MD13G1243900.v1.1

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011878
Physical Location & Seq
Reverse (-)
25453565 .. 25455893
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1243900.v1.1.491

Sequence Viewer

Length: 732 bp
ATGATGCTTCCAACTTTAGGCAAAGATCCTTCTTTTGGTCCAGTCATATCTGCTTTACTCGACCCAATTGTTAAGATATGTGAGCAAGCTGCAGAGGCGCACAAGTCCAAGGGAGTTGGCCACTCTTCAAGAAGAAGTAAGATGAGTTCTGACTTAGGTCAATTTGGTAAATCACCAGTTGACGCACTATTGTCCAGCAGCAATTCTGCCCCGTCGTCTCAGTCTAGTGAAACATCCTCTAAAATTTTCCTCATCAATTGTTTGTGTGCCATCCAACAACCATTGCTTGGGCATGAGGTCGCAGTGGAATATGTGAAGAACCTGGGGATGATGATAGATAAGCACATGCAAGCCCTTGTAGAAAATGAAGTCGATACGATCCTTAAAAGATGTGGATTGTCGCAGAAGATGACTTACTTCCGTGACTCACTCAGCAAGGAGACTGGCACTACCCCATTGGTAGAGATAGAGGACACTTCTCCAGCATCTCTTTCCGAGTGTTTGAAGGCTTTCTTTGGGCTTGTCTTGGGAAGTGAAAGTTCCCTGCCTGAATTTGAGCAGATGCAGGTTCCGAAGTTGCGTTCTGAAGCTTGTATCCAAGTGGCTAAATCATTGGCCGAAGCATATGACCTTACGTACGAGGCAATTATGGATCCCAAAAATGACTACTCAGATCCTAAGTCGCTGGCGAGGCACCCTCCAGACCAGATAAGGACCATTTTAGGAATATGA

Protein Analysis

244

Amino Acids

26.43

Weight (kDa)

5.43

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG6_C PF20653 10 - 241 1.6e-37 Conserved Oligomeric Golgi complex subunit 6, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31780
fragaria_vesca FvH4_2g37280 FvH4_2g37280
malus_domestica MD13G1243800.v1.1 MD13G1243900.v1.1 MD13G1244000.v1.1
prunus_persica Prupe.1G077200_v2.0.a1
pyrus_communis pycom13g21520 pycom16g21010
rosa_chinensis RchiOBHm_Chr6g0304421
rosa_laevigata RLG00000010980
rosa_multiflora Rmu_ssc0000218.1_g000049
rosa_roxburghii Rroxscaffold_7G00163750
rosa_rugosa Rorug06G0331400
rosa_samantha Rh6AG444300 Rh6BG458100 Rh6CG457100 Rh6DG443800
rosa_wichuraiana Rw6G038570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 287
AclWI GGATC 5 cut(s) 20, 373, 647, 660, 668
AcoI YGGCCR 2 cut(s) 118, 615
AcsI RAATTY 2 cut(s) 243, 551
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 3 cut(s) 17, 35, 287
AgsI TTSAA 2 cut(s) 129, 505
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 2 cut(s) 89, 590
AluI AGCT 2 cut(s) 89, 590
Alw26I GTCTC 2 cut(s) 222, 434
AlwI GGATC 5 cut(s) 20, 373, 647, 660, 668
AoxI GGCC 2 cut(s) 118, 615
ApeKI GCWGC 2 cut(s) 89, 198
ApoI RAATTY 2 cut(s) 243, 551
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 38, 714
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 2 cut(s) 38, 714
BalI TGGCCA 1 cut(s) 120
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 693
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbvI GCAGC 2 cut(s) 76, 210
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 323
BciVI GTATCC 1 cut(s) 605
BcoDI GTCTC 2 cut(s) 222, 434
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 556
BfuI GTATCC 1 cut(s) 605
BisI GCNGC 2 cut(s) 90, 199
BlsI GCNGC 2 cut(s) 91, 200
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 38, 714
BmgT120I GGNCC 2 cut(s) 38, 714
BmiI GGNNCC 3 cut(s) 570, 654, 695
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 494, 552
BoxI GACNNNNGTC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 682, 714
BpmI CTGGAG 2 cut(s) 465, 684
BsaAI YACGTR 1 cut(s) 636
BsaJI CCNNGG 2 cut(s) 108, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 35, 287
Bse1I ACTGG 3 cut(s) 41, 176, 448
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 108, 322
BseGI GGATG 3 cut(s) 233, 270, 333
BseLI CCNNNNNNNGG 3 cut(s) 17, 35, 287
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 233, 445, 684
BseNI ACTGG 3 cut(s) 41, 176, 448
BseXI GCAGC 2 cut(s) 76, 210
BshFI GGCC 2 cut(s) 120, 617
BshNI GGYRCC 1 cut(s) 693
BsiWI CGTACG 1 cut(s) 636
BslI CCNNNNNNNGG 3 cut(s) 17, 35, 287
BsmAI GTCTC 2 cut(s) 222, 434
BsmBI CGTCTC 1 cut(s) 222
BsnI GGCC 2 cut(s) 120, 617
Bsp143I GATC 4 cut(s) 25, 378, 652, 673
BspANI GGCC 2 cut(s) 120, 617
BspCNI CTCAG 3 cut(s) 232, 444, 683
BspLI GGNNCC 3 cut(s) 570, 654, 695
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 5 cut(s) 20, 373, 647, 660, 668
BspT107I GGYRCC 1 cut(s) 693
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 3 cut(s) 41, 176, 448
BssECI CCNNGG 2 cut(s) 108, 322
BssMI GATC 4 cut(s) 25, 378, 652, 673
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 636
BstC8I GCNNGC 3 cut(s) 87, 351, 687
BstDEI CTNAG 5 cut(s) 154, 219, 431, 670, 678
BstF5I GGATG 3 cut(s) 233, 270, 333
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 4 cut(s) 28, 381, 655, 676
BstMAI GTCTC 2 cut(s) 222, 434
BstMBI GATC 4 cut(s) 25, 378, 652, 673
BstMWI GCNNNNNNNGC 2 cut(s) 95, 691
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 90
BstSNI TACGTA 1 cut(s) 636
BstV1I GCAGC 2 cut(s) 76, 210
BstX2I RGATCY 3 cut(s) 25, 652, 673
BstYI RGATCY 3 cut(s) 25, 652, 673
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 2 cut(s) 120, 617
BtsCI GGATG 3 cut(s) 233, 270, 333
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 3 cut(s) 87, 351, 687
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 38, 714
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 293, 346
CviJI RGCY 8 cut(s) 89, 120, 353, 509, 520, 590, 605, 617
CviKI_1 RGCY 8 cut(s) 89, 120, 353, 509, 520, 590, 605, 617
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 5 cut(s) 154, 219, 431, 670, 678
DpnI GATC 4 cut(s) 27, 380, 654, 675
DpnII GATC 4 cut(s) 25, 378, 652, 673
EaeI YGGCCR 2 cut(s) 118, 615
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco105I TACGTA 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 38, 714
Eco57I CTGAAG 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 2 cut(s) 296, 349
FaiI YATR 9 cut(s) 47, 79, 294, 312, 347, 625, 627, 650, 730
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FatI CATG 2 cut(s) 292, 345
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 90, 199
FokI GGATG 3 cut(s) 220, 257, 340
Fsp4HI GCNGC 2 cut(s) 90, 199
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 90, 199
GsuI CTGGAG 2 cut(s) 465, 684
HaeIII GGCC 2 cut(s) 120, 617
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 296, 349
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 1 cut(s) 425
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 151, 496, 573, 586, 673
Hpy188III TCNNGA 2 cut(s) 129, 701
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 39, 499
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 3 cut(s) 92, 349, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 691
HpyF3I CTNAG 5 cut(s) 154, 219, 431, 670, 678
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 2 cut(s) 296, 349
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 4 cut(s) 25, 378, 652, 673
Lsp1109I GCAGC 2 cut(s) 76, 210
LweI GCATC 2 cut(s) 494, 552
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 1 cut(s) 422
MalI GATC 4 cut(s) 27, 380, 654, 675
MboI GATC 4 cut(s) 25, 378, 652, 673
MboII GAAGA 4 cut(s) 117, 144, 328, 418
MfeI CAATTG 2 cut(s) 66, 256
MflI RGATCY 3 cut(s) 25, 652, 673
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 7 cut(s) 66, 161, 202, 243, 256, 551, 645
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 2 cut(s) 35, 298
MnlI CCTC 8 cut(s) 88, 247, 260, 289, 463, 634, 684, 708
Mox20I TGGCCA 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 1 cut(s) 120
MseI TTAA 2 cut(s) 72, 384
Msp20I TGGCCA 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 2 cut(s) 66, 256
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 95, 691
NdeI CATATG 1 cut(s) 625
NdeII GATC 4 cut(s) 25, 378, 652, 673
NlaIII CATG 2 cut(s) 296, 349
NlaIV GGNNCC 3 cut(s) 570, 654, 695
NmuCI GTSAC 1 cut(s) 422
NspI RCATGY 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 509
Pfl23II CGTACG 1 cut(s) 636
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 2 cut(s) 91, 200
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 636
PshAI GACNNNNGTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspLI CGTACG 1 cut(s) 636
PspN4I GGNNCC 3 cut(s) 570, 654, 695
PspPI GGNCC 2 cut(s) 38, 714
PsrI GAACNNNNNNTAC 2 cut(s) 130, 162
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 25, 652, 673
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 72, 384
SatI GCNGC 2 cut(s) 90, 199
Sau3AI GATC 4 cut(s) 25, 378, 652, 673
Sau96I GGNCC 2 cut(s) 38, 714
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 323
SetI ASST 8 cut(s) 91, 160, 300, 324, 570, 592, 633, 638
SfaNI GCATC 2 cut(s) 494, 552
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 38, 714
SnaBI TACGTA 1 cut(s) 636
Sse9I AATT 7 cut(s) 66, 161, 202, 243, 256, 551, 645
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 638
TaqI TCGA 2 cut(s) 60, 372
TasI AATT 7 cut(s) 66, 161, 202, 243, 256, 551, 645
Tru1I TTAA 2 cut(s) 72, 384
Tru9I TTAA 2 cut(s) 72, 384
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 89, 198
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 38, 714
XapI RAATTY 2 cut(s) 243, 551
XceI RCATGY 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.