Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

55730193 .. 55731617

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCAGAGGCGCTAGTTGCAGGGGCTGGTCTAGGAGCAGGATTCACAGTGCTGTACGATGTGATTAATAAAGGGATGGTGGGCAAGTTTATGCAATTTAAACCCCTCCTCGCAGCTCTCCGATCGACTCTGGACTCTATACAACCGCTGATCATCCGACAGATAGGTGAGCATAACTTGAAACTGGATCTCCCAAACGAAGAGATACGTGAGCTTGAGAAACAAATGAAGGAAGGCGAAGAACTTATTTGCAAGTTGTCGAAGCTTCGGTGGTGGAACCGCATCAAGTCTCGCTACACCAGCCAACTTGTTGAGTTGGATAGGTCTCTTAAAGCGCTTTTGAAACAAGTACTTATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTCGTAGCCAAGCAAACCGCCAGACAACTTGTCGAATTCCAAGAGTTTAATGAAAGACTGTTAAGAGAGAGGACTTTGCTGCAAGAAGATGCGAGGGAATCACAGGAGAAGTTCCTACTGGCACTGCAAAACAACGGGAAAAAATTAGTTGAATTGCAAGCAGTAATAGAAGAAATGATGAAGCAGCAAGAAGCAAGAGATGTTACTAATGCAGTAGCAGCAGCAGAAGGGAATCAGCTTGAAGAGCCTAATCTGATGTCAATATTCAAGGATCTCTATGAAGCTCTTCAGCAGCTGTTCAACGAAAATAGCACATATAAACCTGTCCTCAGAAGCATCAAGTCTACTTTAGACTCTTTACCACCACTTATTGAAGTGACAGAAAACACAATCCATCTCCGAGTACACGAAAGTTTGAAGGAGATCCTATTGGAGCAGGATCGCGAGCAGTATCGGGAGCTGAAGGAGAAATTGAAAAATGTTAGAATGCAAATGCTAGAGGGCGTCCAGCTCTTCCGCAACTTCTCAAAACATCATCCATGGAACTTCTGCAAGAAGTCCCATAACGCGTACAAATTAATTCAATGGGACGAATCTCTTCAAAGACATGTAAACAAATTAATGGAGAAGAAACGTAGCATCAAAAGTAATTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

349

Amino Acids

40.78

Weight (kDa)

8.93

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 139	1.1e-24	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	731
AccII	CGCG	2 cut(s)	831, 956
AciI	CCGC	4 cut(s)	146, 280, 405, 904
AclWI	GGATC	4 cut(s)	195, 666, 805, 834
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	659, 869
AcyI	GRCGYC	1 cut(s)	891
AfaI	GTAC	4 cut(s)	56, 351, 792, 959
AfeI	AGCGCT	1 cut(s)	336
AflIII	ACRYGT	2 cut(s)	954, 994
AhdI	GACNNNNNGTC	1 cut(s)	416
AluBI	AGCT	8 cut(s)	116, 214, 265, 625, 671, 682, 847, 898
AluI	AGCT	8 cut(s)	116, 214, 265, 625, 671, 682, 847, 898
Alw26I	GTCTC	2 cut(s)	294, 330
AlwI	GGATC	4 cut(s)	195, 666, 805, 834
AlwNI	CAGNNNCTG	2 cut(s)	26, 682
Aor51HI	AGCGCT	1 cut(s)	336
ApeKI	GCWGC	7 cut(s)	113, 358, 466, 571, 605, 608, 679
ApoI	RAATTY	1 cut(s)	422
AseI	ATTAAT	3 cut(s)	66, 965, 1007
Asp700I	GAANNNNTTC	2 cut(s)	672, 984
AspLEI	GCGC	2 cut(s)	13, 337
AsuHPI	GGTGA	1 cut(s)	179
BbvI	GCAGC	7 cut(s)	125, 370, 453, 583, 617, 620, 691
BccI	CCATC	2 cut(s)	70, 789
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	294, 330
BfaI	CTAG	3 cut(s)	14, 32, 884
BfoI	RGCGCY	2 cut(s)	14, 338
BisI	GCNGC	7 cut(s)	114, 359, 467, 572, 606, 609, 680
BlsI	GCNGC	7 cut(s)	115, 360, 468, 573, 607, 610, 681
BmcAI	AGTACT	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	278
BmsI	GCATC	4 cut(s)	291, 466, 732, 1035
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	891
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	926
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	2 cut(s)	189, 510
BseDI	CCNNGG	1 cut(s)	926
BseGI	GGATG	3 cut(s)	81, 153, 922
BseMII	CTCAG	1 cut(s)	730
BseNI	ACTGG	2 cut(s)	189, 510
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	7 cut(s)	125, 370, 453, 583, 617, 620, 691
Bsh1236I	CGCG	2 cut(s)	831, 956
Bsh1285I	CGRYCG	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	931, 989
BsmAI	GTCTC	2 cut(s)	294, 330
BsmFI	GGGAC	2 cut(s)	931, 989
BsmI	GAATGC	1 cut(s)	879
Bso31I	GGTCTC	1 cut(s)	330
Bsp143I	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
Bsp19I	CCATGG	1 cut(s)	926
Bsp68I	TCGCGA	1 cut(s)	831
BspACI	CCGC	4 cut(s)	146, 280, 405, 904
BspCNI	CTCAG	1 cut(s)	729
BspFNI	CGCG	2 cut(s)	831, 956
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	4 cut(s)	195, 666, 805, 834
BspQI	GCTCTTC	3 cut(s)	624, 678, 905
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	189, 510
BssECI	CCNNGG	1 cut(s)	926
BssMI	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
BssNI	GRCGYC	1 cut(s)	891
BssT1I	CCWWGG	1 cut(s)	926
Bst4CI	ACNGT	2 cut(s)	49, 447
Bst6I	CTCTTC	5 cut(s)	195, 624, 678, 905, 990
BstACI	GRCGYC	1 cut(s)	891
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	363, 546, 833
BstDEI	CTNAG	1 cut(s)	716
BstDSI	CCRYGG	1 cut(s)	926
BstF5I	GGATG	3 cut(s)	81, 153, 922
BstFNI	CGCG	2 cut(s)	831, 956
BstH2I	RGCGCY	2 cut(s)	14, 338
BstHHI	GCGC	2 cut(s)	13, 337
BstKTI	GATC	6 cut(s)	125, 153, 190, 661, 813, 829
BstMAI	GTCTC	2 cut(s)	294, 330
BstMBI	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 300, 605, 631
BstNSI	RCATGY	1 cut(s)	998
BstUI	CGCG	2 cut(s)	831, 956
BstV1I	GCAGC	7 cut(s)	125, 370, 453, 583, 617, 620, 691
BstX2I	RGATCY	3 cut(s)	187, 658, 810
BstYI	RGATCY	3 cut(s)	187, 658, 810
BtgI	CCRYGG	1 cut(s)	926
BtsCI	GGATG	3 cut(s)	81, 153, 922
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	54, 509
BtuMI	TCGCGA	1 cut(s)	831
Cac8I	GCNNGC	3 cut(s)	363, 546, 833
CaiI	CAGNNNCTG	2 cut(s)	26, 682
CfoI	GCGC	2 cut(s)	13, 337
CseI	GACGC	1 cut(s)	880
Csp6I	GTAC	4 cut(s)	55, 350, 791, 958
CviAII	CATG	2 cut(s)	927, 995
CviQI	GTAC	4 cut(s)	55, 350, 791, 958
DdeI	CTNAG	1 cut(s)	716
DpnI	GATC	6 cut(s)	124, 152, 189, 660, 812, 828
DpnII	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
DraI	TTTAAA	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	5 cut(s)	195, 624, 678, 905, 990
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	5 cut(s)	195, 624, 678, 905, 990
Eco130I	CCWWGG	1 cut(s)	926
Eco31I	GGTCTC	1 cut(s)	330
Eco47III	AGCGCT	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	659, 869
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	926
ErhI	CCWWGG	1 cut(s)	926
FaeI	CATG	2 cut(s)	930, 998
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	2 cut(s)	931, 989
FatI	CATG	2 cut(s)	926, 994
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	7 cut(s)	114, 359, 467, 572, 606, 609, 680
FokI	GGATG	3 cut(s)	88, 140, 909
Fsp4HI	GCNGC	7 cut(s)	114, 359, 467, 572, 606, 609, 680
FspBI	CTAG	3 cut(s)	14, 32, 884
GlaI	GCGC	2 cut(s)	12, 336
GluI	GCNGC	7 cut(s)	114, 359, 467, 572, 606, 609, 680
HaeII	RGCGCY	2 cut(s)	14, 338
HgaI	GACGC	1 cut(s)	880
HhaI	GCGC	2 cut(s)	13, 337
Hin1I	GRCGYC	1 cut(s)	891
Hin1II	CATG	2 cut(s)	930, 998
Hin6I	GCGC	2 cut(s)	11, 335
HinP1I	GCGC	2 cut(s)	11, 335
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	7 cut(s)	42, 127, 134, 485, 619, 740, 980
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	732, 793, 1000
Hpy188I	TCNGA	6 cut(s)	122, 158, 642, 719, 788, 1046
Hpy188III	TCNNGA	3 cut(s)	131, 830, 842
Hpy8I	GTNNAC	3 cut(s)	732, 793, 1000
HpyAV	CCTTC	5 cut(s)	223, 227, 608, 799, 844
HpyCH4III	ACNGT	2 cut(s)	49, 447
HpyCH4IV	ACGT	2 cut(s)	208, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 300, 605, 631
HpyF3I	CTNAG	1 cut(s)	716
HpySE526I	ACGT	2 cut(s)	208, 1021
Hsp92I	GRCGYC	1 cut(s)	891
Hsp92II	CATG	2 cut(s)	930, 998
HspAI	GCGC	2 cut(s)	11, 335
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
LguI	GCTCTTC	3 cut(s)	624, 678, 905
LmnI	GCTCC	3 cut(s)	35, 820, 844
Lsp1109I	GCAGC	7 cut(s)	125, 370, 453, 583, 617, 620, 691
LweI	GCATC	4 cut(s)	291, 466, 732, 1035
MaeI	CTAG	3 cut(s)	14, 32, 884
MaeII	ACGT	2 cut(s)	208, 1021
MaeIII	GTNAC	2 cut(s)	589, 763
MalI	GATC	6 cut(s)	124, 152, 189, 660, 812, 828
MboI	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
MboII	GAAGA	9 cut(s)	212, 251, 485, 569, 641, 665, 892, 977, 1027
MflI	RGATCY	3 cut(s)	187, 658, 810
MluCI	AATT	9 cut(s)	95, 422, 530, 539, 857, 962, 966, 1004, 1036
MluI	ACGCGT	1 cut(s)	954
MlyI	GAGTC	3 cut(s)	121, 128, 734
MmeI	TCCRAC	2 cut(s)	181, 297
MnlI	CCTC	6 cut(s)	116, 119, 450, 474, 725, 880
MroXI	GAANNNNTTC	2 cut(s)	672, 984
MseI	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 965, 1007
MspA1I	CMGCKG	2 cut(s)	148, 682
Mva1269I	GAATGC	1 cut(s)	879
MvnI	CGCG	2 cut(s)	831, 956
MwoI	GCNNNNNNNGC	4 cut(s)	17, 300, 605, 631
NcoI	CCATGG	1 cut(s)	926
NdeII	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
NlaIII	CATG	2 cut(s)	930, 998
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	763
NruI	TCGCGA	1 cut(s)	831
NspI	RCATGY	1 cut(s)	998
PciI	ACATGT	1 cut(s)	994
PciSI	GCTCTTC	3 cut(s)	624, 678, 905
PctI	GAATGC	1 cut(s)	879
PdmI	GAANNNNTTC	2 cut(s)	672, 984
PfeI	GAWTC	4 cut(s)	42, 485, 619, 980
PkrI	GCNGC	7 cut(s)	115, 360, 468, 573, 607, 610, 681
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	3 cut(s)	121, 128, 734
PpsI	GAGTC	3 cut(s)	121, 128, 734
Ppu21I	YACGTR	1 cut(s)	209
PscI	ACATGT	1 cut(s)	994
PshBI	ATTAAT	3 cut(s)	66, 965, 1007
PspN4I	GGNNCC	1 cut(s)	278
PstNI	CAGNNNCTG	2 cut(s)	26, 682
PsuI	RGATCY	3 cut(s)	187, 658, 810
PvuI	CGATCG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	682
RruI	TCGCGA	1 cut(s)	831
RsaI	GTAC	4 cut(s)	56, 351, 792, 959
RsaNI	GTAC	4 cut(s)	55, 350, 791, 958
SapI	GCTCTTC	3 cut(s)	624, 678, 905
SaqAI	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 965, 1007
SatI	GCNGC	7 cut(s)	114, 359, 467, 572, 606, 609, 680
Sau3AI	GATC	6 cut(s)	122, 150, 187, 658, 810, 826
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	3 cut(s)	121, 128, 734
SfaNI	GCATC	4 cut(s)	291, 466, 732, 1035
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	9 cut(s)	95, 422, 530, 539, 857, 962, 966, 1004, 1036
SsiI	CCGC	4 cut(s)	146, 280, 405, 904
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	3 cut(s)	14, 32, 884
StyI	CCWWGG	1 cut(s)	926
TaaI	ACNGT	2 cut(s)	49, 447
TaiI	ACGT	2 cut(s)	211, 1024
TaqI	TCGA	3 cut(s)	125, 260, 420
TasI	AATT	9 cut(s)	95, 422, 530, 539, 857, 962, 966, 1004, 1036
TatI	WGTACW	2 cut(s)	349, 790
TfiI	GAWTC	4 cut(s)	42, 485, 619, 980
Tru1I	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 965, 1007
Tru9I	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 965, 1007
TscAI	CASTG	2 cut(s)	54, 516
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	7 cut(s)	113, 358, 466, 571, 605, 608, 679
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	4 cut(s)	242, 453, 581, 681
TspRI	CASTG	2 cut(s)	54, 516
VspI	ATTAAT	3 cut(s)	66, 965, 1007
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	998
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	2 cut(s)	672, 984
XspI	CTAG	3 cut(s)	14, 32, 884
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.