Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011198.1

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

17540 .. 18408

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011198.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgatgaagcagcaagaagcaagagatgttactaatgcagttgcagtagcagcagcagaagggaatcagcttgaagagcctaatctgatgtcaatattcaaggatctctatgaagctcttcagcagctgttcaacgaaaatagcacatataaacctgtcctcagaagcatcaagtctactttagactctttaccaccacttattgaagtgacagaaaacacaatctatctccgagtacacgaaagtttgaaggagatcctattggagcaggatcgcgagcagtatcgggagctgaaagagaaattgaaaaatgttagaatgcaaatgctagagggcgtcgagctcttccgcaacttctcaaaacatcatccatggaacttctgcaagaagtcccataacgcgtacaaattaattcaatgggatgaatctcttcaaagacatgtaaaaaaattaatggagaagaaacgtagcatcaaaagcaattatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

163

Amino Acids

19.43

Weight (kDa)

8.87

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	2 cut(s)	276, 401
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	3 cut(s)	111, 250, 279
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	237, 404
AflIII	ACRYGT	2 cut(s)	399, 439
AgsI	TTSAA	8 cut(s)	74, 100, 133, 206, 250, 307, 416, 434
AluBI	AGCT	5 cut(s)	70, 116, 127, 292, 343
AluI	AGCT	5 cut(s)	70, 116, 127, 292, 343
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	111, 250, 279
AlwNI	CAGNNNCTG	1 cut(s)	127
ApeKI	GCWGC	4 cut(s)	10, 50, 53, 124
AseI	ATTAAT	2 cut(s)	410, 452
Asp700I	GAANNNNTTC	2 cut(s)	117, 429
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	22, 62, 65, 136
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	4 cut(s)	11, 51, 54, 125
BlsI	GCNGC	4 cut(s)	12, 52, 55, 126
BmsI	GCATC	2 cut(s)	177, 480
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	2 cut(s)	367, 427
BseMII	CTCAG	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	22, 62, 65, 136
Bsh1236I	CGCG	2 cut(s)	276, 401
BsiHKAI	GWGCWC	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	103, 255, 271
Bsp19I	CCATGG	1 cut(s)	371
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	276, 401
BspPI	GGATC	3 cut(s)	111, 250, 279
BspQI	GCTCTTC	3 cut(s)	69, 123, 350
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	3 cut(s)	103, 255, 271
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	371
Bst6I	CTCTTC	4 cut(s)	69, 123, 350, 435
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	367, 427
BstFNI	CGCG	2 cut(s)	276, 401
BstKTI	GATC	3 cut(s)	106, 258, 274
BstMBI	GATC	3 cut(s)	103, 255, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 76, 477
BstNSI	RCATGY	1 cut(s)	443
BstUI	CGCG	2 cut(s)	276, 401
BstV1I	GCAGC	4 cut(s)	22, 62, 65, 136
BstX2I	RGATCY	2 cut(s)	103, 255
BstYI	RGATCY	2 cut(s)	103, 255
BtgI	CCRYGG	1 cut(s)	371
BtsCI	GGATG	2 cut(s)	367, 427
BtuMI	TCGCGA	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	127
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	236, 403
CviAII	CATG	2 cut(s)	372, 440
CviJI	RGCY	6 cut(s)	70, 79, 116, 127, 292, 343
CviKI_1	RGCY	6 cut(s)	70, 79, 116, 127, 292, 343
CviQI	GTAC	2 cut(s)	236, 403
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	3 cut(s)	105, 257, 273
DpnII	GATC	3 cut(s)	103, 255, 271
Eam1104I	CTCTTC	4 cut(s)	69, 123, 350, 435
EarI	CTCTTC	4 cut(s)	69, 123, 350, 435
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	375, 443
FaiI	YATR	6 cut(s)	111, 148, 150, 373, 396, 441
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	2 cut(s)	371, 439
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	4 cut(s)	11, 51, 54, 125
FokI	GGATG	2 cut(s)	354, 434
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	4 cut(s)	11, 51, 54, 125
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	4 cut(s)	11, 51, 54, 125
HgaI	GACGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	375, 443
HinfI	GANTC	3 cut(s)	64, 185, 425
Hpy166II	GTNNAC	2 cut(s)	177, 238
Hpy188I	TCNGA	4 cut(s)	87, 164, 233, 491
Hpy188III	TCNNGA	2 cut(s)	275, 287
Hpy8I	GTNNAC	2 cut(s)	177, 238
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	53, 244
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	38, 44, 322, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 76, 477
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	466
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	375, 443
Kzo9I	GATC	3 cut(s)	103, 255, 271
LguI	GCTCTTC	3 cut(s)	69, 123, 350
LmnI	GCTCC	2 cut(s)	265, 289
LpnPI	CCDG	2 cut(s)	168, 254
Lsp1109I	GCAGC	4 cut(s)	22, 62, 65, 136
LweI	GCATC	2 cut(s)	177, 480
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	2 cut(s)	28, 208
MalI	GATC	3 cut(s)	105, 257, 273
MboI	GATC	3 cut(s)	103, 255, 271
MboII	GAAGA	5 cut(s)	86, 110, 337, 422, 472
MflI	RGATCY	2 cut(s)	103, 255
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	5 cut(s)	302, 407, 411, 449, 481
MluI	ACGCGT	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	170, 325
MroXI	GAANNNNTTC	2 cut(s)	117, 429
MseI	TTAA	2 cut(s)	410, 452
MspA1I	CMGCKG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	324
MvnI	CGCG	2 cut(s)	276, 401
MwoI	GCNNNNNNNGC	3 cut(s)	50, 76, 477
NcoI	CCATGG	1 cut(s)	371
NdeII	GATC	3 cut(s)	103, 255, 271
NlaIII	CATG	2 cut(s)	375, 443
NmuCI	GTSAC	1 cut(s)	208
NruI	TCGCGA	1 cut(s)	276
NspI	RCATGY	1 cut(s)	443
PciI	ACATGT	1 cut(s)	439
PciSI	GCTCTTC	3 cut(s)	69, 123, 350
PctI	GAATGC	1 cut(s)	324
PdmI	GAANNNNTTC	2 cut(s)	117, 429
PfeI	GAWTC	2 cut(s)	64, 425
PkrI	GCNGC	4 cut(s)	12, 52, 55, 126
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	439
PshBI	ATTAAT	2 cut(s)	410, 452
Psp124BI	GAGCTC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	103, 255
PvuII	CAGCTG	1 cut(s)	127
RruI	TCGCGA	1 cut(s)	276
RsaI	GTAC	2 cut(s)	237, 404
RsaNI	GTAC	2 cut(s)	236, 403
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	3 cut(s)	69, 123, 350
SaqAI	TTAA	2 cut(s)	410, 452
SatI	GCNGC	4 cut(s)	11, 51, 54, 125
Sau3AI	GATC	3 cut(s)	103, 255, 271
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	7 cut(s)	72, 118, 129, 157, 294, 345, 469
SfaNI	GCATC	2 cut(s)	177, 480
Sse9I	AATT	5 cut(s)	302, 407, 411, 449, 481
SsiI	CCGC	1 cut(s)	349
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	371
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	1 cut(s)	339
TasI	AATT	5 cut(s)	302, 407, 411, 449, 481
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	64, 425
Tru1I	TTAA	2 cut(s)	410, 452
Tru9I	TTAA	2 cut(s)	410, 452
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	4 cut(s)	10, 50, 53, 124
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	20, 126, 438
VspI	ATTAAT	2 cut(s)	410, 452
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	117, 429
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.