Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

8456755 .. 8457884

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTTGGAGTAGGGGAACTTATTGCAGGAGCTGCTCTGGGATCCCTATTTGGAAAGCTGTACAACGGCGTCAGGAAACTACTGATCAACAAGTCCACACAGTTCACGCCCCTACCCGAAAACATCAAATCAACGCTCCACTCTCTACATCCCCTGATCAAACAGATAGAGCACCACAACATCGAATTAAGTCTCTCAAACAAGGAAGTTGAGGATTTCAAAAAGGTGATCTTCAAGGGCGTGGAGCTGGTTGACAAGTTGTCGAAAGTTCAAAACTGGTACAATAACCCCAGCTACAGAAACCAACTTCAGGAGCTGGATCGATCCCTAAAGAGGCAGTTAGAGATACTGACGGCGGAGGGAGTGAGGGATGGGAAGGAGACGTTGGTTTTGGCGAGGAAGATCTTGCTTTCGGTTTGGAACATGCAGACGGCGTTCAATGCAGTTCATGAGTCGTGGATGGTCATCATGTTTGTTCTATGTTTGGCAAGCATGGCGTTCATGTTTATTGTTGTCTCAGGGACAGCAAGTTGGTTTGTGTTTGGTGTAACTGGCAGTGGTGTATGGTTGGTCTGCAAATTATTTTGGACGTTGTTTCGTATTGTCCTGAAGTTGCTATCAGTTATGTGTAATATTGCAATGGTACCACTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

219

Amino Acids

24.63

Weight (kDa)

9.4

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 130	1.1e-20	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	643
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	4 cut(s)	36, 49, 318, 327
AcuI	CTGAAG	2 cut(s)	293, 629
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	62, 281, 645
AfiI	CCNNNNNNNGG	2 cut(s)	310, 333
AgsI	TTSAA	4 cut(s)	220, 235, 272, 439
AhdI	GACNNNNNGTC	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	6 cut(s)	32, 58, 247, 294, 316, 654
AluI	AGCT	6 cut(s)	32, 58, 247, 294, 316, 654
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	3 cut(s)	197, 374, 520
AlwI	GGATC	4 cut(s)	36, 49, 318, 327
AlwNI	CAGNNNCTG	2 cut(s)	32, 316
ApeKI	GCWGC	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
Asp718I	GGTACC	1 cut(s)	643
AsuHPI	GGTGA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	365, 454
BceAI	ACGGC	3 cut(s)	82, 369, 447
BclI	TGATCA	2 cut(s)	84, 156
BcoDI	GTCTC	3 cut(s)	197, 374, 520
BfmI	CTRYAG	1 cut(s)	295
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	43, 645
Bsa29I	ATCGAT	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 333
Bse1I	ACTGG	2 cut(s)	281, 556
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	464
BseCI	ATCGAT	1 cut(s)	322
BseGI	GGATG	3 cut(s)	148, 376, 465
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	310, 333
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	281, 556
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	2 cut(s)	310, 333
BsmAI	GTCTC	3 cut(s)	197, 374, 520
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
BspACI	CCGC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	530
BspDI	ATCGAT	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	43, 645
BspPI	GGATC	4 cut(s)	36, 49, 318, 327
BspT107I	GGYRCC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	645
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	281, 556
BssMI	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
BssNI	GRCGYC	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	517, 650
BstF5I	GGATG	3 cut(s)	148, 376, 465
BstKTI	GATC	7 cut(s)	44, 87, 159, 231, 322, 326, 405
BstMAI	GTCTC	3 cut(s)	197, 374, 520
BstMBI	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 440, 494
BstNSI	RCATGY	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	41, 402
BstYI	RGATCY	2 cut(s)	41, 402
Bsu15I	ATCGAT	1 cut(s)	322
BsuTUI	ATCGAT	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	148, 376, 465
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	490
CaiI	CAGNNNCTG	2 cut(s)	32, 316
CciI	TCATGA	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	322
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	61, 280, 644
CviAII	CATG	5 cut(s)	424, 449, 469, 493, 502
CviJI	RGCY	6 cut(s)	32, 58, 247, 294, 316, 654
CviKI_1	RGCY	6 cut(s)	32, 58, 247, 294, 316, 654
CviQI	GTAC	3 cut(s)	61, 280, 644
DdeI	CTNAG	2 cut(s)	517, 650
DpnI	GATC	7 cut(s)	43, 86, 158, 230, 321, 325, 404
DpnII	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	293, 629
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	5 cut(s)	427, 452, 472, 496, 505
FaiI	YATR	8 cut(s)	425, 450, 470, 481, 494, 503, 565, 626
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	5 cut(s)	423, 448, 468, 492, 501
FbaI	TGATCA	2 cut(s)	84, 156
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	135, 383, 472
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	294
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	427, 452, 472, 496, 505
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	452
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	96, 105, 253
Hpy188III	TCNNGA	4 cut(s)	73, 311, 449, 607
Hpy8I	GTNNAC	3 cut(s)	96, 105, 253
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	2 cut(s)	383, 590
HpyCH4V	TGCA	5 cut(s)	26, 427, 443, 576, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 440, 494
HpyF3I	CTNAG	2 cut(s)	517, 650
HpySE526I	ACGT	2 cut(s)	383, 590
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	427, 452, 472, 496, 505
KpnI	GGTACC	1 cut(s)	647
Ksp22I	TGATCA	2 cut(s)	84, 156
Kzo9I	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
LmnI	GCTCC	4 cut(s)	29, 141, 244, 313
Lsp1109I	GCAGC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	383, 590
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	7 cut(s)	43, 86, 158, 230, 321, 325, 404
MboI	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
MboII	GAAGA	2 cut(s)	223, 412
MflI	RGATCY	2 cut(s)	41, 402
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	185, 578
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	5 cut(s)	205, 327, 352, 360, 390
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	32, 440, 494
NdeII	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
NlaIII	CATG	5 cut(s)	427, 452, 472, 496, 505
NlaIV	GGNNCC	2 cut(s)	43, 645
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	43, 645
PstNI	CAGNNNCTG	2 cut(s)	32, 316
PsuI	RGATCY	2 cut(s)	41, 402
PvuII	CAGCTG	1 cut(s)	654
RsaI	GTAC	3 cut(s)	62, 281, 645
RsaNI	GTAC	3 cut(s)	61, 280, 644
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	7 cut(s)	41, 84, 156, 228, 319, 323, 402
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	9 cut(s)	34, 60, 228, 249, 296, 318, 386, 593, 656
SfcI	CTRYAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	185, 578
SsiI	CCGC	1 cut(s)	356
SspI	AATATT	1 cut(s)	634
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	2 cut(s)	386, 593
TaqI	TCGA	3 cut(s)	183, 263, 322
TasI	AATT	2 cut(s)	185, 578
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	562
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	437, 490
TspRI	CASTG	1 cut(s)	562
XceI	RCATGY	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.