Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

2077045 .. 2077917

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTTGTGGTCAAGCAAACTGCTAAACAACTTGTTCAGTTCCAAGAGTTCAATGAAAGACTGTTAAGAGAACGGACTTTGCTGCAAGAAGATGCGAGAGGTTTGCAGGAGAAGTTTGTTTTGCAACTGCAAAACAACGGGGAACAGCTGCTTCAATTGCAACGAGTGATAGAGGACATGATGATGCAGCAAGAAGCAAGGGGAGTGACTGATAGCGAAACAGGGGATCTGGTTGGAGCGGCTGCTCTGGTGACACTATTTAAGGTGCTGTTTCAAAATGTTCAGCACCTGTCCAAACAGAATGTCACATATAAACCCGTCCTCAGAAATATCAAATCGACTCTAGACTCTTTAGTACCACTGATCGAAGGGATAGAGGAGACCAATCGGTTCTTGAGCTATAGCGAGAAGAGGCAGATCCATCGTCTTGCAATACAAATGCGAGCTCGTGTAGAGCTCTTTCGCAGGTGCTCGAAGGTTTCTACTTGGAACATCTACAAGAGCTTGTCATACAGCAACAAACTTATTCAATGGGACGAATCTCTACAAAGACTGATTCCACAGCATTACGAACAACCAGGTAGTGCACCTGCCCATTTTACATATGACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

215

Amino Acids

25.05

Weight (kDa)

8.97

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	86 - 196	2.8e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	486, 628
Acc36I	ACCTGC	2 cut(s)	486, 628
AccBSI	CCGCTC	1 cut(s)	269
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	264, 442
AfaI	GTAC	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	82, 185, 305, 560
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	5 cut(s)	178, 429, 476, 487, 534
AluI	AGCT	5 cut(s)	178, 429, 476, 487, 534
Alw21I	GWGCWC	4 cut(s)	478, 489, 503, 619
Alw26I	GTCTC	1 cut(s)	404
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	264, 442
AlwNI	CAGNNNCTG	1 cut(s)	319
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	5 cut(s)	4, 112, 178, 217, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	478, 489
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	4 cut(s)	478, 489, 503, 619
BbvI	GCAGC	5 cut(s)	16, 99, 165, 229, 259
BccI	CCATC	1 cut(s)	459
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 434, 468
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	430
BfuAI	ACCTGC	2 cut(s)	486, 628
BisI	GCNGC	6 cut(s)	5, 113, 179, 218, 270, 273
BlsI	GCNGC	6 cut(s)	6, 114, 180, 219, 271, 274
Bme1390I	CCNGG	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	112, 204
BpuEI	CTTGAG	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	5 cut(s)	16, 99, 165, 229, 259
BsiHKAI	GWGCWC	4 cut(s)	478, 489, 503, 619
BslFI	GGGAC	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	578
Bso31I	GGTCTC	1 cut(s)	404
Bsp1286I	GDGCHC	4 cut(s)	478, 489, 503, 619
Bsp143I	GATC	3 cut(s)	256, 393, 447
BspACI	CCGC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	486, 628
BspPI	GGATC	2 cut(s)	264, 442
BspTNI	GGTCTC	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	269
BssMI	GATC	3 cut(s)	256, 393, 447
BssSI	CACGAG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	9, 474
BstDEI	CTNAG	1 cut(s)	353
BstKTI	GATC	3 cut(s)	259, 396, 450
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	256, 393, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	5 cut(s)	16, 99, 165, 229, 259
BstX2I	RGATCY	2 cut(s)	256, 447
BstYI	RGATCY	2 cut(s)	256, 447
BtsIMutI	CAGTG	1 cut(s)	389
BveI	ACCTGC	2 cut(s)	486, 628
Cac8I	GCNNGC	2 cut(s)	9, 474
CaiI	CAGNNNCTG	1 cut(s)	319
CsiI	ACCWGGT	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	6 cut(s)	178, 272, 429, 476, 487, 534
CviKI_1	RGCY	6 cut(s)	178, 272, 429, 476, 487, 534
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	3 cut(s)	258, 395, 449
DpnII	GATC	3 cut(s)	256, 393, 447
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	2 cut(s)	476, 487
Eco24I	GRGCYC	2 cut(s)	478, 489
Eco31I	GGTCTC	1 cut(s)	404
Eco53kI	GAGCTC	2 cut(s)	476, 487
EcoICRI	GAGCTC	2 cut(s)	476, 487
EcoRII	CCWGG	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	478, 489
FaeI	CATG	1 cut(s)	211
FaiI	YATR	7 cut(s)	209, 340, 342, 432, 541, 634, 636
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	1 cut(s)	207
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	6 cut(s)	5, 113, 179, 218, 270, 273
FriOI	GRGCYC	2 cut(s)	478, 489
Fsp4HI	GCNGC	6 cut(s)	5, 113, 179, 218, 270, 273
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	6 cut(s)	5, 113, 179, 218, 270, 273
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	4 cut(s)	370, 377, 569, 586
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	2 cut(s)	356, 644
Hpy188III	TCNNGA	2 cut(s)	374, 424
Hpy8I	GTNNAC	1 cut(s)	617
HpyAV	CCTTC	2 cut(s)	392, 499
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	9 cut(s)	4, 115, 136, 154, 160, 190, 217, 461, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	256, 393, 447
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	9 cut(s)	122, 237, 245, 263, 332, 481, 594, 621, 633
Lsp1109I	GCAGC	5 cut(s)	16, 99, 165, 229, 259
LweI	GCATC	2 cut(s)	112, 204
MabI	ACCWGGT	1 cut(s)	607
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	3 cut(s)	235, 280, 334
MalI	GATC	3 cut(s)	258, 395, 449
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	3 cut(s)	256, 393, 447
MboII	GAAGA	2 cut(s)	131, 451
MfeI	CAATTG	1 cut(s)	185
MflI	RGATCY	2 cut(s)	256, 447
MhlI	GDGCHC	4 cut(s)	478, 489, 503, 619
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	364, 371
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	122, 196, 362, 400, 435
MseI	TTAA	3 cut(s)	21, 95, 291
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	3 cut(s)	256, 393, 447
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	235, 280, 334
PaqCI	CACCTGC	2 cut(s)	486, 628
PfeI	GAWTC	2 cut(s)	569, 586
PkrI	GCNGC	6 cut(s)	6, 114, 180, 219, 271, 274
PleI	GAGTC	2 cut(s)	364, 371
PpsI	GAGTC	2 cut(s)	364, 371
Psp124BI	GAGCTC	2 cut(s)	478, 489
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	256, 447
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	2 cut(s)	478, 489
SaqAI	TTAA	3 cut(s)	21, 95, 291
SatI	GCNGC	6 cut(s)	5, 113, 179, 218, 270, 273
Sau3AI	GATC	3 cut(s)	256, 393, 447
SchI	GAGTC	2 cut(s)	364, 371
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	4 cut(s)	478, 489, 503, 619
SexAI	ACCWGGT	1 cut(s)	607
SfaNI	GCATC	2 cut(s)	112, 204
SfcI	CTRYAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	2 cut(s)	478, 489
StyD4I	CCNGG	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	368, 396, 503
TasI	AATT	1 cut(s)	185
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	569, 586
Tru1I	TTAA	3 cut(s)	21, 95, 291
Tru9I	TTAA	3 cut(s)	21, 95, 291
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	3 cut(s)	235, 280, 334
TseI	GCWGC	5 cut(s)	4, 112, 178, 217, 272
Tsp45I	GTSAC	3 cut(s)	235, 280, 334
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	396
VneI	GTGCAC	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	373
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.