Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

2074749 .. 2076328

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAGAGGTGCTAGTTGCTGGGGCAGGTCTAGGAGCAGGATTCACAGTGCTGTACGATGTGATTAATAAAGGGATGGTGGGTAAGTTTATGCAGTTTAAACTCCTCCTAGAAGCTCTCCGATCGACGCTGGACTCCATACAACCACTGATCATCCAGCAGATAGGTGAGCATAACGTAAAACTGGATCTCTCAAATGAAGAAATACGTGAGCTTGAGAGAAAAATGAGGGAAGGGCAGAAACTTATTTGCAAGTTGTCCAAGCTGCGGTGCTGGAACCGCATCAAGTACTCTCGCTATACCAGCCAACTTGTTGAGTTGGATAGGTCTCTTAAAGGGCTTTTGAAACAAGTACTTATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTCGTGGTCAAGCAAACCGCCAGACAACTTGTCGAATTCCAGGAGTTCAATGAAAGACTGTTAAGAGAACGAACTCTACTGCAAGAAGACGCGAGGGAGTTACAGGAGAAGTTCCTACTGGCACTGCACAACAACGGGAAAAAACTTGCTGAATTGCAAGCAGTAATAGAAGAAATGATGAAGCAGCAAGAAGCAAGGGATGTTACTAATGCAGTAGCATCAACAGAAGGTGAGTTTTTCTTGAAAATGGCTTCCAGAGGGAACCATTTGGAATTGTCTAATCTGATGCCACTACACAAGGACCTGTGTGAAGCTCTTCAGCAGCTCTTCAATGAAAATTACAAATATAAACCTGTTCTCAGAAGCATCAAGACTACTTTAGACTCTTTACCACCAATTATTGAAGTGACAGAAAATGCGATCTATCTCCGGGCAGTACGTGAAAGACATATGAAACTCCTATTGGAGCAGGATCATGAGCAGTATGGGAAGCTGAAGGAGAAGTTGAACAATGTTAGAATGAAAATGCTAGAGGGCATAGACCTCTTCGGTAACTTATCTAAGGTTCATCCATGGAACTTCTGCAAAAAGTCCCATAACGCATACAAACTTATTCAATGGGACTCGTCTCTTCAAAAACATGTAAGAAAATTAACGGAGAAGGAACGCAGCATCAAAAGTAATTATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

361

Amino Acids

42.03

Weight (kDa)

9.3

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 140	4.7e-25	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	1 cut(s)	482
AciI	CCGC	3 cut(s)	268, 280, 408
AclWI	GGATC	2 cut(s)	195, 870
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	692, 905
AfaI	GTAC	4 cut(s)	56, 290, 354, 828
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	8 cut(s)	346, 439, 634, 721, 794, 898, 1007, 1025
AhdI	GACNNNNNGTC	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AluBI	AGCT	6 cut(s)	116, 214, 265, 704, 715, 883
AluI	AGCT	6 cut(s)	116, 214, 265, 704, 715, 883
Alw26I	GTCTC	2 cut(s)	333, 1023
AlwI	GGATC	2 cut(s)	195, 870
ApeKI	GCWGC	5 cut(s)	265, 361, 574, 712, 1059
ApoI	RAATTY	1 cut(s)	425
AseI	ATTAAT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	691
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	2 cut(s)	179, 632
AvaII	GGWCC	1 cut(s)	691
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	5 cut(s)	252, 373, 586, 724, 1071
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	431
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	2 cut(s)	333, 1023
BfaI	CTAG	4 cut(s)	14, 32, 110, 920
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	5 cut(s)	266, 362, 575, 713, 1060
BlsI	GCNGC	5 cut(s)	267, 363, 576, 714, 1061
BmcAI	AGTACT	2 cut(s)	290, 354
Bme1390I	CCNGG	2 cut(s)	431, 821
Bme18I	GGWCC	1 cut(s)	691
BmeRI	GACNNNNNGTC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	2 cut(s)	278, 653
BmrFI	CCNGG	2 cut(s)	431, 821
BmsI	GCATC	5 cut(s)	291, 617, 666, 765, 1071
BpiI	GAAGAC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	821
BsaAI	YACGTR	2 cut(s)	209, 830
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	189, 513
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	962
BseGI	GGATG	4 cut(s)	81, 153, 595, 958
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	763
BseNI	ACTGG	2 cut(s)	189, 513
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	5 cut(s)	252, 373, 586, 724, 1071
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	820
BslFI	GGGAC	2 cut(s)	967, 1025
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	333, 1023
BsmBI	CGTCTC	1 cut(s)	1023
BsmFI	GGGAC	2 cut(s)	967, 1025
Bso31I	GGTCTC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	122, 150, 187, 810, 862
Bsp19I	CCATGG	1 cut(s)	962
BspACI	CCGC	3 cut(s)	268, 280, 408
BspCNI	CTCAG	1 cut(s)	762
BspFNI	CGCG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	2 cut(s)	278, 653
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	195, 870
BspQI	GCTCTTC	2 cut(s)	711, 722
BspTNI	GGTCTC	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	189, 513
BssECI	CCNNGG	1 cut(s)	962
BssMI	GATC	5 cut(s)	122, 150, 187, 810, 862
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	962
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	49, 450
Bst6I	CTCTTC	4 cut(s)	711, 722, 941, 1026
BstBAI	YACGTR	2 cut(s)	209, 830
BstC8I	GCNNGC	2 cut(s)	366, 549
BstDEI	CTNAG	2 cut(s)	749, 951
BstDSI	CCRYGG	1 cut(s)	962
BstF5I	GGATG	4 cut(s)	81, 153, 595, 958
BstFNI	CGCG	1 cut(s)	482
BstKTI	GATC	5 cut(s)	125, 153, 190, 813, 865
BstMAI	GTCTC	2 cut(s)	333, 1023
BstMBI	GATC	5 cut(s)	122, 150, 187, 810, 862
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 303
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	2 cut(s)	429, 819
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	5 cut(s)	252, 373, 586, 724, 1071
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	962
BtsCI	GGATG	4 cut(s)	81, 153, 595, 958
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	3 cut(s)	54, 146, 512
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	366, 549
CciI	TCATGA	1 cut(s)	865
Cfr13I	GGNCC	1 cut(s)	691
CseI	GACGC	2 cut(s)	136, 488
Csp6I	GTAC	4 cut(s)	55, 289, 353, 827
CviAII	CATG	3 cut(s)	866, 963, 1031
CviJI	RGCY	9 cut(s)	116, 214, 265, 306, 340, 641, 704, 715, 883
CviKI_1	RGCY	9 cut(s)	116, 214, 265, 306, 340, 641, 704, 715, 883
CviQI	GTAC	4 cut(s)	55, 289, 353, 827
DdeI	CTNAG	2 cut(s)	749, 951
DpnI	GATC	5 cut(s)	124, 152, 189, 812, 864
DpnII	GATC	5 cut(s)	122, 150, 187, 810, 862
DraI	TTTAAA	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	419
Eam1104I	CTCTTC	4 cut(s)	711, 722, 941, 1026
Eam1105I	GACNNNNNGTC	1 cut(s)	419
EarI	CTCTTC	4 cut(s)	711, 722, 941, 1026
Eco130I	CCWWGG	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	692, 905
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	962
Esp3I	CGTCTC	1 cut(s)	1023
FaeI	CATG	3 cut(s)	869, 966, 1034
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	967, 1025
FatI	CATG	3 cut(s)	865, 962, 1030
FauNDI	CATATG	1 cut(s)	840
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	5 cut(s)	266, 362, 575, 713, 1060
FokI	GGATG	4 cut(s)	88, 140, 602, 945
Fsp4HI	GCNGC	5 cut(s)	266, 362, 575, 713, 1060
FspBI	CTAG	4 cut(s)	14, 32, 110, 920
GluI	GCNGC	5 cut(s)	266, 362, 575, 713, 1060
GsaI	CCCAGC	1 cut(s)	24
HapII	CCGG	1 cut(s)	820
HgaI	GACGC	2 cut(s)	136, 488
Hin1II	CATG	3 cut(s)	869, 966, 1034
HinfI	GANTC	4 cut(s)	42, 134, 773, 1013
HpaII	CCGG	1 cut(s)	820
HphI	GGTGA	2 cut(s)	179, 632
Hpy188I	TCNGA	3 cut(s)	122, 675, 752
Hpy188III	TCNNGA	4 cut(s)	631, 645, 760, 866
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	227, 611, 880, 1045
HpyCH4III	ACNGT	2 cut(s)	49, 450
HpyCH4IV	ACGT	3 cut(s)	177, 208, 829
HpyCH4V	TGCA	8 cut(s)	94, 252, 361, 472, 517, 547, 602, 975
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 303
HpyF3I	CTNAG	2 cut(s)	749, 951
HpySE526I	ACGT	3 cut(s)	177, 208, 829
Hsp92II	CATG	3 cut(s)	869, 966, 1034
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	122, 150, 187, 810, 862
LguI	GCTCTTC	2 cut(s)	711, 722
LmnI	GCTCC	2 cut(s)	35, 856
Lsp1109I	GCAGC	5 cut(s)	252, 373, 586, 724, 1071
LweI	GCATC	5 cut(s)	291, 617, 666, 765, 1071
MaeI	CTAG	4 cut(s)	14, 32, 110, 920
MaeII	ACGT	3 cut(s)	177, 208, 829
MaeIII	GTNAC	4 cut(s)	489, 592, 796, 941
MalI	GATC	5 cut(s)	124, 152, 189, 812, 864
MboI	GATC	5 cut(s)	122, 150, 187, 810, 862
MboII	GAAGA	7 cut(s)	212, 488, 572, 698, 709, 928, 1013
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	7 cut(s)	425, 542, 662, 727, 786, 1040, 1072
MlyI	GAGTC	3 cut(s)	128, 767, 1007
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	116, 222, 477, 641, 916, 944
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	6 cut(s)	66, 99, 333, 378, 452, 1043
MspI	CCGG	1 cut(s)	820
MspR9I	CCNGG	2 cut(s)	431, 821
MssI	GTTTAAAC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	279, 303
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	962
NdeI	CATATG	1 cut(s)	840
NdeII	GATC	5 cut(s)	122, 150, 187, 810, 862
NlaIII	CATG	3 cut(s)	869, 966, 1034
NlaIV	GGNNCC	2 cut(s)	278, 653
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	865
PciI	ACATGT	1 cut(s)	1030
PciSI	GCTCTTC	2 cut(s)	711, 722
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	5 cut(s)	267, 363, 576, 714, 1061
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	3 cut(s)	128, 767, 1007
PmeI	GTTTAAAC	1 cut(s)	100
PpsI	GAGTC	3 cut(s)	128, 767, 1007
Ppu21I	YACGTR	2 cut(s)	209, 830
PpuMI	RGGWCCY	1 cut(s)	691
PscI	ACATGT	1 cut(s)	1030
PshBI	ATTAAT	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	278, 653
PspPI	GGNCC	1 cut(s)	691
PspPPI	RGGWCCY	1 cut(s)	691
PsrI	GAACNNNNNNTAC	2 cut(s)	450, 482
PsuI	RGATCY	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	125
RsaI	GTAC	4 cut(s)	56, 290, 354, 828
RsaNI	GTAC	4 cut(s)	55, 289, 353, 827
SapI	GCTCTTC	2 cut(s)	711, 722
SaqAI	TTAA	6 cut(s)	66, 99, 333, 378, 452, 1043
SatI	GCNGC	5 cut(s)	266, 362, 575, 713, 1060
Sau3AI	GATC	5 cut(s)	122, 150, 187, 810, 862
Sau96I	GGNCC	1 cut(s)	691
ScaI	AGTACT	2 cut(s)	290, 354
SchI	GAGTC	3 cut(s)	128, 767, 1007
ScrFI	CCNGG	2 cut(s)	431, 821
SfaNI	GCATC	5 cut(s)	291, 617, 666, 765, 1071
SinI	GGWCC	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	425, 542, 662, 727, 786, 1040, 1072
SsiI	CCGC	3 cut(s)	268, 280, 408
SspMI	CTAG	4 cut(s)	14, 32, 110, 920
StyD4I	CCNGG	2 cut(s)	429, 819
StyI	CCWWGG	1 cut(s)	962
TaaI	ACNGT	2 cut(s)	49, 450
TaiI	ACGT	3 cut(s)	180, 211, 832
TaqI	TCGA	2 cut(s)	125, 423
TasI	AATT	7 cut(s)	425, 542, 662, 727, 786, 1040, 1072
TatI	WGTACW	2 cut(s)	288, 352
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	6 cut(s)	66, 99, 333, 378, 452, 1043
Tru9I	TTAA	6 cut(s)	66, 99, 333, 378, 452, 1043
TscAI	CASTG	3 cut(s)	54, 153, 519
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	5 cut(s)	265, 361, 574, 712, 1059
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	7 cut(s)	213, 456, 584, 738, 857, 926, 947
TspGWI	ACGGA	1 cut(s)	1061
TspRI	CASTG	3 cut(s)	54, 153, 519
VpaK11BI	GGWCC	1 cut(s)	691
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	4 cut(s)	14, 32, 110, 920
ZrmI	AGTACT	2 cut(s)	290, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.