Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

2077958 .. 2078269

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCCGACTTGGTCCTAGGGGCTGCTCTAGGAACAACATTTACAGTGCTGTATGATGCGGTTCGTGAAGCGACGGTGGGCAAGTTTAAGACGATTCAACCCCTACTTCGAGCTGTGGAATCTACACTAGCCTCTATACAACCACTTGTCATCAAGCAAATAGGAGATTACAACGTGAAACTGGAGCTCCCAAATGATGAAGTAGAAAAGCTCCAGAAACAGATGAGGGAAGGCGAAGAGCTCATATGCAGGTTTGTCGAAACTGCGTTGGTGGAATCGTATCAAGTCTCGTTACATAGTTCAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

4.91

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 87	1.1e-13	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AciI	CCGC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	5 cut(s)	113, 187, 211, 241, 305
AluI	AGCT	5 cut(s)	113, 187, 211, 241, 305
Alw21I	GWGCWC	2 cut(s)	189, 243
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	23
AspA2I	CCTAGG	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	13
AvrII	CCTAGG	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	189, 243
Bbv12I	GWGCWC	2 cut(s)	189, 243
BbvI	GCAGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	3 cut(s)	17, 29, 128
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	1 cut(s)	24
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	46
BpmI	CTGGAG	2 cut(s)	197, 203
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	189, 243
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	189, 243
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	5
BspMI	ACCTGC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	46, 76
Bst6I	CTCTTC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	13
CviJI	RGCY	8 cut(s)	5, 23, 113, 131, 187, 211, 241, 305
CviKI_1	RGCY	8 cut(s)	5, 23, 113, 131, 187, 211, 241, 305
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	2 cut(s)	187, 241
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	189, 243
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	2 cut(s)	187, 241
EcoICRI	GAGCTC	2 cut(s)	187, 241
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	2 cut(s)	189, 243
ErhI	CCWWGG	1 cut(s)	16
FaiI	YATR	5 cut(s)	54, 137, 245, 247, 297
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	24
FriOI	GRGCYC	2 cut(s)	189, 243
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	3 cut(s)	17, 29, 128
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	2 cut(s)	197, 203
HaeIII	GGCC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	94, 119, 275
Hpy188III	TCNNGA	2 cut(s)	65, 214
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	46, 76
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	3 cut(s)	184, 192, 216
LpnPI	CCDG	3 cut(s)	167, 227, 235
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	3 cut(s)	17, 29, 128
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	291
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	189, 243
MnlI	CCTC	2 cut(s)	142, 219
MseI	TTAA	1 cut(s)	87
NdeI	CATATG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	94, 119, 275
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	25
Psp124BI	GAGCTC	2 cut(s)	189, 243
PspPI	GGNCC	1 cut(s)	13
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
PsyI	GACNNNGTC	1 cut(s)	11
SacI	GAGCTC	2 cut(s)	189, 243
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	189, 243
SetI	ASST	7 cut(s)	115, 177, 189, 213, 243, 254, 307
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	13
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	3 cut(s)	17, 29, 128
SstI	GAGCTC	2 cut(s)	189, 243
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	46, 76
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	109, 258
TfiI	GAWTC	3 cut(s)	94, 119, 275
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 29, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.