pycom16g21010

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011878
Physical Location & Seq
Reverse (-)
19181862 .. 19182254
393 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g21010.1

Sequence Viewer

Length: 393 bp
ATGATAGCTAAACACATGCAAGCCCTTGTAGAAAATGAAGTCGATGTGATCCTTAAAAGATGTGGCTTGTCGCAGAAGATGCCTTACTTTCGCGACTCACTCAGCGAGGAGACTGGCACTACCCCATTGGTAGAGATAGATGACACTTCTCCAGCCTCTCTTTCCGAGTGTTTGAAGGCTTTCTTTGGGCTTGTTTTGGGAAGCGAGAGTTCTCTGCCAGAATTTGAGCAGATGCAGGTTCCAAAGTTGCGTTCTGAAGCTTGTATCCAAGTGGCTAAATCATTGGCCGAAGCATATGACATTACATATGAAGCAATTATGGATCCCAAAAATGGCTACTCAGATCCCAAGTCACTGGCAAGGCACCATTTTGGGAATTTGAAGCACCGATGA

Protein Analysis

131

Amino Acids

14.52

Weight (kDa)

5.33

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG6_C PF20653 1 - 123 5.2e-18 Conserved Oligomeric Golgi complex subunit 6, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31780
fragaria_vesca FvH4_2g37280 FvH4_2g37280
malus_domestica MD13G1243800.v1.1 MD13G1243900.v1.1 MD13G1244000.v1.1
prunus_persica Prupe.1G077200_v2.0.a1
pyrus_communis pycom13g21520 pycom16g21010
rosa_chinensis RchiOBHm_Chr6g0304421
rosa_laevigata RLG00000010980
rosa_multiflora Rmu_ssc0000218.1_g000049
rosa_roxburghii Rroxscaffold_7G00163750
rosa_rugosa Rorug06G0331400
rosa_samantha Rh6AG444300 Rh6BG458100 Rh6CG457100 Rh6DG443800
rosa_wichuraiana Rw6G038570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 363
AccII CGCG 1 cut(s) 93
AclWI GGATC 4 cut(s) 43, 317, 330, 338
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 221, 376
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 175, 382
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 2 cut(s) 8, 260
AluI AGCT 2 cut(s) 8, 260
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 4 cut(s) 43, 317, 330, 338
AoxI GGCC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 221, 376
Asp700I GAANNNNTTC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
BciVI GTATCC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 226
BfuI GTATCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 240, 324, 365
BmsI GCATC 2 cut(s) 69, 222
BpmI CTGGAG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 118, 360
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 2 cut(s) 115, 354
BseNI ACTGG 2 cut(s) 118, 360
BseRI GAGGAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 48, 322, 343
Bsp68I TCGCGA 1 cut(s) 93
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 114, 353
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 240, 324, 365
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 4 cut(s) 43, 317, 330, 338
BspT107I GGYRCC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 118, 360
BssMI GATC 3 cut(s) 48, 322, 343
BstAPI GCANNNNNTGC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 101, 340
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 51, 325, 346
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 48, 322, 343
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 19
BstUI CGCG 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 322, 343
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 2 cut(s) 322, 343
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 353
BtuMI TCGCGA 1 cut(s) 93
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 21
CviAII CATG 1 cut(s) 16
DdeI CTNAG 2 cut(s) 101, 340
DpnI GATC 3 cut(s) 50, 324, 345
DpnII GATC 3 cut(s) 48, 322, 343
EaeI YGGCCR 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 276
FaeI CATG 1 cut(s) 19
FaiI YATR 6 cut(s) 17, 295, 297, 307, 309, 320
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 15
FauNDI CATATG 2 cut(s) 295, 307
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 287
Hin1II CATG 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 166, 256, 343
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 19, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 101, 340
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 3 cut(s) 48, 322, 343
LpnPI CCDG 5 cut(s) 99, 165, 221, 231, 341
LweI GCATC 2 cut(s) 69, 222
MaeIII GTNAC 1 cut(s) 351
MalI GATC 3 cut(s) 50, 324, 345
MboI GATC 3 cut(s) 48, 322, 343
MboII GAAGA 1 cut(s) 88
MflI RGATCY 2 cut(s) 322, 343
MluCI AATT 3 cut(s) 221, 315, 376
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 100, 166
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 54
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeI CATATG 2 cut(s) 295, 307
NdeII GATC 3 cut(s) 48, 322, 343
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 3 cut(s) 240, 324, 365
NmuCI GTSAC 1 cut(s) 351
NruI TCGCGA 1 cut(s) 93
NspI RCATGY 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 179
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 3 cut(s) 240, 324, 365
PsuI RGATCY 2 cut(s) 322, 343
RruI TCGCGA 1 cut(s) 93
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 3 cut(s) 48, 322, 343
SchI GAGTC 1 cut(s) 89
SetI ASST 3 cut(s) 10, 240, 262
SfaNI GCATC 2 cut(s) 69, 222
Sse9I AATT 3 cut(s) 221, 315, 376
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 221, 315, 376
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 2 cut(s) 51, 324
TspRI CASTG 1 cut(s) 360
XapI RAATTY 2 cut(s) 221, 376
XceI RCATGY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.