Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011878

Physical Location & Seq

Genomic Coordinates Reverse (-)

62664953 .. 62669405

Gene Structure 4453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGGACACGAAGCTGGCGCCGGGGCTCTCCCGGAAGTTGAAGAAGGTTCTGGACTGCCGCACCGACTCTCCCGACGTGCTCTCATCCCTCAACACACTCTCATCCTTCTATGCCGAAAATACCCCTCAGTCGCGGCGCAATCTCAGATCGAGCATCGAGAAGCGAGGCCTCTCCATCAACGTCGACTTCCTCGAGGCGTCGCGTGCGGCGCAGCAGGCCCTGGATCGCGTGGAGGACGAGGTCAATGCCTTGGCCAATTGCTGCGACAAGATCGCCAAGGCTCTCAACAGCTGCAGTGCCACCACCGGTGACATTATCACCACCACCGAGCGGCTCAAGCAGGAGCTTAACGTCACCACTCAACGGCAGCAGATCGTCTCCTGCTTCCTCCGCGATTACCAGCTCTCCAACCAAGAGATCAATGCTTTGAGGGAGGAAGAACTGAACGAGGACTTCTTCAAGGCGCTCTCTCACGTTCAGGAAATTCATGCTAATTGTAAACTGCTACTGAGGACTCATCACCAGCGTGCTGGTTTGGAGCTCATGGATATGATGGCTGTGTACCAAGAGGGAGCTTATGAACGCCTCTGCAGGTGGGTTCAGGCGGAATGTAGGCAGCTTGGTGACTCTGATAATCCTCAAGTTAGTGATCTTTTGAGAACTGCGGTTCGTTGCCTCAAGGAAAGGCCTGTGCTTTTTAAGTACTGTGCAGAAGAGGTAGCGAATATGAGGCATAATGCATTGTTCAGACGGTTTATCAGTGCTCTTACACGTGGAGGACCTGGAGGAGTGCCGCGACCTATTGAAGTTCATGCTCATGATCCATTACGATATGTTGGGGATATGCTCGGGTGGTTACATCAGGCCTTGGCATCTGAACGTGAACTTGTACTTGCACTACTTGATCCAGATTCTATTGCTGATAGTCCAACCACAAACCAAATGTCCAAGAGCCAAGAAAGTGATTCTCAGAAGACAGAGTCTGATATTACATTTGTTCTGGATAGAATATTTGAAGGAGTTTGCCGTCCATTTAAATTGAGAGTTGAACAAGTTTTGCAGTCTCAATCCAGTCTCATAATTTCATATAAACTAAGTAACACCCTGGAGTTTTACAGTTACACTATATCAGATTTGCTTGGGAGAGATACAGCTTTATCTAATACCCTGTGGACACTGAAAGATGCTGCTCAGAAAACTTTTTTTGATATTTTGAAAACCCGGGGGGAAAAGCTTTTGAGGTATCCTCCCCTTGTTGCTGTTGACCTTTCTCCACCCCCAGCTGTAAGAGAAGGAGTCTCTGTGCTGCTTGAATTGGTTGAGACCCATTACAGCATGATGCTTCAGAAAAAGCCTCCTTTCGATCCAGTCATATCTGCTTTACTCGATCCAATTATTCAGATATGTGAACAAGCAGCAGAGGCACACAAGTCCAAGGGAGTTGGCCATTCTTCAAGAAGAAGTAGAATGGGTTCTGATTCTGGTCAATTCAGTAAGTCCTCAGTTGATGCACTACTGTCCAGCAGTTCTGCCCCATCACCTCAGTCTAGTGAAACATCCTCCAAAATTTTCCTCATCAACTGCTTGTGTGCCATCCAACAACCATTGTTGGGACATGAGGTTGCAGCAGAGTATGTGAAGAGTCTTGGGGCAATGATAGATAGACACATACACGGTCTCGTAGAAAATGAAGTCGATGCGATCCTTAAAAGATGTGGCTTGTCAACCAAAATGTCTCACTTCCGAGACTCGGTCAACAAAGAGTCTGGCAATACTCCATTGGTAGAGATTGAGGACACTTCTCCAGCTGCTCTTTCTGAGAGTTTGAAGGCTTTCTTTGGGCTTGTTTTGGGAAGTGACAGCTCCCTGCCTGAATTTGAGCAGATGCAGGTTCCAAAGTTGCGTGCTGAAGCTTGCATCCAAGTGGCCAAAGCATTGGCAGAAACATATGACCTTACATACGAGGCAATTATGGATCCGAAGAATGGCTACTCAGATCCCAAGTCACTTGCAAGGCATCCTCCGGACCAGATAAGGACCATTTTAGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006891 GO:0008150 GO:0008152 GO:0012505 GO:0016192 GO:0017119 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0070085 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG6

Protein Analysis

684

Amino Acids

76.13

Weight (kDa)

5.89

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG6_N	PF06419	33 - 145	3.7e-30	Conserved oligomeric complex COG6, N-terminal
COG6_C	PF20653	175 - 682	9.8e-148	Conserved Oligomeric Golgi complex subunit 6, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31780
fragaria_vesca	FvH4_2g37280 FvH4_2g37280
malus_domestica	MD13G1243800.v1.1 MD13G1243900.v1.1 MD13G1244000.v1.1
prunus_persica	Prupe.1G077200_v2.0.a1
pyrus_communis	pycom13g21520 pycom16g21010
rosa_chinensis	RchiOBHm_Chr6g0304421
rosa_laevigata	RLG00000010980
rosa_multiflora	Rmu_ssc0000218.1_g000049
rosa_roxburghii	Rroxscaffold_7G00163750
rosa_rugosa	Rorug06G0331400
rosa_samantha	Rh6AG444300 Rh6BG458100 Rh6CG457100 Rh6DG443800
rosa_wichuraiana	Rw6G038570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	582
AbsI	CCTCGAGG	1 cut(s)	191
Acc36I	ACCTGC	2 cut(s)	582, 1879
AccB1I	GGYRCC	1 cut(s)	16
AccBSI	CCGCTC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	5 cut(s)	133, 202, 228, 393, 796
AccIII	TCCGGA	1 cut(s)	2023
AciI	CCGC	8 cut(s)	58, 133, 206, 331, 391, 605, 665, 794
AclWI	GGATC	9 cut(s)	231, 815, 899, 1358, 1382, 1696, 1970, 1983, 1991
AcoI	YGGCCR	3 cut(s)	252, 1444, 1926
AcsI	RAATTY	3 cut(s)	483, 1566, 1874
AcuI	CTGAAG	2 cut(s)	1328, 1929
AcvI	CACGTG	1 cut(s)	773
AcyI	GRCGYC	2 cut(s)	17, 197
AfaI	GTAC	3 cut(s)	563, 704, 891
AfiI	CCNNNNNNNGG	5 cut(s)	330, 363, 1610, 1750, 1985
AflIII	ACRYGT	1 cut(s)	770
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	9 cut(s)	40, 460, 806, 1016, 1049, 1216, 1313, 1455, 1828
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	3 cut(s)	219, 781, 1104
AleI	CACNNNNGTG	1 cut(s)	525
Alw21I	GWGCWC	3 cut(s)	81, 543, 766
Alw26I	GTCTC	8 cut(s)	382, 1068, 1079, 1303, 1316, 1682, 1740, 1740
AlwI	GGATC	9 cut(s)	231, 815, 899, 1358, 1382, 1696, 1970, 1983, 1991
AlwNI	CAGNNNCTG	2 cut(s)	220, 983
Ama87I	CYCGRG	3 cut(s)	191, 848, 1221
Aor13HI	TCCGGA	1 cut(s)	2023
AoxI	GGCC	7 cut(s)	166, 216, 252, 686, 864, 1444, 1926
ApoI	RAATTY	3 cut(s)	483, 1566, 1874
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AsiGI	ACCGGT	1 cut(s)	305
Asp700I	GAANNNNTTC	2 cut(s)	1471, 1832
AspLEI	GCGC	4 cut(s)	19, 138, 211, 466
AspS9I	GGNCC	4 cut(s)	217, 779, 2026, 2037
AsuC2I	CCSGG	4 cut(s)	21, 31, 1222, 1223
AsuHPI	GGTGA	6 cut(s)	310, 320, 346, 512, 635, 1530
AvaI	CYCGRG	3 cut(s)	191, 848, 1221
AvaII	GGWCC	3 cut(s)	779, 2026, 2037
BalI	TGGCCA	3 cut(s)	254, 1446, 1928
BamHI	GGATCC	1 cut(s)	1975
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	27, 543
BarI	GAAGNNNNNNTAC	2 cut(s)	1973, 2005
BbrPI	CACGTG	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	3 cut(s)	81, 543, 766
BccI	CCATC	4 cut(s)	182, 547, 1543, 1601
BceAI	ACGGC	2 cut(s)	380, 1011
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	3 cut(s)	221, 783, 1106
BciVI	GTATCC	1 cut(s)	1254
BcnI	CCSGG	4 cut(s)	21, 31, 1222, 1223
BcoDI	GTCTC	8 cut(s)	382, 1068, 1079, 1303, 1316, 1682, 1740, 1740
BfaI	CTAG	1 cut(s)	1548
BfmI	CTRYAG	2 cut(s)	292, 589
BfoI	RGCGCY	2 cut(s)	20, 467
BfuAI	ACCTGC	2 cut(s)	582, 1879
BfuI	GTATCC	1 cut(s)	1254
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	7 cut(s)	21, 31, 221, 783, 1106, 1222, 1223
Bme18I	GGWCC	3 cut(s)	779, 2026, 2037
BmeT110I	CYCGRG	3 cut(s)	191, 848, 1221
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	4 cut(s)	217, 779, 2026, 2037
BmiI	GGNNCC	3 cut(s)	18, 1893, 1977
BmrFI	CCNGG	7 cut(s)	21, 31, 221, 783, 1106, 1222, 1223
BmsI	GCATC	9 cut(s)	162, 881, 1174, 1329, 1498, 1687, 1875, 1926, 2026
BpiI	GAAGAC	1 cut(s)	980
BplI	GAGNNNNNCTC	2 cut(s)	1231, 1263
BpmI	CTGGAG	3 cut(s)	804, 1127, 1788
BpuEI	CTTGAG	3 cut(s)	320, 624, 662
BpuMI	CCSGG	4 cut(s)	21, 31, 1222, 1223
BsaAI	YACGTR	1 cut(s)	773
BsaHI	GRCGYC	2 cut(s)	17, 197
BsaI	GGTCTC	2 cut(s)	1316, 1682
BsaJI	CCNNGG	9 cut(s)	20, 219, 249, 276, 867, 1104, 1221, 1222, 1434
BsaWI	WCCGGW	2 cut(s)	305, 2023
BsaXI	ACNNNNNCTCC	6 cut(s)	52, 82, 389, 419, 1287, 1317
Bsc4I	CCNNNNNNNGG	5 cut(s)	330, 363, 1610, 1750, 1985
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	1071, 1367
Bse3DI	GCAATG	1 cut(s)	1659
BseAI	TCCGGA	1 cut(s)	2023
BseBI	CCWGG	3 cut(s)	221, 783, 1106
BseDI	CCNNGG	9 cut(s)	20, 219, 249, 276, 867, 1104, 1221, 1222, 1434
BseGI	GGATG	6 cut(s)	83, 101, 1556, 1593, 1917, 2017
BseLI	CCNNNNNNNGG	5 cut(s)	330, 363, 1610, 1750, 1985
BseMI	GCAATG	1 cut(s)	1659
BseMII	CTCAG	9 cut(s)	140, 157, 500, 983, 1205, 1515, 1556, 1809, 2007
BseNI	ACTGG	2 cut(s)	1071, 1367
BseRI	GAGGAG	1 cut(s)	801
BseYI	CCCAGC	1 cut(s)	1279
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	5 cut(s)	133, 202, 228, 393, 796
BshFI	GGCC	7 cut(s)	168, 218, 254, 688, 866, 1446, 1928
BshNI	GGYRCC	1 cut(s)	16
BshTI	ACCGGT	1 cut(s)	305
BsiHKAI	GWGCWC	3 cut(s)	81, 543, 766
BsiHKCI	CYCGRG	3 cut(s)	191, 848, 1221
BsiSI	CCGG	5 cut(s)	20, 31, 306, 1222, 2024
BslFI	GGGAC	1 cut(s)	1626
BslI	CCNNNNNNNGG	5 cut(s)	330, 363, 1610, 1750, 1985
BsmAI	GTCTC	8 cut(s)	382, 1068, 1079, 1303, 1316, 1682, 1740, 1740
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	1626
BsnI	GGCC	7 cut(s)	168, 218, 254, 688, 866, 1446, 1928
Bso31I	GGTCTC	2 cut(s)	1316, 1682
BsoBI	CYCGRG	3 cut(s)	191, 848, 1221
Bsp1286I	GDGCHC	4 cut(s)	27, 81, 543, 766
Bsp13I	TCCGGA	1 cut(s)	2023
BspACI	CCGC	8 cut(s)	58, 133, 206, 331, 391, 605, 665, 794
BspANI	GGCC	7 cut(s)	168, 218, 254, 688, 866, 1446, 1928
BspCNI	CTCAG	9 cut(s)	139, 156, 501, 982, 1204, 1514, 1555, 1810, 2006
BspEI	TCCGGA	1 cut(s)	2023
BspFNI	CGCG	5 cut(s)	133, 202, 228, 393, 796
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	3 cut(s)	18, 1893, 1977
BspMAI	CTGCAG	2 cut(s)	296, 593
BspMI	ACCTGC	2 cut(s)	582, 1879
BspPI	GGATC	9 cut(s)	231, 815, 899, 1358, 1382, 1696, 1970, 1983, 1991
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	2 cut(s)	1316, 1682
BsrBI	CCGCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	1659
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	1071, 1367
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	9 cut(s)	20, 219, 249, 276, 867, 1104, 1221, 1222, 1434
BssNI	GRCGYC	2 cut(s)	17, 197
BssT1I	CCWWGG	4 cut(s)	249, 276, 867, 1434
Bst2UI	CCWGG	3 cut(s)	221, 783, 1106
Bst4CI	ACNGT	5 cut(s)	707, 753, 1118, 1518, 1676
Bst6I	CTCTTC	2 cut(s)	708, 1634
BstACI	GRCGYC	2 cut(s)	17, 197
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	6 cut(s)	15, 204, 216, 528, 1905, 1915
BstF5I	GGATG	6 cut(s)	83, 101, 1556, 1593, 1917, 2017
BstFNI	CGCG	5 cut(s)	133, 202, 228, 393, 796
BstH2I	RGCGCY	2 cut(s)	20, 467
BstHHI	GCGC	4 cut(s)	19, 138, 211, 466
BstMAI	GTCTC	8 cut(s)	382, 1068, 1079, 1303, 1316, 1682, 1740, 1740
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 208, 215, 337, 390, 1421
BstNI	CCWGG	3 cut(s)	221, 783, 1106
BstSCI	CCNGG	7 cut(s)	19, 29, 219, 781, 1104, 1220, 1221
BstSFI	CTRYAG	2 cut(s)	292, 589
BstUI	CGCG	5 cut(s)	133, 202, 228, 393, 796
BstV2I	GAAGAC	1 cut(s)	980
BstX2I	RGATCY	2 cut(s)	1975, 1996
BstXI	CCANNNNNNTGG	2 cut(s)	530, 1936
BstYI	RGATCY	2 cut(s)	1975, 1996
BsuI	GTATCC	1 cut(s)	1254
BsuRI	GGCC	7 cut(s)	168, 218, 254, 688, 866, 1446, 1928
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	6 cut(s)	83, 101, 1556, 1593, 1917, 2017
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	301, 766, 1175
BveI	ACCTGC	2 cut(s)	582, 1879
Cac8I	GCNNGC	6 cut(s)	15, 204, 216, 528, 1905, 1915
CaiI	CAGNNNCTG	2 cut(s)	220, 983
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	4 cut(s)	19, 138, 211, 466
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	4 cut(s)	217, 779, 2026, 2037
Cfr9I	CCCGGG	1 cut(s)	1221
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	3 cut(s)	562, 703, 890
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	6 cut(s)	488, 544, 812, 818, 1336, 1616
CviQI	GTAC	3 cut(s)	562, 703, 890
DinI	GGCGCC	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	1036
EaeI	YGGCCR	3 cut(s)	252, 1444, 1926
Eam1104I	CTCTTC	2 cut(s)	708, 1634
EarI	CTCTTC	2 cut(s)	708, 1634
EciI	GGCGGA	1 cut(s)	620
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	4 cut(s)	249, 276, 867, 1434
Eco147I	AGGCCT	3 cut(s)	168, 688, 866
Eco24I	GRGCYC	2 cut(s)	27, 543
Eco31I	GGTCTC	2 cut(s)	1316, 1682
Eco47I	GGWCC	3 cut(s)	779, 2026, 2037
Eco53kI	GAGCTC	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	1328, 1929
Eco72I	CACGTG	1 cut(s)	773
Eco88I	CYCGRG	3 cut(s)	191, 848, 1221
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	217, 779
EcoRII	CCWGG	3 cut(s)	219, 781, 1104
EcoT14I	CCWWGG	4 cut(s)	249, 276, 867, 1434
EcoT22I	ATGCAT	1 cut(s)	742
EcoT38I	GRGCYC	2 cut(s)	27, 543
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	4 cut(s)	249, 276, 867, 1434
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	6 cut(s)	491, 547, 815, 821, 1339, 1619
FalI	AAGNNNNNCTT	2 cut(s)	1820, 1852
FaqI	GGGAC	1 cut(s)	1626
FatI	CATG	6 cut(s)	487, 543, 811, 817, 1335, 1615
FauNDI	CATATG	1 cut(s)	1948
FblI	GTMKAC	1 cut(s)	183
FokI	GGATG	6 cut(s)	70, 88, 1543, 1580, 1904, 2004
FriOI	GRGCYC	2 cut(s)	27, 543
FspBI	CTAG	1 cut(s)	1548
GlaI	GCGC	4 cut(s)	18, 137, 210, 465
GsaI	CCCAGC	1 cut(s)	1283
GsuI	CTGGAG	3 cut(s)	804, 1127, 1788
HaeII	RGCGCY	2 cut(s)	20, 467
HaeIII	GGCC	7 cut(s)	168, 218, 254, 688, 866, 1446, 1928
HapII	CCGG	5 cut(s)	20, 31, 306, 1222, 2024
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	4 cut(s)	19, 138, 211, 466
Hin1I	GRCGYC	2 cut(s)	17, 197
Hin1II	CATG	6 cut(s)	491, 547, 815, 821, 1339, 1619
Hin6I	GCGC	4 cut(s)	17, 136, 209, 464
HinP1I	GCGC	4 cut(s)	17, 136, 209, 464
HincII	GTYRAC	4 cut(s)	184, 1264, 1725, 1756
HindII	GTYRAC	4 cut(s)	184, 1264, 1725, 1756
HindIII	AAGCTT	2 cut(s)	1232, 1911
HpaII	CCGG	5 cut(s)	20, 31, 306, 1222, 2024
HphI	GGTGA	6 cut(s)	310, 320, 346, 512, 635, 1530
Hpy166II	GTNNAC	9 cut(s)	184, 500, 562, 884, 1173, 1264, 1409, 1725, 1756
Hpy188III	TCNNGA	9 cut(s)	50, 71, 157, 479, 818, 908, 1001, 1455, 2024
Hpy8I	GTNNAC	9 cut(s)	184, 500, 562, 884, 1173, 1264, 1409, 1725, 1756
Hpy99I	CGWCG	3 cut(s)	77, 185, 202
HpyAV	CCTTC	5 cut(s)	37, 115, 1010, 1286, 1822
HpyCH4III	ACNGT	5 cut(s)	707, 753, 1118, 1518, 1676
HpyCH4IV	ACGT	6 cut(s)	75, 180, 351, 474, 772, 880
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 208, 215, 337, 390, 1421
HpySE526I	ACGT	6 cut(s)	75, 180, 351, 474, 772, 880
Hsp92I	GRCGYC	2 cut(s)	17, 197
Hsp92II	CATG	6 cut(s)	491, 547, 815, 821, 1339, 1619
HspAI	GCGC	4 cut(s)	17, 136, 209, 464
KasI	GGCGCC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	2023
LmnI	GCTCC	4 cut(s)	343, 538, 572, 1868
LweI	GCATC	9 cut(s)	162, 881, 1174, 1329, 1498, 1687, 1875, 1926, 2026
MaeI	CTAG	1 cut(s)	1548
MaeII	ACGT	6 cut(s)	75, 180, 351, 474, 772, 880
MaeIII	GTNAC	8 cut(s)	308, 352, 623, 855, 1097, 1118, 1856, 2004
MbiI	CCGCTC	1 cut(s)	331
MboII	GAAGA	9 cut(s)	52, 448, 449, 725, 985, 1443, 1470, 1651, 1993
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	2 cut(s)	1975, 1996
MhlI	GDGCHC	4 cut(s)	27, 81, 543, 766
MlsI	TGGCCA	3 cut(s)	254, 1446, 1928
MluNI	TGGCCA	3 cut(s)	254, 1446, 1928
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	8 cut(s)	59, 508, 620, 989, 1305, 1651, 1742, 1772
MmeI	TCCRAC	3 cut(s)	432, 953, 1621
Mox20I	TGGCCA	3 cut(s)	254, 1446, 1928
Mph1103I	ATGCAT	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	2023
MroXI	GAANNNNTTC	2 cut(s)	1471, 1832
MscI	TGGCCA	3 cut(s)	254, 1446, 1928
MseI	TTAA	4 cut(s)	348, 699, 1035, 1707
MslI	CAYNNNNRTG	4 cut(s)	525, 548, 816, 1922
Msp20I	TGGCCA	3 cut(s)	254, 1446, 1928
MspA1I	CMGCKG	3 cut(s)	291, 1283, 1808
MspI	CCGG	5 cut(s)	20, 31, 306, 1222, 2024
MspR9I	CCNGG	7 cut(s)	21, 31, 221, 783, 1106, 1222, 1223
MunI	CAATTG	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	221, 783, 1106
MvnI	CGCG	5 cut(s)	133, 202, 228, 393, 796
MwoI	GCNNNNNNNGC	6 cut(s)	203, 208, 215, 337, 390, 1421
NarI	GGCGCC	1 cut(s)	17
NciI	CCSGG	4 cut(s)	21, 31, 1222, 1223
NdeI	CATATG	1 cut(s)	1948
NlaIII	CATG	6 cut(s)	491, 547, 815, 821, 1339, 1619
NlaIV	GGNNCC	3 cut(s)	18, 1893, 1977
NmuCI	GTSAC	5 cut(s)	308, 352, 623, 1856, 2004
NsiI	ATGCAT	1 cut(s)	742
OliI	CACNNNNGTG	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	817
PaqCI	CACCTGC	1 cut(s)	582
PceI	AGGCCT	3 cut(s)	168, 688, 866
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	1471, 1832
PfeI	GAWTC	3 cut(s)	911, 965, 1478
PflFI	GACNNNGTC	3 cut(s)	239, 979, 1751
PfoI	TCCNGGA	1 cut(s)	29
PinAI	ACCGGT	1 cut(s)	305
PleI	GAGTC	8 cut(s)	59, 508, 620, 988, 1304, 1650, 1742, 1771
PluTI	GGCGCC	1 cut(s)	20
PmaCI	CACGTG	1 cut(s)	773
PmlI	CACGTG	1 cut(s)	773
PpsI	GAGTC	8 cut(s)	59, 508, 620, 988, 1304, 1650, 1742, 1771
Ppu21I	YACGTR	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	3 cut(s)	219, 781, 1104
PspCI	CACGTG	1 cut(s)	773
PspFI	CCCAGC	1 cut(s)	1279
PspGI	CCWGG	3 cut(s)	219, 781, 1104
PspN4I	GGNNCC	3 cut(s)	18, 1893, 1977
PspPI	GGNCC	4 cut(s)	217, 779, 2026, 2037
PspPPI	RGGWCCY	1 cut(s)	779
PspXI	VCTCGAGB	1 cut(s)	191
PsrI	GAACNNNNNNTAC	2 cut(s)	1456, 1488
PstI	CTGCAG	2 cut(s)	296, 593
PstNI	CAGNNNCTG	2 cut(s)	220, 983
PsuI	RGATCY	2 cut(s)	1975, 1996
PsyI	GACNNNGTC	3 cut(s)	239, 979, 1751
PvuII	CAGCTG	3 cut(s)	291, 1283, 1808
RsaI	GTAC	3 cut(s)	563, 704, 891
RsaNI	GTAC	3 cut(s)	562, 703, 890
RseI	CAYNNNNRTG	4 cut(s)	525, 548, 816, 1922
SacI	GAGCTC	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	348, 699, 1035, 1707
Sau96I	GGNCC	4 cut(s)	217, 779, 2026, 2037
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	8 cut(s)	59, 508, 620, 989, 1305, 1651, 1742, 1772
ScrFI	CCNGG	7 cut(s)	21, 31, 221, 783, 1106, 1222, 1223
SduI	GDGCHC	4 cut(s)	27, 81, 543, 766
SfaNI	GCATC	9 cut(s)	162, 881, 1174, 1329, 1498, 1687, 1875, 1926, 2026
SfcI	CTRYAG	2 cut(s)	292, 589
SfoI	GGCGCC	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	191
SgrAI	CRCCGGYG	1 cut(s)	305
SinI	GGWCC	3 cut(s)	779, 2026, 2037
SlaI	CTCGAG	1 cut(s)	191
SmaI	CCCGGG	1 cut(s)	1223
SmiI	ATTTAAAT	1 cut(s)	1036
SmiMI	CAYNNNNRTG	4 cut(s)	525, 548, 816, 1922
SmlI	CTYRAG	4 cut(s)	191, 335, 639, 677
SmoI	CTYRAG	4 cut(s)	191, 335, 639, 677
SseBI	AGGCCT	3 cut(s)	168, 688, 866
SsiI	CCGC	8 cut(s)	58, 133, 206, 331, 391, 605, 665, 794
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	1011
SspMI	CTAG	1 cut(s)	1548
SstI	GAGCTC	1 cut(s)	543
StuI	AGGCCT	3 cut(s)	168, 688, 866
StyD4I	CCNGG	7 cut(s)	19, 29, 219, 781, 1104, 1220, 1221
StyI	CCWWGG	4 cut(s)	249, 276, 867, 1434
SwaI	ATTTAAAT	1 cut(s)	1036
TaaI	ACNGT	5 cut(s)	707, 753, 1118, 1518, 1676
TaiI	ACGT	6 cut(s)	78, 183, 354, 477, 775, 883
TaqI	TCGA	7 cut(s)	149, 156, 183, 192, 1362, 1386, 1695
TaqII	GACCGA	1 cut(s)	1741
TatI	WGTACW	2 cut(s)	702, 889
TauI	GCSGC	5 cut(s)	60, 136, 209, 334, 796
TfiI	GAWTC	3 cut(s)	911, 965, 1478
Tru1I	TTAA	4 cut(s)	348, 699, 1035, 1707
Tru9I	TTAA	4 cut(s)	348, 699, 1035, 1707
TscAI	CASTG	3 cut(s)	301, 766, 1182
TseFI	GTSAC	5 cut(s)	308, 352, 623, 1856, 2004
Tsp45I	GTSAC	5 cut(s)	308, 352, 623, 1856, 2004
TspDTI	ATGAA	5 cut(s)	476, 594, 800, 1074, 1704
TspMI	CCCGGG	1 cut(s)	1221
TspRI	CASTG	3 cut(s)	301, 766, 1182
Tth111I	GACNNNGTC	3 cut(s)	239, 979, 1751
VpaK11BI	GGWCC	3 cut(s)	779, 2026, 2037
XapI	RAATTY	3 cut(s)	483, 1566, 1874
XhoI	CTCGAG	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	1221
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	2 cut(s)	1471, 1832
XspI	CTAG	1 cut(s)	1548
ZrmI	AGTACT	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.