Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008349

Physical Location & Seq

Genomic Coordinates Reverse (-)

27767519 .. 27773428

Gene Structure 5910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1248700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCGTGGTTCTGGAAAGAAATCAAACCTCAAGGAGTCCGGGAAATCTGGTTATTCCAGTTCCGTGGCGAAGCTGATTTCATCACCAAGTTTTAAAAAAGGCGTAAAGGTTCCCCGTGTTAAAAAACTAAGACCAAAGTCGTCCAAGACTATTATCGCGTCAGCCTTGTCAAAGAAGAGAGGTGCCGACTCTTCAAGCAAAGCATCAACGTCAAGGAATAATGATACTAACAAAAAATTGATGAGTAGAAAAGAATTTCATAAAGTGCATGATACAGATTCTTCCAAAAAGCCGTCTTCAGTGAAACTTCAGGACCACAAGTTATCAGACAATGGCTCTGATGAGAAAGGGGAGAAAAGGAGGAGAAAGAAGAAACCGAAAAAGGATAAGGTGGAGTTGGATGAAACTTCTCGCCTGCAGAGGAGGACAAGGTACCTGTTGATTAAAATAAAGCTGGAGCAGAACCTTATTGATGCTTATGCTGGTGAAGGTTGGAAGGGTCAGAGTCGAGAAAAGATTAGGCCAGAAATGGAACTGCGGAGAGCCAATAAGCAGATTTTAAATTGCAAGCTTGGAATCCGCGATGCCATCCAACAACTGGATTCTCTGAGCTCAGTAGGAAGCATCGCAGATTCTTTTATTGCTCCAGATGGATCTGTTTCTCATGAACATATATTCTGTGCACAGTGCAAGTTGAACGAAGCTTTGCCTGATAATGATATTATACTGTGTGATGGAACATGCAATTGTGCATTCCACCAAAAATGTCTTGATCCTCCCTTGGATACTGAAAATATTCCTCGAGGAGAGCAGGGTTGGTTTTGCAAATTTTGCGAGTGTAAAATGGAAATACTAGAATTAGTCAATGCTCACCTTGGGACCTGCTTTCCGATGAACAGTGGTTGGCAGGATGTCTTCAAGGAAGAAGCCGCTTTCCCCGATGGCAAGAATTCCTTATTAAATCCAGATGAAGAATGGCCTTCGGATGATTCTGAAGATGATGATTATAAACCAGAGAGGAATGTGAACAGCTGCAGCATCAGCAGGGGAGGCAGCGATGACAATGTATCAGAAGAGGAATTGTCAACTGATGTCAGTGTAGGTTCTGATGAATCTACTGATGGGGAAATTGTTTCTGGCCGCAGACAGAGAAGAAGTGTTGATTATAAGAAGTTATATGATGAAATGTTTGGAAAAGATGGTCCTTTGCTCGAACAAATCAGTGATGATGAAGACTGGGGTCCTGTTAAACGAAAGCGAAGAGAAAAAGAATCTGATGCGGCCAGCACCCTTATGACTCTCTATGAAAGCGAAAGAAATCCAGATGTTGACCATACAGAAGTGAAAAATATACGTTCTTCTGATACGCAAGTTAGAAGGTCCTGCTTCCGAATTCCTCGAAAGGCGGTAGAGAAGCTCCGCCAAGTGTTTTCTGAGAATGAACTTCCTTCTAGAGCTGTCAAGGACAATCTTTCAAAGGAGTTGGGCCTTAATCCTGACAAGGTTAGTAAATGGTTCAAGAACGCACGTTACTTAGCTCTGAAAACCAGAAAGGAAGCGAGTGGTAAAGACCATCAGACTTTTACTCCAGGAATCTCCAAGGAACCAGGATATGAAAATGTGACTGGAAAAGCTGCTGATCTCATGGCTTCAGATTCTGATGACGATACCTTAGCTGAAACTGTGGTCCATTCCCCGAAGAATGTTAACGCAGCTTTCCGGAGAAAGCATCCAAAATCACTAAGTAGCCCTTTGAGGAAAAGTCAACAGAAAGCCCCTTCGTGTGGGTCACCCTCAAGGAGCAACAAGGATGGAAAAGAGTCAAGCGATGATGTGAGCTTGAAGAAGCTTATGAACACAAGAACAAAGGAGAAGCGGGCCAACCTTATCGCTGGAGGCGGTGGAGATGGATGTCGAGTTGCAGAGCTGGAAATGGAGAGACTATGCAAAGCCAAAGGTAGGCTAGAACATATGAGGCAGAAATTACTGAAATTGCAAAATGTGAAAGCAAAGCAGAAATCGAATAAATCTCTCTTGCATGAGCACACTGTGATTTATGTTCCAGTAGCACAACTGCGGGAAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

697

Amino Acids

78.1

Weight (kDa)

9.24

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	227 - 278	4.1e-09	PHD-finger
Homeodomain	PF00046	467 - 511	3.4e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29940 AT4G29940
fragaria_vesca	FvH4_4g07290 FvH4_4g07290
malus_domestica	MD13G1241800.v1.1 MD16G1248700.v1.1
prunus_persica	Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1 Prupe.1G075500_v2.0.a1
pyrus_communis	pycom13g21370 pycom16g20840
rosa_chinensis	RchiOBHm_Chr4g0399601
rosa_laevigata	RLG00000009259
rosa_multiflora	Rmu_sc0002285.1_g000037
rosa_roxburghii	Rroxscaffold_5G00344520
rosa_rugosa	Rorug04G0017600
rosa_samantha	Rh4AG095500 Rh4BG093000 Rh4CG104000 Rh4DG087900
rosa_wichuraiana	Rw4G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1008, 1167
AbsI	CCTCGAGG	1 cut(s)	801
Acc36I	ACCTGC	1 cut(s)	890
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	182, 432
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccII	CGCG	2 cut(s)	158, 582
AccIII	TCCGGA	1 cut(s)	1719
AclWI	GGATC	2 cut(s)	661, 767
AcoI	YGGCCR	2 cut(s)	1138, 1281
AcsI	RAATTY	4 cut(s)	254, 827, 949, 1392
AcuI	CTGAAG	4 cut(s)	282, 293, 1014, 1635
AdeI	CACNNNGTG	1 cut(s)	2050
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	598, 1784, 1959
AgsI	TTSAA	6 cut(s)	195, 697, 919, 1476, 1519, 1843
AjnI	CCWGG	2 cut(s)	1588, 1606
Alw21I	GWGCWC	3 cut(s)	614, 685, 2046
Alw26I	GTCTC	1 cut(s)	1933
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	2 cut(s)	661, 767
AlwNI	CAGNNNCTG	1 cut(s)	1658
Ama87I	CYCGRG	1 cut(s)	801
Aor13HI	TCCGGA	1 cut(s)	1719
AoxI	GGCC	6 cut(s)	521, 977, 1138, 1281, 1486, 1878
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	5 cut(s)	1032, 1035, 1053, 1634, 1712
ApoI	RAATTY	4 cut(s)	254, 827, 949, 1392
Asp700I	GAANNNNTTC	1 cut(s)	795
Asp718I	GGTACC	1 cut(s)	432
AspS9I	GGNCC	8 cut(s)	313, 879, 1202, 1241, 1380, 1486, 1687, 1878
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	4 cut(s)	75, 497, 863, 1782
AvaI	CYCGRG	1 cut(s)	801
AvaII	GGWCC	6 cut(s)	313, 879, 1202, 1241, 1380, 1687
BaeGI	GKGCMC	1 cut(s)	685
BaeI	ACNNNNGTAYC	2 cut(s)	1356, 1389
BanI	GGYRCC	2 cut(s)	182, 432
BanII	GRGCYC	1 cut(s)	614
BbsI	GAAGAC	3 cut(s)	288, 907, 1239
Bbv12I	GWGCWC	3 cut(s)	614, 685, 2046
BbvI	GCAGC	5 cut(s)	1019, 1047, 1065, 1621, 1724
BccI	CCATC	9 cut(s)	596, 644, 728, 935, 1115, 1193, 1581, 1805, 1901
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	1590, 1608
BciVI	GTATCC	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	1933
BfaI	CTAG	3 cut(s)	854, 1452, 1964
BfmI	CTRYAG	2 cut(s)	416, 1033
BfuAI	ACCTGC	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	778
BisI	GCNGC	8 cut(s)	930, 1033, 1036, 1054, 1141, 1281, 1635, 1713
BlsI	GCNGC	8 cut(s)	931, 1034, 1037, 1055, 1142, 1282, 1636, 1714
Bme1390I	CCNGG	3 cut(s)	40, 1590, 1608
Bme18I	GGWCC	6 cut(s)	313, 879, 1202, 1241, 1380, 1687
BmeT110I	CYCGRG	1 cut(s)	801
BmgT120I	GGNCC	8 cut(s)	313, 879, 1202, 1241, 1380, 1486, 1687, 1878
BmiI	GGNNCC	6 cut(s)	111, 184, 434, 880, 1242, 1605
BmrFI	CCNGG	3 cut(s)	40, 1590, 1608
BmrI	ACTGGG	1 cut(s)	1246
BmsI	GCATC	7 cut(s)	212, 463, 574, 633, 1047, 1267, 1738
BmuI	ACTGGG	1 cut(s)	1246
BoxI	GACNNNNGTC	2 cut(s)	136, 1239
BpiI	GAAGAC	3 cut(s)	288, 907, 1239
BpmI	CTGGAG	4 cut(s)	476, 630, 1572, 1914
Bpu10I	CCTNAGC	1 cut(s)	1672
BpuEI	CTTGAG	2 cut(s)	14, 1780
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	4 cut(s)	63, 780, 874, 1599
BsaWI	WCCGGW	1 cut(s)	1719
BsaXI	ACNNNNNCTCC	2 cut(s)	1570, 1600
Bsc4I	CCNNNNNNNGG	3 cut(s)	598, 1784, 1959
Bse1I	ACTGG	5 cut(s)	57, 603, 1241, 1630, 2063
BseAI	TCCGGA	1 cut(s)	1719
BseBI	CCWGG	2 cut(s)	1590, 1608
BseDI	CCNNGG	4 cut(s)	63, 780, 874, 1599
BseGI	GGATG	7 cut(s)	406, 588, 916, 991, 1729, 1816, 1916
BseLI	CCNNNNNNNGG	3 cut(s)	598, 1784, 1959
BseMII	CTCAG	3 cut(s)	599, 627, 1425
BseNI	ACTGG	5 cut(s)	57, 603, 1241, 1630, 2063
BseRI	GAGGAG	3 cut(s)	376, 436, 819
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	5 cut(s)	1019, 1047, 1065, 1621, 1724
Bsh1236I	CGCG	2 cut(s)	158, 582
BshFI	GGCC	6 cut(s)	523, 979, 1140, 1283, 1488, 1880
BshNI	GGYRCC	2 cut(s)	182, 432
BsiHKAI	GWGCWC	3 cut(s)	614, 685, 2046
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	2 cut(s)	39, 1720
BslFI	GGGAC	1 cut(s)	892
BslI	CCNNNNNNNGG	3 cut(s)	598, 1784, 1959
BsmAI	GTCTC	1 cut(s)	1933
BsmFI	GGGAC	1 cut(s)	892
BsmI	GAATGC	1 cut(s)	752
BsnI	GGCC	6 cut(s)	523, 979, 1140, 1283, 1488, 1880
BsoBI	CYCGRG	1 cut(s)	801
Bsp1286I	GDGCHC	3 cut(s)	614, 685, 2046
Bsp13I	TCCGGA	1 cut(s)	1719
Bsp143I	GATC	3 cut(s)	653, 772, 1639
BspANI	GGCC	6 cut(s)	523, 979, 1140, 1283, 1488, 1880
BspCNI	CTCAG	3 cut(s)	600, 626, 1426
BspEI	TCCGGA	1 cut(s)	1719
BspFNI	CGCG	2 cut(s)	158, 582
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	6 cut(s)	111, 184, 434, 880, 1242, 1605
BspMAI	CTGCAG	2 cut(s)	420, 1037
BspMI	ACCTGC	1 cut(s)	890
BspPI	GGATC	2 cut(s)	661, 767
BspT107I	GGYRCC	2 cut(s)	182, 432
BsrI	ACTGG	5 cut(s)	57, 603, 1241, 1630, 2063
BssECI	CCNNGG	4 cut(s)	63, 780, 874, 1599
BssMI	GATC	3 cut(s)	653, 772, 1639
BssT1I	CCWWGG	3 cut(s)	780, 874, 1599
Bst2UI	CCWGG	2 cut(s)	1590, 1608
Bst4CI	ACNGT	5 cut(s)	687, 729, 899, 1684, 2050
Bst6I	CTCTTC	4 cut(s)	170, 196, 1068, 1255
BstAPI	GCANNNNNTGC	1 cut(s)	831
BstC8I	GCNNGC	4 cut(s)	416, 569, 1285, 1878
BstDEI	CTNAG	7 cut(s)	128, 608, 613, 1434, 1534, 1672, 1742
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	1788
BstF5I	GGATG	7 cut(s)	406, 588, 916, 991, 1729, 1816, 1916
BstFNI	CGCG	2 cut(s)	158, 582
BstKTI	GATC	3 cut(s)	656, 775, 1642
BstMAI	GTCTC	1 cut(s)	1933
BstMBI	GATC	3 cut(s)	653, 772, 1639
BstMWI	GCNNNNNNNGC	3 cut(s)	831, 1041, 1050
BstNI	CCWGG	2 cut(s)	1590, 1608
BstNSI	RCATGY	1 cut(s)	744
BstPAI	GACNNNNGTC	2 cut(s)	136, 1239
BstPI	GGTNACC	1 cut(s)	1788
BstSCI	CCNGG	3 cut(s)	38, 1588, 1606
BstSFI	CTRYAG	2 cut(s)	416, 1033
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	2 cut(s)	158, 582
BstV1I	GCAGC	5 cut(s)	1019, 1047, 1065, 1621, 1724
BstV2I	GAAGAC	3 cut(s)	288, 907, 1239
BstX2I	RGATCY	1 cut(s)	653
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	778
BsuRI	GGCC	6 cut(s)	523, 979, 1140, 1283, 1488, 1880
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	4 cut(s)	597, 610, 1071, 1842
BtsCI	GGATG	7 cut(s)	406, 588, 916, 991, 1729, 1816, 1916
BtsIMutI	CAGTG	6 cut(s)	306, 692, 904, 1102, 1228, 2046
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	4 cut(s)	416, 569, 1285, 1878
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	8 cut(s)	313, 879, 1202, 1241, 1380, 1486, 1687, 1878
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	5 cut(s)	269, 665, 741, 1645, 2039
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	7 cut(s)	128, 608, 613, 1434, 1534, 1672, 1742
DpnI	GATC	3 cut(s)	655, 774, 1641
DpnII	GATC	3 cut(s)	653, 772, 1639
DraI	TTTAAA	2 cut(s)	94, 561
DraIII	CACNNNGTG	1 cut(s)	2050
EaeI	YGGCCR	2 cut(s)	1138, 1281
Eam1104I	CTCTTC	4 cut(s)	170, 196, 1068, 1255
EarI	CTCTTC	4 cut(s)	170, 196, 1068, 1255
EciI	GGCGGA	1 cut(s)	1409
Ecl136II	GAGCTC	1 cut(s)	612
Eco130I	CCWWGG	3 cut(s)	780, 874, 1599
Eco24I	GRGCYC	1 cut(s)	614
Eco47I	GGWCC	6 cut(s)	313, 879, 1202, 1241, 1380, 1687
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	4 cut(s)	282, 293, 1014, 1635
Eco88I	CYCGRG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	1788
EcoICRI	GAGCTC	1 cut(s)	612
EcoO109I	RGGNCCY	3 cut(s)	879, 1241, 1380
EcoO65I	GGTNACC	1 cut(s)	1788
EcoRI	GAATTC	2 cut(s)	949, 1392
EcoRII	CCWGG	2 cut(s)	1588, 1606
EcoT14I	CCWWGG	3 cut(s)	780, 874, 1599
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	3 cut(s)	780, 874, 1599
FaeI	CATG	5 cut(s)	272, 668, 744, 1648, 2042
FalI	AAGNNNNNCTT	4 cut(s)	938, 970, 1735, 1767
FaqI	GGGAC	1 cut(s)	892
FatI	CATG	5 cut(s)	268, 664, 740, 1644, 2038
FauI	CCCGC	2 cut(s)	1869, 2070
FauNDI	CATATG	1 cut(s)	1971
Fnu4HI	GCNGC	8 cut(s)	930, 1033, 1036, 1054, 1141, 1281, 1635, 1713
FokI	GGATG	7 cut(s)	413, 575, 923, 998, 1716, 1823, 1923
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	8 cut(s)	930, 1033, 1036, 1054, 1141, 1281, 1635, 1713
FspBI	CTAG	3 cut(s)	854, 1452, 1964
GluI	GCNGC	8 cut(s)	930, 1033, 1036, 1054, 1141, 1281, 1635, 1713
GsuI	CTGGAG	4 cut(s)	476, 630, 1572, 1914
HaeIII	GGCC	6 cut(s)	523, 979, 1140, 1283, 1488, 1880
HapII	CCGG	2 cut(s)	39, 1720
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	5 cut(s)	272, 668, 744, 1648, 2042
HincII	GTYRAC	4 cut(s)	1086, 1330, 1708, 1766
HindII	GTYRAC	4 cut(s)	1086, 1330, 1708, 1766
HindIII	AAGCTT	3 cut(s)	569, 702, 1847
HpaI	GTTAAC	1 cut(s)	1708
HpaII	CCGG	2 cut(s)	39, 1720
HphI	GGTGA	4 cut(s)	75, 497, 863, 1782
Hpy166II	GTNNAC	6 cut(s)	683, 1027, 1086, 1330, 1708, 1766
Hpy8I	GTNNAC	6 cut(s)	683, 1027, 1086, 1330, 1708, 1766
HpyAV	CCTTC	6 cut(s)	482, 490, 990, 1371, 1458, 1788
HpyCH4III	ACNGT	5 cut(s)	687, 729, 899, 1684, 2050
HpyCH4IV	ACGT	3 cut(s)	209, 1354, 1528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	831, 1041, 1050
HpyF3I	CTNAG	7 cut(s)	128, 608, 613, 1434, 1534, 1672, 1742
HpySE526I	ACGT	3 cut(s)	209, 1354, 1528
Hsp92II	CATG	5 cut(s)	272, 668, 744, 1648, 2042
Kpn2I	TCCGGA	1 cut(s)	1719
KpnI	GGTACC	1 cut(s)	436
KspAI	GTTAAC	1 cut(s)	1708
Kzo9I	GATC	3 cut(s)	653, 772, 1639
LmnI	GCTCC	4 cut(s)	457, 649, 1422, 1800
Lsp1109I	GCAGC	5 cut(s)	1019, 1047, 1065, 1621, 1724
LweI	GCATC	7 cut(s)	212, 463, 574, 633, 1047, 1267, 1738
MaeI	CTAG	3 cut(s)	854, 1452, 1964
MaeII	ACGT	3 cut(s)	209, 1354, 1528
MaeIII	GTNAC	3 cut(s)	1529, 1621, 1788
MalI	GATC	3 cut(s)	655, 774, 1641
MboI	GATC	3 cut(s)	653, 772, 1639
MfeI	CAATTG	1 cut(s)	745
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	3 cut(s)	614, 685, 2046
MlyI	GAGTC	5 cut(s)	44, 182, 514, 1291, 1829
MmeI	TCCRAC	3 cut(s)	378, 473, 616
MroI	TCCGGA	1 cut(s)	1719
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	8 cut(s)	93, 120, 444, 560, 959, 1248, 1491, 1707
MslI	CAYNNNNRTG	1 cut(s)	1292
MspA1I	CMGCKG	1 cut(s)	1032
MspI	CCGG	2 cut(s)	39, 1720
MspR9I	CCNGG	3 cut(s)	40, 1590, 1608
MunI	CAATTG	1 cut(s)	745
Mva1269I	GAATGC	1 cut(s)	752
MvaI	CCWGG	2 cut(s)	1590, 1608
MvnI	CGCG	2 cut(s)	158, 582
MwoI	GCNNNNNNNGC	3 cut(s)	831, 1041, 1050
NciI	CCSGG	1 cut(s)	40
NdeI	CATATG	1 cut(s)	1971
NdeII	GATC	3 cut(s)	653, 772, 1639
NlaIII	CATG	5 cut(s)	272, 668, 744, 1648, 2042
NlaIV	GGNNCC	6 cut(s)	111, 184, 434, 880, 1242, 1605
NmuCI	GTSAC	2 cut(s)	1621, 1788
NspI	RCATGY	1 cut(s)	744
PaeR7I	CTCGAG	1 cut(s)	801
PagI	TCATGA	1 cut(s)	664
PctI	GAATGC	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	9 cut(s)	278, 576, 602, 632, 989, 1112, 1271, 1593, 1655
PflMI	CCANNNNNTGG	1 cut(s)	598
PfoI	TCCNGGA	2 cut(s)	38, 1588
PkrI	GCNGC	8 cut(s)	931, 1034, 1037, 1055, 1142, 1282, 1636, 1714
PleI	GAGTC	5 cut(s)	43, 182, 513, 1291, 1828
PpsI	GAGTC	5 cut(s)	43, 182, 513, 1291, 1828
PpuMI	RGGWCCY	3 cut(s)	879, 1241, 1380
PshAI	GACNNNNGTC	2 cut(s)	136, 1239
PsiI	TTATAA	2 cut(s)	1008, 1167
Psp124BI	GAGCTC	1 cut(s)	614
Psp5II	RGGWCCY	3 cut(s)	879, 1241, 1380
Psp6I	CCWGG	2 cut(s)	1588, 1606
PspEI	GGTNACC	1 cut(s)	1788
PspGI	CCWGG	2 cut(s)	1588, 1606
PspN4I	GGNNCC	6 cut(s)	111, 184, 434, 880, 1242, 1605
PspPI	GGNCC	8 cut(s)	313, 879, 1202, 1241, 1380, 1486, 1687, 1878
PspPPI	RGGWCCY	3 cut(s)	879, 1241, 1380
PspXI	VCTCGAGB	1 cut(s)	801
PsrI	GAACNNNNNNTAC	2 cut(s)	1514, 1546
PstI	CTGCAG	2 cut(s)	420, 1037
PstNI	CAGNNNCTG	1 cut(s)	1658
PsuI	RGATCY	1 cut(s)	653
PvuII	CAGCTG	1 cut(s)	1032
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	1292
SacI	GAGCTC	1 cut(s)	614
SaqAI	TTAA	8 cut(s)	93, 120, 444, 560, 959, 1248, 1491, 1707
SatI	GCNGC	8 cut(s)	930, 1033, 1036, 1054, 1141, 1281, 1635, 1713
Sau3AI	GATC	3 cut(s)	653, 772, 1639
Sau96I	GGNCC	8 cut(s)	313, 879, 1202, 1241, 1380, 1486, 1687, 1878
SchI	GAGTC	5 cut(s)	44, 182, 514, 1291, 1829
ScrFI	CCNGG	3 cut(s)	40, 1590, 1608
SduI	GDGCHC	3 cut(s)	614, 685, 2046
SfaNI	GCATC	7 cut(s)	212, 463, 574, 633, 1047, 1267, 1738
SfcI	CTRYAG	2 cut(s)	416, 1033
Sfr274I	CTCGAG	1 cut(s)	801
SinI	GGWCC	6 cut(s)	313, 879, 1202, 1241, 1380, 1687
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	1292
SmlI	CTYRAG	3 cut(s)	29, 801, 1795
SmoI	CTYRAG	3 cut(s)	29, 801, 1795
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	3 cut(s)	854, 1452, 1964
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	38, 1588, 1606
StyI	CCWWGG	3 cut(s)	780, 874, 1599
TaaI	ACNGT	5 cut(s)	687, 729, 899, 1684, 2050
TaiI	ACGT	3 cut(s)	212, 1357, 1531
TaqI	TCGA	6 cut(s)	508, 802, 1212, 1399, 1915, 2021
TauI	GCSGC	3 cut(s)	932, 1143, 1283
TfiI	GAWTC	9 cut(s)	278, 576, 602, 632, 989, 1112, 1271, 1593, 1655
Tru1I	TTAA	8 cut(s)	93, 120, 444, 560, 959, 1248, 1491, 1707
Tru9I	TTAA	8 cut(s)	93, 120, 444, 560, 959, 1248, 1491, 1707
TscAI	CASTG	6 cut(s)	306, 692, 904, 1102, 1228, 2053
TseFI	GTSAC	2 cut(s)	1621, 1788
TseI	GCWGC	5 cut(s)	1032, 1035, 1053, 1634, 1712
Tsp45I	GTSAC	2 cut(s)	1621, 1788
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	6 cut(s)	306, 692, 904, 1102, 1228, 2053
Van91I	CCANNNNNTGG	1 cut(s)	598
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	6 cut(s)	313, 879, 1202, 1241, 1380, 1687
XapI	RAATTY	4 cut(s)	254, 827, 949, 1392
XbaI	TCTAGA	1 cut(s)	1451
XceI	RCATGY	1 cut(s)	744
XcmI	CCANNNNNNNNNTGG	2 cut(s)	595, 972
XhoI	CTCGAG	1 cut(s)	801
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	3 cut(s)	854, 1452, 1964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.