MD14G1115400.v1.1

Holliday junction DNA helicase ruvB N-terminus

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
18770026 .. 18773902
3877 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1115400.v1.1.491

Sequence Viewer

Length: 1887 bp
ATGCTTCGTAGGAATGCTTCAGCTTCAGCTAATATTAGTAACCTTGCTTCACAGAGCACTCCTGCAAATTCAGATGAGTTTAAGCGCGCAAGCAGCTGGTCGTTTGATGAAAAGCTTCTTATACAGTCCCTGTACAGGGTTTTGGTTTTCGTCTCAAGTACTAGTCCCATTGTGCTGTATCTTAGGGACGTTGACAAGCTCTTATCTAGATCGCAAACGATATATAACTTGTTCCAGAAAATGTTGAAGAAATTATCTGGAGCCGTGTTGATCCTTGGTTCACGAATTGTGGATCTCAGTGGTGACAACAGAGAGGCGGAGGAGAGGCTTACTGCTCTTTTCCCTTACAACATCGAGATCAGGCCCCCTGAAAATGAATCCCTTCTTGTCAGCTGGAAGACTCAACTGGAGAAGGATATGAGAATGATTCAGGTTCAGGATAACAAAAACCACATCATGGAAGTACTTTCGGCTAATGATCTTGATTGTGATGATCTTGGTTCGATCTGTATCGCAGACACAATTGATCTCAGTAACTGCATAGAAGAAATTGTTGTATCAGCAGTTTCTTATCATTTGATGAATAACAAAGATCCTGAATACAGAAATGGGAAACTCATCATTTCTTCCAATAGTTTGTCCCATGGATTAAGCATATTCCAAGAGGGAATATCCAGTGGGAAAGATACAATGAAGCTGGAAGCGAAGGCTGAAGTGCCTAAGGAAGGAGGAACTGAAGTGTCTGTCGGTGTGATGACAGAAACAAAAACCAAAAGCACTGCTACTGCTGCAGAGACAACAGCTGCAGCAGCAAAAATGGAAGCTGACAATTCAATTCCAGTATCAAGAGCTTCTGCAGAAGTCGATGATGAATTTGAGAAGCGCATAAAACCAGAGGTCATACCAGCAAATGAGATTGTCGTAACATTTGCTGATATTGGTGCCATGGATGAGATAAAAGAATCCCTTCAGGAATTGGTAATGCTTCCACTTCATAGACCAGACCTTTTCAGCGGAGGCCTACTAAAGCCTTGTAGAGGTATACTGCTATTTGGTCCCCCCGGAAGTGGGAAGACCATGCTGGCGAAAGCCATTGCTAGGGAGGCTGGAGCAAGCTTCATTAATGTATCCATGTCTACCATTACCTCCAAGTGGTTTGGCGAAGATGAAAAAAATGTCCGAGCTTTGTTCACTCTCGCAGCCAAAGTCTCTCCAACCATTATATTTGTAGACGAGGTTGATAGCATGCTTGGACAGCGAACAAGAGTTGGAGAGCATGAAGCCATGAGAAAAATAAAAAATGAGTTTATGATTCATTGGGATGGGCTCTTGAGTAGTCAAGGAGATCGAATCCTTGTTCTCGCTGCAACCAACAGACCATTTGACCTTGATGAAGCAATCATCAGGCGTTTTGAACGAAGAATTTTGGTGGGGCTACCGACTGTGGAGAACAGAGAAATGATTTTGAGAACTCTGTTGTTGAAAGAGAAGGTGGAAGCCCGACTAGACTTCATGGAGCTTGCAACTATGACTGAAGGGTTTAGTGGAAGTGATCTTAAGAACTTGTGTACAACAGCTGCCTATCGGCCAGTTAGGGAGTTAATAAAGGCGGAGAGCAAAAAGGATTTGGATAAAAAGAAGAGAGCTGCACAAGATGCTTTGGGAGAACGGAATCCAGAAGCTGTCCCAGAAACAGAAGAAGAACCTAAAGAGGAAAGAGTCATCACCCTCAGGCCCTTAAACATGGAAGACTTCAAGCAGGCGAAGAATCAGGTTGCAGCTAGCTTTGCCTCTGAGGGATCCATGATGAACGAATTGAAGCAGTGGAACGATCTCTATGGGGAAGGGGGATCGCGAAAGAAAGAGAAGCTAACTTACTTTCTATGA

Protein Analysis

629

Amino Acids

69.97

Weight (kDa)

5.36

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7751 PF24933 161 - 221 3.5e-34 Domain of unknown function (DUF7751)
AAA PF00004 348 - 478 2.6e-38 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 502 - 544 7.5e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 941
AccB7I CCANNNNNTGG 1 cut(s) 457
AccI GTMKAC 3 cut(s) 1042, 1136, 1230
AccII CGCG 2 cut(s) 87, 1855
AciI CCGC 3 cut(s) 317, 1014, 1610
AclWI GGATC 6 cut(s) 265, 300, 587, 1794, 1807, 1858
AcoI YGGCCR 1 cut(s) 1586
AcsI RAATTY 3 cut(s) 67, 872, 1422
AcuI CTGAAG 5 cut(s) 9, 732, 756, 953, 1554
AfaI GTAC 4 cut(s) 134, 160, 465, 1570
AfiI CCNNNNNNNGG 9 cut(s) 135, 136, 457, 725, 1037, 1067, 1068, 1098, 1152
AflII CTTAAG 1 cut(s) 1556
AgsI TTSAA 6 cut(s) 247, 834, 1415, 1483, 1756, 1819
AhlI ACTAGT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 3 cut(s) 157, 788, 1213
AlwI GGATC 6 cut(s) 265, 300, 587, 1794, 1807, 1858
AlwNI CAGNNNCTG 3 cut(s) 130, 537, 1682
AoxI GGCC 4 cut(s) 362, 1018, 1586, 1733
ApoI RAATTY 3 cut(s) 67, 872, 1422
AseI ATTAAT 1 cut(s) 1122
Asp700I GAANNNNTTC 3 cut(s) 114, 381, 966
AspLEI GCGC 3 cut(s) 87, 89, 885
AspS9I GGNCC 3 cut(s) 363, 1055, 1734
AsuC2I CCSGG 1 cut(s) 1062
AsuHPI GGTGA 2 cut(s) 314, 1717
AsuNHI GCTAGC 1 cut(s) 1781
AvaII GGWCC 1 cut(s) 1055
AxyI CCTNAGG 2 cut(s) 720, 1730
BamHI GGATCC 1 cut(s) 1799
BanI GGYRCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 1329
BarI GAAGNNNNNNTAC 4 cut(s) 31, 33, 63, 1859
BbsI GAAGAC 3 cut(s) 404, 1079, 1755
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 1 cut(s) 1316
BceAI ACGGC 1 cut(s) 248
BciVI GTATCC 1 cut(s) 1138
BcnI CCSGG 1 cut(s) 1062
BcoDI GTCTC 3 cut(s) 157, 788, 1213
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 5 cut(s) 162, 207, 1098, 1505, 1782
BfmI CTRYAG 3 cut(s) 789, 804, 855
BfrI CTTAAG 1 cut(s) 1556
BfuI GTATCC 1 cut(s) 1138
BmcAI AGTACT 2 cut(s) 160, 465
Bme1390I CCNGG 1 cut(s) 1062
Bme18I GGWCC 1 cut(s) 1055
BmgT120I GGNCC 3 cut(s) 363, 1055, 1734
BmiI GGNNCC 5 cut(s) 262, 365, 943, 1057, 1801
BmrFI CCNGG 1 cut(s) 1062
BmsI GCATC 1 cut(s) 1645
BmtI GCTAGC 1 cut(s) 1785
BpiI GAAGAC 3 cut(s) 404, 1079, 1755
BpmI CTGGAG 3 cut(s) 279, 428, 1128
BpuEI CTTGAG 2 cut(s) 139, 1351
BpuMI CCSGG 1 cut(s) 1062
BsaBI GATNNNNATC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 274, 643, 945, 1060
Bsc4I CCNNNNNNNGG 9 cut(s) 135, 136, 457, 725, 1037, 1067, 1068, 1098, 1152
Bse1I ACTGG 4 cut(s) 411, 675, 839, 1589
Bse21I CCTNAGG 2 cut(s) 720, 1730
Bse3DI GCAATG 1 cut(s) 1092
Bse8I GATNNNNATC 1 cut(s) 509
BseDI CCNNGG 4 cut(s) 274, 643, 945, 1060
BseGI GGATG 2 cut(s) 955, 1327
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 9 cut(s) 135, 136, 457, 725, 1037, 1067, 1068, 1098, 1152
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 4 cut(s) 310, 544, 1744, 1785
BseNI ACTGG 4 cut(s) 411, 675, 839, 1589
BsePI GCGCGC 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 1632
Bsh1236I CGCG 2 cut(s) 87, 1855
BshFI GGCC 4 cut(s) 364, 1020, 1588, 1735
BshNI GGYRCC 1 cut(s) 941
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 1062
BslFI GGGAC 6 cut(s) 112, 150, 200, 625, 1041, 1670
BslI CCNNNNNNNGG 9 cut(s) 135, 136, 457, 725, 1037, 1067, 1068, 1098, 1152
BsmAI GTCTC 3 cut(s) 157, 788, 1213
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 6 cut(s) 112, 150, 200, 625, 1041, 1670
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 4 cut(s) 364, 1020, 1588, 1735
Bsp1286I GDGCHC 2 cut(s) 59, 1329
Bsp1407I TGTACA 2 cut(s) 132, 1568
Bsp19I CCATGG 2 cut(s) 643, 945
Bsp68I TCGCGA 1 cut(s) 1855
BspACI CCGC 3 cut(s) 317, 1014, 1610
BspANI GGCC 4 cut(s) 364, 1020, 1588, 1735
BspCNI CTCAG 4 cut(s) 309, 543, 1743, 1786
BspFNI CGCG 2 cut(s) 87, 1855
BspLI GGNNCC 5 cut(s) 262, 365, 943, 1057, 1801
BspMAI CTGCAG 3 cut(s) 793, 808, 859
BspOI GCTAGC 1 cut(s) 1785
BspPI GGATC 6 cut(s) 265, 300, 587, 1794, 1807, 1858
BspT107I GGYRCC 1 cut(s) 941
BspTI CTTAAG 1 cut(s) 1556
BsrDI GCAATG 1 cut(s) 1092
BsrGI TGTACA 2 cut(s) 132, 1568
BsrI ACTGG 4 cut(s) 411, 675, 839, 1589
BssECI CCNNGG 4 cut(s) 274, 643, 945, 1060
BssHII GCGCGC 1 cut(s) 85
BssNAI GTATAC 1 cut(s) 1043
BssT1I CCWWGG 3 cut(s) 274, 643, 945
Bst1107I GTATAC 1 cut(s) 1043
Bst4CI ACNGT 2 cut(s) 126, 1444
Bst6I CTCTTC 1 cut(s) 1634
BstAFI CTTAAG 1 cut(s) 1556
BstAPI GCANNNNNTGC 1 cut(s) 1655
BstAUI TGTACA 2 cut(s) 132, 1568
BstC8I GCNNGC 8 cut(s) 87, 91, 1083, 1114, 1247, 1521, 1761, 1783
BstDEI CTNAG 6 cut(s) 182, 296, 530, 720, 1730, 1794
BstDSI CCRYGG 2 cut(s) 643, 945
BstENI CCTNNNNNAGG 2 cut(s) 723, 1035
BstF5I GGATG 2 cut(s) 955, 1327
BstFNI CGCG 2 cut(s) 87, 1855
BstHHI GCGC 3 cut(s) 87, 89, 885
BstMAI GTCTC 3 cut(s) 157, 788, 1213
BstMWI GCNNNNNNNGC 7 cut(s) 93, 788, 809, 1103, 1255, 1655, 1787
BstNSI RCATGY 1 cut(s) 1249
BstSCI CCNGG 1 cut(s) 1060
BstSFI CTRYAG 3 cut(s) 789, 804, 855
BstUI CGCG 2 cut(s) 87, 1855
BstV2I GAAGAC 3 cut(s) 404, 1079, 1755
BstX2I RGATCY 3 cut(s) 292, 592, 1799
BstYI RGATCY 3 cut(s) 292, 592, 1799
BstZ17I GTATAC 1 cut(s) 1043
Bsu36I CCTNAGG 2 cut(s) 720, 1730
BsuI GTATCC 1 cut(s) 1138
BsuRI GGCC 4 cut(s) 364, 1020, 1588, 1735
BtgI CCRYGG 2 cut(s) 643, 945
BtsCI GGATG 2 cut(s) 955, 1327
BtsI GCAGTG 2 cut(s) 777, 1829
BtsIMutI CAGTG 4 cut(s) 304, 682, 777, 1829
BtuMI TCGCGA 1 cut(s) 1855
Cac8I GCNNGC 8 cut(s) 87, 91, 1083, 1114, 1247, 1521, 1761, 1783
CaiI CAGNNNCTG 3 cut(s) 130, 537, 1682
CfoI GCGC 3 cut(s) 87, 89, 885
Cfr13I GGNCC 3 cut(s) 363, 1055, 1734
Csp6I GTAC 4 cut(s) 133, 159, 464, 1569
CviQI GTAC 4 cut(s) 133, 159, 464, 1569
DdeI CTNAG 6 cut(s) 182, 296, 530, 720, 1730, 1794
EaeI YGGCCR 1 cut(s) 1586
Eam1104I CTCTTC 1 cut(s) 1634
EarI CTCTTC 1 cut(s) 1634
EciI GGCGGA 2 cut(s) 332, 1625
Eco130I CCWWGG 3 cut(s) 274, 643, 945
Eco147I AGGCCT 1 cut(s) 1020
Eco24I GRGCYC 1 cut(s) 1329
Eco47I GGWCC 1 cut(s) 1055
Eco57I CTGAAG 5 cut(s) 9, 732, 756, 953, 1554
Eco81I CCTNAGG 2 cut(s) 720, 1730
EcoNI CCTNNNNNAGG 2 cut(s) 723, 1035
EcoO109I RGGNCCY 2 cut(s) 363, 1734
EcoT14I CCWWGG 3 cut(s) 274, 643, 945
EcoT38I GRGCYC 1 cut(s) 1329
ErhI CCWWGG 3 cut(s) 274, 643, 945
Esp3I CGTCTC 1 cut(s) 157
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 6 cut(s) 112, 150, 200, 625, 1041, 1670
FblI GTMKAC 3 cut(s) 1042, 1136, 1230
FokI GGATG 2 cut(s) 962, 1334
FriOI GRGCYC 1 cut(s) 1329
FspBI CTAG 5 cut(s) 162, 207, 1098, 1505, 1782
GlaI GCGC 3 cut(s) 86, 88, 884
GsuI CTGGAG 3 cut(s) 279, 428, 1128
HaeIII GGCC 4 cut(s) 364, 1020, 1588, 1735
HapII CCGG 1 cut(s) 1062
HhaI GCGC 3 cut(s) 87, 89, 885
Hin6I GCGC 3 cut(s) 85, 87, 883
HinP1I GCGC 3 cut(s) 85, 87, 883
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 113, 1114
HinfI GANTC 9 cut(s) 377, 400, 427, 962, 1312, 1350, 1672, 1719, 1768
HpaII CCGG 1 cut(s) 1062
HphI GGTGA 2 cut(s) 314, 1717
Hpy166II GTNNAC 7 cut(s) 193, 281, 1043, 1137, 1191, 1231, 1569
Hpy188I TCNGA 3 cut(s) 73, 1181, 1795
Hpy8I GTNNAC 7 cut(s) 193, 281, 1043, 1137, 1191, 1231, 1569
HpyAV CCTTC 8 cut(s) 392, 406, 700, 719, 977, 1483, 1529, 1838
HpyCH4III ACNGT 2 cut(s) 126, 1444
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 9 cut(s) 65, 540, 791, 806, 857, 1367, 1523, 1649, 1778
HpyF10VI GCNNNNNNNGC 7 cut(s) 93, 788, 809, 1103, 1255, 1655, 1787
HpyF3I CTNAG 6 cut(s) 182, 296, 530, 720, 1730, 1794
HpySE526I ACGT 1 cut(s) 189
HspAI GCGC 3 cut(s) 85, 87, 883
LmnI GCTCC 3 cut(s) 260, 1109, 1516
LweI GCATC 1 cut(s) 1645
MaeI CTAG 5 cut(s) 162, 207, 1098, 1505, 1782
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 4 cut(s) 38, 302, 533, 922
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 3 cut(s) 292, 592, 1799
MhlI GDGCHC 2 cut(s) 59, 1329
MlyI GAGTC 2 cut(s) 394, 1728
MmeI TCCRAC 2 cut(s) 1238, 1249
MroXI GAANNNNTTC 3 cut(s) 114, 381, 966
MseI TTAA 6 cut(s) 81, 650, 1122, 1557, 1601, 1739
MslI CAYNNNNRTG 1 cut(s) 1320
MspA1I CMGCKG 5 cut(s) 96, 393, 803, 1014, 1577
MspCI CTTAAG 1 cut(s) 1556
MspI CCGG 1 cut(s) 1062
MspR9I CCNGG 1 cut(s) 1062
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 1 cut(s) 19
MvnI CGCG 2 cut(s) 87, 1855
MwoI GCNNNNNNNGC 7 cut(s) 93, 788, 809, 1103, 1255, 1655, 1787
NciI CCSGG 1 cut(s) 1062
NcoI CCATGG 2 cut(s) 643, 945
NheI GCTAGC 1 cut(s) 1781
NlaIV GGNNCC 5 cut(s) 262, 365, 943, 1057, 1801
NmuCI GTSAC 1 cut(s) 302
NruI TCGCGA 1 cut(s) 1855
NspI RCATGY 1 cut(s) 1249
PaeI GCATGC 1 cut(s) 1249
PauI GCGCGC 1 cut(s) 85
PceI AGGCCT 1 cut(s) 1020
PctI GAATGC 1 cut(s) 19
PdmI GAANNNNTTC 3 cut(s) 114, 381, 966
PfeI GAWTC 7 cut(s) 377, 427, 962, 1312, 1350, 1672, 1768
PflMI CCANNNNNTGG 1 cut(s) 457
PleI GAGTC 2 cut(s) 394, 1727
PpsI GAGTC 2 cut(s) 394, 1727
PshBI ATTAAT 1 cut(s) 1122
PspN4I GGNNCC 5 cut(s) 262, 365, 943, 1057, 1801
PspPI GGNCC 3 cut(s) 363, 1055, 1734
PstI CTGCAG 3 cut(s) 793, 808, 859
PstNI CAGNNNCTG 3 cut(s) 130, 537, 1682
PsuI RGATCY 3 cut(s) 292, 592, 1799
PteI GCGCGC 1 cut(s) 85
PvuII CAGCTG 4 cut(s) 96, 393, 803, 1577
RruI TCGCGA 1 cut(s) 1855
RsaI GTAC 4 cut(s) 134, 160, 465, 1570
RsaNI GTAC 4 cut(s) 133, 159, 464, 1569
RseI CAYNNNNRTG 1 cut(s) 1320
SaqAI TTAA 6 cut(s) 81, 650, 1122, 1557, 1601, 1739
Sau96I GGNCC 3 cut(s) 363, 1055, 1734
ScaI AGTACT 2 cut(s) 160, 465
SchI GAGTC 2 cut(s) 394, 1728
ScrFI CCNGG 1 cut(s) 1062
SduI GDGCHC 2 cut(s) 59, 1329
SfaNI GCATC 1 cut(s) 1645
SfcI CTRYAG 3 cut(s) 789, 804, 855
SinI GGWCC 1 cut(s) 1055
SmiMI CAYNNNNRTG 1 cut(s) 1320
SmlI CTYRAG 3 cut(s) 154, 1330, 1556
SmoI CTYRAG 3 cut(s) 154, 1330, 1556
SpeI ACTAGT 1 cut(s) 161
SphI GCATGC 1 cut(s) 1249
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 3 cut(s) 317, 1014, 1610
SspI AATATT 1 cut(s) 34
SspMI CTAG 5 cut(s) 162, 207, 1098, 1505, 1782
StuI AGGCCT 1 cut(s) 1020
StyD4I CCNGG 1 cut(s) 1060
StyI CCWWGG 3 cut(s) 274, 643, 945
TaaI ACNGT 2 cut(s) 126, 1444
TaiI ACGT 1 cut(s) 192
TaqI TCGA 4 cut(s) 354, 503, 864, 1348
TatI WGTACW 4 cut(s) 132, 158, 463, 1568
TfiI GAWTC 7 cut(s) 377, 427, 962, 1312, 1350, 1672, 1768
Tru1I TTAA 6 cut(s) 81, 650, 1122, 1557, 1601, 1739
Tru9I TTAA 6 cut(s) 81, 650, 1122, 1557, 1601, 1739
TscAI CASTG 4 cut(s) 304, 682, 784, 1829
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 1684
TspRI CASTG 4 cut(s) 304, 682, 784, 1829
Van91I CCANNNNNTGG 1 cut(s) 457
Vha464I CTTAAG 1 cut(s) 1556
VpaK11BI GGWCC 1 cut(s) 1055
VspI ATTAAT 1 cut(s) 1122
XagI CCTNNNNNAGG 2 cut(s) 723, 1035
XapI RAATTY 3 cut(s) 67, 872, 1422
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 1249
XmiI GTMKAC 3 cut(s) 1042, 1136, 1230
XmnI GAANNNNTTC 3 cut(s) 114, 381, 966
XspI CTAG 5 cut(s) 162, 207, 1098, 1505, 1782
ZrmI AGTACT 2 cut(s) 160, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.