGGWCCC	1 cut(s)	1328
Kpn2I	TCCGGA	1 cut(s)	1806
KpnI	GGTACC	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	57, 61, 746, 865, 1729
LmnI	GCTCC	3 cut(s)	550, 1512, 1646
Lsp1109I	GCAGC	7 cut(s)	1009, 1112, 1140, 1152, 1379, 1711, 1845
LweI	GCATC	6 cut(s)	307, 667, 1163, 1354, 1748, 1825
MaeI	CTAG	3 cut(s)	947, 1542, 2072
MaeII	ACGT	2 cut(s)	1618, 2079
MaeIII	GTNAC	3 cut(s)	303, 1619, 1711
MalI	GATC	5 cut(s)	59, 63, 748, 867, 1731
MboI	GATC	5 cut(s)	57, 61, 746, 865, 1729
MfeI	CAATTG	1 cut(s)	838
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	707
MluI	ACGCGT	1 cut(s)	300
MlyI	GAGTC	3 cut(s)	607, 1378, 1858
MmeI	TCCRAC	2 cut(s)	471, 566
MroI	TCCGGA	1 cut(s)	1806
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	9 cut(s)	93, 129, 192, 219, 537, 653, 1052, 1581, 1797
MslI	CAYNNNNRTG	1 cut(s)	1379
MspA1I	CMGCKG	1 cut(s)	1125
MspI	CCGG	6 cut(s)	147, 156, 576, 1224, 1697, 1807
MspR9I	CCNGG	4 cut(s)	111, 147, 1680, 1698
MunI	CAATTG	1 cut(s)	838
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	2 cut(s)	111, 1680
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	39, 1137
NciI	CCSGG	2 cut(s)	147, 1698
NcoI	CCATGG	1 cut(s)	1033
NdeII	GATC	5 cut(s)	57, 61, 746, 865, 1729
NlaIV	GGNNCC	6 cut(s)	283, 527, 973, 1329, 1330, 1695
NmuCI	GTSAC	2 cut(s)	303, 1711
NspI	RCATGY	2 cut(s)	218, 837
PaeR7I	CTCGAG	1 cut(s)	894
PagI	TCATGA	1 cut(s)	757
PceI	AGGCCT	2 cut(s)	616, 1802
PciI	ACATGT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	845
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	8 cut(s)	371, 669, 695, 725, 1082, 1358, 1683, 1745
PfoI	TCCNGGA	2 cut(s)	109, 1678
PkrI	GCNGC	8 cut(s)	1024, 1127, 1130, 1142, 1229, 1369, 1726, 1835
PleI	GAGTC	3 cut(s)	606, 1378, 1857
PpsI	GAGTC	3 cut(s)	606, 1378, 1857
Ppu21I	YACGTR	1 cut(s)	2080
PpuMI	RGGWCCY	3 cut(s)	972, 1328, 1862
PscI	ACATGT	1 cut(s)	214
PshAI	GACNNNNGTC	1 cut(s)	1326
PsiI	TTATAA	2 cut(s)	1101, 1254
Psp124BI	GAGCTC	1 cut(s)	707
Psp5II	RGGWCCY	3 cut(s)	972, 1328, 1862
Psp6I	CCWGG	2 cut(s)	109, 1678
PspGI	CCWGG	2 cut(s)	109, 1678
PspN4I	GGNNCC	6 cut(s)	283, 527, 973, 1329, 1330, 1695
PspPI	GGNCC	7 cut(s)	972, 1289, 1328, 1576, 1777, 1862, 1986
PspPPI	RGGWCCY	3 cut(s)	972, 1328, 1862
PspXI	VCTCGAGB	1 cut(s)	894
PsrI	GAACNNNNNNTAC	2 cut(s)	1604, 1636
PstI	CTGCAG	1 cut(s)	1130
PsuI	RGATCY	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	1125
RsaI	GTAC	3 cut(s)	137, 527, 1423
RsaNI	GTAC	3 cut(s)	136, 526, 1422
RseI	CAYNNNNRTG	1 cut(s)	1379
SacI	GAGCTC	1 cut(s)	707
SaqAI	TTAA	9 cut(s)	93, 129, 192, 219, 537, 653, 1052, 1581, 1797
SatI	GCNGC	8 cut(s)	1023, 1126, 1129, 1141, 1228, 1368, 1725, 1834
Sau3AI	GATC	5 cut(s)	57, 61, 746, 865, 1729
Sau96I	GGNCC	7 cut(s)	972, 1289, 1328, 1576, 1777, 1862, 1986
SchI	GAGTC	3 cut(s)	607, 1378, 1858
ScrFI	CCNGG	4 cut(s)	111, 147, 1680, 1698
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	6 cut(s)	307, 667, 1163, 1354, 1748, 1825
SfcI	CTRYAG	2 cut(s)	629, 1126
Sfr274I	CTCGAG	1 cut(s)	894
SinI	GGWCC	5 cut(s)	972, 1289, 1328, 1777, 1862
SlaI	CTCGAG	1 cut(s)	894
SmiMI	CAYNNNNRTG	1 cut(s)	1379
SmlI	CTYRAG	2 cut(s)	894, 1840
SmoI	CTYRAG	2 cut(s)	894, 1840
SseBI	AGGCCT	2 cut(s)	616, 1802
SsiI	CCGC	4 cut(s)	1228, 1345, 1510, 2177
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	3 cut(s)	947, 1542, 2072
SstI	GAGCTC	1 cut(s)	707
StuI	AGGCCT	2 cut(s)	616, 1802
StyD4I	CCNGG	4 cut(s)	109, 145, 1678, 1696
StyI	CCWWGG	3 cut(s)	873, 1033, 1689
TaaI	ACNGT	7 cut(s)	48, 992, 1421, 1774, 1994, 2110, 2154
TaiI	ACGT	2 cut(s)	1621, 2082
TaqI	TCGA	6 cut(s)	60, 601, 895, 1489, 2023, 2140
TauI	GCSGC	1 cut(s)	1230
TfiI	GAWTC	8 cut(s)	371, 669, 695, 725, 1082, 1358, 1683, 1745
Tru1I	TTAA	9 cut(s)	93, 129, 192, 219, 537, 653, 1052, 1581, 1797
Tru9I	TTAA	9 cut(s)	93, 129, 192, 219, 537, 653, 1052, 1581, 1797
TscAI	CASTG	2 cut(s)	997, 1189
TseFI	GTSAC	2 cut(s)	303, 1711
TseI	GCWGC	7 cut(s)	1022, 1125, 1128, 1140, 1367, 1724, 1833
Tsp45I	GTSAC	2 cut(s)	303, 1711
TspGWI	ACGGA	2 cut(s)	322, 662
TspRI	CASTG	2 cut(s)	997, 1189
VpaK11BI	GGWCC	5 cut(s)	972, 1289, 1328, 1777, 1862
XapI	RAATTY	5 cut(s)	920, 1166, 1482, 2099, 2125
XbaI	TCTAGA	1 cut(s)	1541
XceI	RCATGY	2 cut(s)	218, 837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1065
XhoI	CTCGAG	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	3 cut(s)	947, 1542, 2072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.