Rh2CG175200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001601
Physical Location & Seq
Forward (+)
15989427 .. 15989765
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG175200.1

Sequence Viewer

Length: 339 bp
ATGGCTGCTGTGCTTGCTGGTGGAGCAGTGTTAGGGACAGTATTTTCAGAGCTGTACAAGGGCGTTCAGACACTGATCAGAACATCTAAGCATTTTAAAGACCTTGCCAAAAACATTAAATTGAAATTAGAATGCTTGCTACCACTGATCAAGCAGATTGAGGAACAAAACATGGAACTCGGTCGCTCGAACCAGTGTACAGAAAAATTTAAAATAGAAATAGTCGAGGGCCTAGAGCTTGTCCAAAATTGCTGTAAGGTTGGTCCATTGGAAATATCCAAACAGAGGAATTACATCAGAGAACTTCGTGAGTTGGATGGTTCACTTAAGAACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

112

Amino Acids

12.7

Weight (kDa)

8.7

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 5 - 111 7.6e-18 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 2 cut(s) 56, 199
AfiI CCNNNNNNNGG 1 cut(s) 285
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 2 cut(s) 52, 238
AluI AGCT 2 cut(s) 52, 238
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 229, 263
AvaII GGWCC 1 cut(s) 263
BccI CCATC 1 cut(s) 311
BclI TGATCA 2 cut(s) 75, 147
BfaI CTAG 1 cut(s) 233
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 229, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 193, 338
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 193, 338
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 231
Bsp1407I TGTACA 2 cut(s) 54, 197
Bsp143I GATC 2 cut(s) 75, 147
BspANI GGCC 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 326
BsrGI TGTACA 2 cut(s) 54, 197
BsrI ACTGG 2 cut(s) 193, 338
BssMI GATC 2 cut(s) 75, 147
Bst4CI ACNGT 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 326
BstAUI TGTACA 2 cut(s) 54, 197
BstC8I GCNNGC 2 cut(s) 15, 137
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 78, 150
BstMBI GATC 2 cut(s) 75, 147
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 33, 71, 143, 200
Cac8I GCNNGC 2 cut(s) 15, 137
CaiI CAGNNNCTG 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 229, 263
Csp6I GTAC 2 cut(s) 55, 198
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 5, 52, 231, 238
CviKI_1 RGCY 4 cut(s) 5, 52, 231, 238
CviQI GTAC 2 cut(s) 55, 198
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 77, 149
DpnII GATC 2 cut(s) 75, 147
DraI TTTAAA 2 cut(s) 97, 211
Eco47I GGWCC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 229
FaeI CATG 1 cut(s) 175
FaiI YATR 1 cut(s) 173
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 171
FbaI TGATCA 2 cut(s) 75, 147
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 198, 323
Hpy188I TCNGA 4 cut(s) 49, 69, 80, 299
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 2 cut(s) 198, 323
HpyCH4III ACNGT 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 175
Ksp22I TGATCA 2 cut(s) 75, 147
Kzo9I GATC 2 cut(s) 75, 147
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 3 cut(s) 3, 206, 319
MaeI CTAG 1 cut(s) 233
MalI GATC 2 cut(s) 77, 149
MboI GATC 2 cut(s) 75, 147
MluCI AATT 5 cut(s) 119, 125, 206, 247, 289
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 3 cut(s) 154, 220, 279
MseI TTAA 4 cut(s) 96, 117, 210, 327
MspCI CTTAAG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NdeII GATC 2 cut(s) 75, 147
NlaIII CATG 1 cut(s) 175
PctI GAATGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 7
PspPI GGNCC 2 cut(s) 229, 263
PstNI CAGNNNCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 56, 199
RsaNI GTAC 2 cut(s) 55, 198
SaqAI TTAA 4 cut(s) 96, 117, 210, 327
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 75, 147
Sau96I GGNCC 2 cut(s) 229, 263
SetI ASST 4 cut(s) 54, 105, 240, 261
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 5 cut(s) 119, 125, 206, 247, 289
SspMI CTAG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 188, 225
TaqII GACCGA 1 cut(s) 170
TasI AATT 5 cut(s) 119, 125, 206, 247, 289
TatI WGTACW 2 cut(s) 54, 197
Tru1I TTAA 4 cut(s) 96, 117, 210, 327
Tru9I TTAA 4 cut(s) 96, 117, 210, 327
TscAI CASTG 4 cut(s) 33, 78, 150, 200
TseI GCWGC 1 cut(s) 5
TspRI CASTG 4 cut(s) 33, 78, 150, 200
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 206
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.