Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

2135890 .. 2138492

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0030900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCTGATACGTTCTGCCAAGCGTGCAAGTGTTTCACGGAGGTTGTTGTCTCCGACCACGCGACCGGCGGCACCTCGTCGTGCTCCGAATGTGGGACTGTTGTGGTGGACGAGGTTCCCGAGTGGGTTTCTGTCCCCGACCGGGAAGACCCGACCCGGGAGCCCAGCAAGCCGGTTGGACCCGAGAGTGGGGTTTCCGGGTCCAATGGAGCAGCAGCCTCCGACGAGGAGGCATCGCCGGCGCGGCGGGGGAAGCGGCGGAGGAGGCCACGCCCTCCGCCTTTTGACGGGTTTGGTTCTATTGCTGCCGTGTCTGACAGGTTGGGAATTGTTGCTGCCATAAAGGATCGAGCCAATGATATATATAAGAAGGTGGTTGATCAGAAACCTCTCAAATTTAGGACTCCGGATGCAGTTGTGGCTGCTTGCGTCTACATTGCCTGTAGACAAGAAAATAAGCCCTGTACTGTGAAAGAGATGTGCTCAGCAAATGGAGCTACCAAGAAAGAAGTTGCCAGGGCAAAAGACTTCATCATGAAATACTTGGAGACTGAGGGTCAGGAAATAGGAACTATTCATGCTGCAGACTTTCTGAGACGTTTTTGTTCCGTTCTTGGAATGTCAAATATAGAAGTCATGGCTGCCCAAGAAACAGTGAAGAAATCTGAAGAACTTGTTTTAAGGAGGAGCCCAATATCGCTGGCAGCTGTTGTCATTTATATCATTACTCAACTATCAAATGACAAAAAGGGTGTTAAAGATATTGCGTTTGTCACTAGAGTGGCCGAAGCGACCATAAAAAATTCGTACAAAGATCTGTATCCTCATCTGTCAGAGGTCATACCAGCCTGGTTTGCCAAGGAGGAAGATTTGAGGCAGCTGCCACCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017076 GO:0017111 GO:0019867 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

297

Amino Acids

32.43

Weight (kDa)

7.47

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	96 - 172	6.2e-15	Transcription factor TFIIB repeat
TFIIB	PF00382	191 - 275	8.5e-12	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	432, 445
AccII	CGCG	2 cut(s)	62, 244
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	6 cut(s)	69, 244, 247, 256, 259, 278
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	395, 802
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	2 cut(s)	466, 809
AfiI	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	2 cut(s)	515, 848
AleI	CACNNNNGTG	1 cut(s)	779
AluBI	AGCT	4 cut(s)	497, 707, 880, 890
AluI	AGCT	4 cut(s)	497, 707, 880, 890
Alw21I	GWGCWC	2 cut(s)	86, 485
Alw26I	GTCTC	3 cut(s)	55, 542, 589
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	3 cut(s)	119, 156, 182
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	2 cut(s)	266, 783
ApoI	RAATTY	2 cut(s)	395, 802
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	179, 201
AsuC2I	CCSGG	4 cut(s)	143, 157, 158, 199
AvaI	CYCGRG	3 cut(s)	119, 156, 182
AvaII	GGWCC	2 cut(s)	179, 201
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	165, 692
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	86, 485
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	2 cut(s)	517, 850
BciVI	GTATCC	1 cut(s)	831
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	4 cut(s)	143, 157, 158, 199
BcoDI	GTCTC	3 cut(s)	55, 542, 589
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	2 cut(s)	442, 582
BfuI	GTATCC	1 cut(s)	831
BglI	GCCNNNNNGGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	814
BlpI	GCTNAGC	1 cut(s)	484
Bme1390I	CCNGG	6 cut(s)	143, 157, 158, 199, 517, 850
Bme18I	GGWCC	2 cut(s)	179, 201
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmeT110I	CYCGRG	3 cut(s)	119, 156, 182
BmgT120I	GGNCC	2 cut(s)	179, 201
BmiI	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 689
BmrFI	CCNGG	6 cut(s)	143, 157, 158, 199, 517, 850
BmsI	GCATC	2 cut(s)	242, 400
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu1102I	GCTNAGC	1 cut(s)	484
BpuMI	CCSGG	4 cut(s)	143, 157, 158, 199
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	156, 516, 858
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
Bse118I	RCCGGY	3 cut(s)	65, 172, 238
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	517, 850
BseDI	CCNNGG	3 cut(s)	156, 516, 858
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	498, 543, 584
BseRI	GAGGAG	3 cut(s)	242, 277, 700
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	62, 244
Bsh1285I	CGRYCG	2 cut(s)	66, 142
BshFI	GGCC	2 cut(s)	268, 785
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	66, 142
BsiHKAI	GWGCWC	2 cut(s)	86, 485
BsiHKCI	CYCGRG	3 cut(s)	119, 156, 182
BsiSI	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
BslFI	GGGAC	2 cut(s)	109, 119
BslI	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
BsmAI	GTCTC	3 cut(s)	55, 542, 589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	109, 119
BsnI	GGCC	2 cut(s)	268, 785
BsoBI	CYCGRG	3 cut(s)	119, 156, 182
Bsp1286I	GDGCHC	4 cut(s)	86, 165, 485, 692
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	346, 379, 814
Bsp1720I	GCTNAGC	1 cut(s)	484
BspACI	CCGC	6 cut(s)	69, 244, 247, 256, 259, 278
BspANI	GGCC	2 cut(s)	268, 785
BspCNI	CTCAG	3 cut(s)	497, 544, 585
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	2 cut(s)	62, 244
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 689
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	3 cut(s)	65, 172, 238
BssAI	RCCGGY	3 cut(s)	65, 172, 238
BssECI	CCNNGG	3 cut(s)	156, 516, 858
BssMI	GATC	3 cut(s)	346, 379, 814
BssT1I	CCWWGG	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	517, 850
Bst4CI	ACNGT	3 cut(s)	100, 469, 655
BstC8I	GCNNGC	5 cut(s)	25, 170, 240, 427, 702
BstDEI	CTNAG	3 cut(s)	484, 552, 593
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	62, 244
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	349, 382, 817
BstMAI	GTCTC	3 cut(s)	55, 542, 589
BstMBI	GATC	3 cut(s)	346, 379, 814
BstMCI	CGRYCG	2 cut(s)	66, 142
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 169, 239, 244, 253, 265, 419, 494, 854
BstNI	CCWGG	2 cut(s)	517, 850
BstSCI	CCNGG	6 cut(s)	141, 155, 156, 197, 515, 848
BstSFI	CTRYAG	2 cut(s)	442, 582
BstUI	CGCG	2 cut(s)	62, 244
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	2 cut(s)	268, 785
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	5 cut(s)	25, 170, 240, 427, 702
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	3 cut(s)	65, 172, 238
Cfr13I	GGNCC	2 cut(s)	179, 201
Cfr9I	CCCGGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	465, 808
CviAII	CATG	3 cut(s)	535, 578, 637
CviQI	GTAC	2 cut(s)	465, 808
DdeI	CTNAG	3 cut(s)	484, 552, 593
DpnI	GATC	3 cut(s)	348, 381, 816
DpnII	GATC	3 cut(s)	346, 379, 814
DriI	GACNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	783
Eam1105I	GACNNNNNGTC	1 cut(s)	555
EciI	GGCGGA	2 cut(s)	267, 274
Eco130I	CCWWGG	1 cut(s)	858
Eco24I	GRGCYC	2 cut(s)	165, 692
Eco47I	GGWCC	2 cut(s)	179, 201
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	3 cut(s)	119, 156, 182
EcoRII	CCWGG	2 cut(s)	515, 848
EcoT14I	CCWWGG	1 cut(s)	858
EcoT38I	GRGCYC	2 cut(s)	165, 692
ErhI	CCWWGG	1 cut(s)	858
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	3 cut(s)	538, 581, 640
FaqI	GGGAC	2 cut(s)	109, 119
FatI	CATG	3 cut(s)	534, 577, 636
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	432, 445
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	2 cut(s)	165, 692
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	268, 785
HapII	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	538, 581, 640
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
Hpy166II	GTNNAC	3 cut(s)	109, 433, 446
Hpy188I	TCNGA	9 cut(s)	7, 55, 88, 223, 316, 384, 594, 667, 835
Hpy188III	TCNNGA	4 cut(s)	119, 407, 535, 560
Hpy8I	GTNNAC	3 cut(s)	109, 433, 446
Hpy99I	CGWCG	2 cut(s)	82, 227
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	3 cut(s)	100, 469, 655
HpyCH4IV	ACGT	2 cut(s)	11, 598
HpyCH4V	TGCA	3 cut(s)	27, 413, 584
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 169, 239, 244, 253, 265, 419, 494, 854
HpyF3I	CTNAG	3 cut(s)	484, 552, 593
HpySE526I	ACGT	2 cut(s)	11, 598
Hsp92II	CATG	3 cut(s)	538, 581, 640
HspAI	GCGC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	346, 379, 814
LmnI	GCTCC	5 cut(s)	89, 160, 209, 494, 687
LweI	GCATC	2 cut(s)	242, 400
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	11, 598
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	3 cut(s)	348, 381, 816
MboI	GATC	3 cut(s)	346, 379, 814
MboII	GAAGA	4 cut(s)	158, 670, 680, 878
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	4 cut(s)	86, 165, 485, 692
MluCI	AATT	3 cut(s)	327, 395, 802
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	3 cut(s)	78, 157, 246
MreI	CGCCGGCG	1 cut(s)	238
MroI	TCCGGA	1 cut(s)	406
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	3 cut(s)	680, 756, 892
MslI	CAYNNNNRTG	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	707, 880
MspI	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
MspR9I	CCNGG	6 cut(s)	143, 157, 158, 199, 517, 850
MvaI	CCWGG	2 cut(s)	517, 850
MvnI	CGCG	2 cut(s)	62, 244
MwoI	GCNNNNNNNGC	9 cut(s)	24, 169, 239, 244, 253, 265, 419, 494, 854
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	4 cut(s)	143, 157, 158, 199
NdeII	GATC	3 cut(s)	346, 379, 814
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	538, 581, 640
NlaIV	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 689
NmuCI	GTSAC	1 cut(s)	772
OliI	CACNNNNGTG	1 cut(s)	779
PagI	TCATGA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	515, 848
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	515, 848
PspN4I	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 689
PspPI	GGNCC	2 cut(s)	179, 201
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	814
PvuII	CAGCTG	2 cut(s)	707, 880
RsaI	GTAC	2 cut(s)	466, 809
RsaNI	GTAC	2 cut(s)	465, 808
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	3 cut(s)	680, 756, 892
Sau3AI	GATC	3 cut(s)	346, 379, 814
Sau96I	GGNCC	2 cut(s)	179, 201
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	6 cut(s)	143, 157, 158, 199, 517, 850
SduI	GDGCHC	4 cut(s)	86, 165, 485, 692
SfaNI	GCATC	2 cut(s)	242, 400
SfcI	CTRYAG	2 cut(s)	442, 582
SgrAI	CRCCGGYG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	179, 201
SmaI	CCCGGG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	779
Sse9I	AATT	3 cut(s)	327, 395, 802
SsiI	CCGC	6 cut(s)	69, 244, 247, 256, 259, 278
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	6 cut(s)	141, 155, 156, 197, 515, 848
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	3 cut(s)	100, 469, 655
TaiI	ACGT	2 cut(s)	14, 601
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	327, 395, 802
TatI	WGTACW	1 cut(s)	464
TauI	GCSGC	3 cut(s)	72, 247, 259
Tru1I	TTAA	3 cut(s)	680, 756, 892
Tru9I	TTAA	3 cut(s)	680, 756, 892
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	772
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	3 cut(s)	520, 551, 566
TspGWI	ACGGA	2 cut(s)	53, 598
TspMI	CCCGGG	1 cut(s)	156
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	179, 201
XapI	RAATTY	2 cut(s)	395, 802
XmaI	CCCGGG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	432, 445
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.