Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

16157508 .. 16157975

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTGCTGCGCTTGCTGGTGGAGCAGTGTTAGGGACAGTATTTTCAGAGCTGTACAAGGGCGTTCAGACACTGATCAGAACATCTAAGCATTTTAAAGACCTTGCCAAAAACATTAAATTGAAATTAGAATGCTTGCTACCACTGATCAAGCAGATTGAGGAACAAAACATGGAACTTGGTCGCTCGAACCAGTGCACAGAAAAATTTAAAATAGAAATAGTCGAGGGCCTAGAGCTTGTCCAAAATTGCTGTAAGGTTGGTCCATTGGAAATATCCAAACAGAGGAATTACATCAGAGAACTTCGTGAGTTGGATGGTTCACTTAAGAACTGGTTAGATATACTCATGTCGGATGGAGTGAGAGATGGGAAGGAGACCTTGCAATCGGTGAGGACGATGACTAAAATGGTGATGGCCATGTTTATTGTTCTTCTGGGGTTCTTGTCACAACTATCATTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

155

Amino Acids

17.46

Weight (kDa)

8.68

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	4 - 136	1.5e-20	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	52, 238
AluI	AGCT	2 cut(s)	52, 238
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	229, 417
ApaLI	GTGCAC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	229, 263
AsuHPI	GGTGA	2 cut(s)	403, 424
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	200
BccI	CCATC	4 cut(s)	311, 350, 362, 409
BclI	TGATCA	2 cut(s)	75, 147
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	229, 263
BsaI	GGTCTC	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	193, 338
BseGI	GGATG	2 cut(s)	322, 361
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	193, 338
BseSI	GKGCMC	1 cut(s)	200
BshFI	GGCC	2 cut(s)	231, 419
BsiHKAI	GWGCWC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	231, 419
Bso31I	GGTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	75, 147
BspANI	GGCC	2 cut(s)	231, 419
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	193, 338
BssMI	GATC	2 cut(s)	75, 147
Bst4CI	ACNGT	1 cut(s)	40
BstAFI	CTTAAG	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	15, 137
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	322, 361
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	78, 150
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	75, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 23
BstSLI	GKGCMC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	231, 419
BtsCI	GGATG	2 cut(s)	322, 361
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	33, 71, 143, 200
Cac8I	GCNNGC	2 cut(s)	15, 137
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	229, 263
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	3 cut(s)	172, 349, 421
CviJI	RGCY	5 cut(s)	5, 52, 231, 238, 419
CviKI_1	RGCY	5 cut(s)	5, 52, 231, 238, 419
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	77, 149
DpnII	GATC	2 cut(s)	75, 147
DraI	TTTAAA	2 cut(s)	97, 211
EaeI	YGGCCR	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	229
FaeI	CATG	3 cut(s)	175, 352, 424
FaiI	YATR	5 cut(s)	173, 344, 350, 422, 466
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	171, 348, 420
FbaI	TGATCA	2 cut(s)	75, 147
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	2 cut(s)	329, 368
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	6, 9
HaeIII	GGCC	2 cut(s)	231, 419
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	175, 352, 424
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	403, 424
Hpy166II	GTNNAC	2 cut(s)	198, 323
Hpy188I	TCNGA	5 cut(s)	49, 69, 80, 299, 355
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	198, 323
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	198, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 23
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	175, 352, 424
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	2 cut(s)	75, 147
Kzo9I	GATC	2 cut(s)	75, 147
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	4 cut(s)	3, 206, 319, 422
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	2 cut(s)	77, 149
MboI	GATC	2 cut(s)	75, 147
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	5 cut(s)	119, 125, 206, 247, 289
MluNI	TGGCCA	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	294, 333
MnlI	CCTC	4 cut(s)	154, 220, 279, 387
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	4 cut(s)	96, 117, 210, 327
Msp20I	TGGCCA	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	14, 23
NdeII	GATC	2 cut(s)	75, 147
NlaIII	CATG	3 cut(s)	175, 352, 424
NmuCI	GTSAC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PctI	GAATGC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	7, 10
PsiI	TTATAA	1 cut(s)	466
PspPI	GGNCC	2 cut(s)	229, 263
PstNI	CAGNNNCTG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	96, 117, 210, 327
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	2 cut(s)	75, 147
Sau96I	GGNCC	2 cut(s)	229, 263
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	5 cut(s)	54, 105, 240, 261, 383
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	5 cut(s)	119, 125, 206, 247, 289
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	188, 225
TasI	AATT	5 cut(s)	119, 125, 206, 247, 289
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	4 cut(s)	96, 117, 210, 327
Tru9I	TTAA	4 cut(s)	96, 117, 210, 327
TscAI	CASTG	4 cut(s)	33, 78, 150, 200
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	1 cut(s)	447
TspRI	CASTG	4 cut(s)	33, 78, 150, 200
Vha464I	CTTAAG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	206
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.