Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

37408282 .. 37408548

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG356200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCCCTAGTGGAAGGGGCTGCTTTAGGAACTCTATTTGGAATGATGTATGATTTGGTTAAGGCAGCAATTGGCAAGAGTGTAGAGTTTAAACCCCTCCTAAGAGCCCCAAAATCCACACTAGAGTCTTTACAACCACAGATTATCCAACAGATAGGAGTGCAAAATGTTGCATTAGGTCTCCCAAACCACGAAATAGAAACTCTTGAAAGACAAATGCTGGAAGGCCTAAATCTCATTCAAGAGCTGTCGAATGCCCGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.63

Weight (kDa)

5.25

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	3 - 85	1.3e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	209, 242
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	3, 226
ApeKI	GCWGC	2 cut(s)	20, 65
AspS9I	GGNCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	7, 77
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	8, 122
BisI	GCNGC	2 cut(s)	21, 66
BlsI	GCNGC	2 cut(s)	22, 67
BmgT120I	GGNCC	1 cut(s)	4
BsaI	GGTCTC	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	7, 77
BshFI	GGCC	2 cut(s)	5, 228
BsmAI	GTCTC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	5, 228
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	5, 228
BspTNI	GGTCTC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	7, 77
BsuRI	GGCC	2 cut(s)	5, 228
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	5 cut(s)	5, 20, 107, 228, 247
CviKI_1	RGCY	5 cut(s)	5, 20, 107, 228, 247
DdeI	CTNAG	1 cut(s)	101
DraI	TTTAAA	1 cut(s)	91
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	109
FaiI	YATR	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	21, 66
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	21, 66
FspBI	CTAG	2 cut(s)	8, 122
GluI	GCNGC	2 cut(s)	21, 66
HaeIII	GGCC	2 cut(s)	5, 228
HinfI	GANTC	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	206, 242
HpyAV	CCTTC	2 cut(s)	8, 218
HpyCH4V	TGCA	2 cut(s)	163, 173
HpyF3I	CTNAG	1 cut(s)	101
LpnPI	CCDG	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	7, 77
MaeI	CTAG	2 cut(s)	8, 122
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	1 cut(s)	107
MseI	TTAA	2 cut(s)	60, 90
MssI	GTTTAAAC	1 cut(s)	91
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	22, 67
PleI	GAGTC	1 cut(s)	133
PmeI	GTTTAAAC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	60, 90
SatI	GCNGC	2 cut(s)	21, 66
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	2 cut(s)	181, 249
SgeI	CNNG	7 cut(s)	20, 88, 134, 203, 218, 233, 254
Sse9I	AATT	1 cut(s)	69
SseBI	AGGCCT	1 cut(s)	228
SspMI	CTAG	2 cut(s)	8, 122
StuI	AGGCCT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	60, 90
Tru9I	TTAA	2 cut(s)	60, 90
TseI	GCWGC	2 cut(s)	20, 65
XspI	CTAG	2 cut(s)	8, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.