Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

2083686 .. 2085342

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCGACTTGGTCCTAGGGGCTGCTCTAGGAACAACATTTACAGTGCTGTATGATGCGGTTCGTGAAGCGACGGTGGGCAAGTTTAAGACGATTCAACCCCTACTTCGAGCTGTGGAATCTACACTAGCCTCTATACAACCACTTGTCATCAAGCAAATAGGAGATTACAACGTGAAACTGGAGCTCCCAAATGATGAAGTAGAAAAGCTCCAGAAACAGATGAGGGAAGGCGAAGAGCTCATATGCAGGTTGTCGAAACTGCGTTGGTGGAATCGTATCAAGTCTCGTTACATAGTTCAGCTTGTTGAATTGGATGCGTCTCTTAAAGGGCTGTTGACACATATAGTGATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTTGTGGTCAAGCAAACTGCTAAACAATTTGTTCAGTTCCAAGAGTTCAATGAAAGACTGTTAAGAGAACGGACATTACTGCAAGAAGATGCCAGAGGTTTGCAGGAGAAGTTTGTTTTGCAACTGCAAAACAACGGGGAACAGCTGCTTCAATTGCAACGAGTGATAGTGGACATGATGATGGAGCAAGAAGTAAGGGAAGTGACTGATAGCGAAACAGGGGATATGGTTGGAGTGGCTGCTCTGGTGACACTATTTAAGGTGCTATTTGGAAACGTTCAGCACCTGTTCAAACAGAATGTCACATATAAACCCGTCCTCAGAAATATCAAATCGACTCTAGACTCTTTAGGACCAGTGATCGAAGTGATAGAGGAGACCAATCGGTTCTTGAGCTATAGCGAGAAGAGGCAGATCCATTGTCTTGCAATAGAAATGCGAGCTGGTGTAGAGCTCTTTCGTAGGTGCTCGAAGATAGGTACTTGGAACATCTACAAAAACTTGTCATACAACAGCAAACTTATTCAATGGGACGAGTCTCTACAAAGAGAGATAGATAGACTGATTGCAAACCTAGATGATCAGCATTACGAAAAAGCAAGTAGTGCACCTTCCTGTTTCGGGCCAAAACACTACAATGATCCTTCTCTGATAACCAAATTAATTTTGAGAAAAAATGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

357

Amino Acids

41.13

Weight (kDa)

8.21

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 135	1.2e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	203 - 315	4.3e-16	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AciI	CCGC	1 cut(s)	59
AclI	AACGTT	1 cut(s)	660
AclWI	GGATC	2 cut(s)	793, 1019
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	865
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AgsI	TTSAA	6 cut(s)	98, 311, 433, 536, 676, 911
AluBI	AGCT	9 cut(s)	113, 187, 211, 241, 304, 529, 780, 827, 838
AluI	AGCT	9 cut(s)	113, 187, 211, 241, 304, 529, 780, 827, 838
Alw21I	GWGCWC	5 cut(s)	189, 243, 840, 854, 994
Alw26I	GTCTC	4 cut(s)	291, 327, 755, 927
Alw44I	GTGCAC	1 cut(s)	990
AlwI	GGATC	2 cut(s)	793, 1019
AlwNI	CAGNNNCTG	1 cut(s)	670
AoxI	GGCC	2 cut(s)	3, 1007
ApaLI	GTGCAC	1 cut(s)	990
ApeKI	GCWGC	4 cut(s)	23, 355, 529, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
AseI	ATTAAT	1 cut(s)	1046
AspA2I	CCTAGG	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	13, 737, 1007
AsuHPI	GGTGA	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	13, 737
AvrII	CCTAGG	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	994
BanII	GRGCYC	3 cut(s)	189, 243, 840
BarI	GAAGNNNNNNTAC	2 cut(s)	979, 1011
Bbv12I	GWGCWC	5 cut(s)	189, 243, 840, 854, 994
BbvI	GCAGC	4 cut(s)	10, 367, 516, 610
BccI	CCATC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	4 cut(s)	291, 327, 755, 927
BfaI	CTAG	5 cut(s)	17, 29, 128, 725, 959
BfmI	CTRYAG	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	24, 356, 530, 624
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	4 cut(s)	25, 357, 531, 625
Bme18I	GGWCC	2 cut(s)	13, 737
BmgT120I	GGNCC	3 cut(s)	13, 737, 1007
BmsI	GCATC	4 cut(s)	46, 307, 342, 463
BpmI	CTGGAG	2 cut(s)	197, 203
BpuEI	CTTGAG	1 cut(s)	796
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	2 cut(s)	186, 740
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	2 cut(s)	186, 740
BseRI	GAGGAG	1 cut(s)	773
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	4 cut(s)	10, 367, 516, 610
BshFI	GGCC	2 cut(s)	5, 1009
BsiHKAI	GWGCWC	5 cut(s)	189, 243, 840, 854, 994
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	4 cut(s)	291, 327, 755, 927
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	2 cut(s)	5, 1009
Bso31I	GGTCTC	1 cut(s)	755
Bsp1286I	GDGCHC	5 cut(s)	189, 243, 840, 854, 994
Bsp143I	GATC	4 cut(s)	744, 798, 964, 1024
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	5, 1009
BspCNI	CTCAG	1 cut(s)	717
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	793, 1019
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	186, 740
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	4 cut(s)	744, 798, 964, 1024
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	46, 76, 444
Bst6I	CTCTTC	2 cut(s)	231, 785
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	2 cut(s)	360, 825
BstDEI	CTNAG	1 cut(s)	704
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	4 cut(s)	747, 801, 967, 1027
BstMAI	GTCTC	4 cut(s)	291, 327, 755, 927
BstMBI	GATC	4 cut(s)	744, 798, 964, 1024
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 989
BstSFI	CTRYAG	1 cut(s)	781
BstSLI	GKGCMC	1 cut(s)	994
BstV1I	GCAGC	4 cut(s)	10, 367, 516, 610
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	5, 1009
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	51, 747
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	360, 825
CaiI	CAGNNNCTG	1 cut(s)	670
Cfr13I	GGNCC	3 cut(s)	13, 737, 1007
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	864
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	1 cut(s)	864
DdeI	CTNAG	1 cut(s)	704
DpnI	GATC	4 cut(s)	746, 800, 966, 1026
DpnII	GATC	4 cut(s)	744, 798, 964, 1024
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	231, 785
EarI	CTCTTC	2 cut(s)	231, 785
Ecl136II	GAGCTC	3 cut(s)	187, 241, 838
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	3 cut(s)	189, 243, 840
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	13, 737
Eco53kI	GAGCTC	3 cut(s)	187, 241, 838
EcoICRI	GAGCTC	3 cut(s)	187, 241, 838
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	3 cut(s)	189, 243, 840
ErhI	CCWWGG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	1 cut(s)	562
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	1 cut(s)	558
FauNDI	CATATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	4 cut(s)	24, 356, 530, 624
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	3 cut(s)	189, 243, 840
Fsp4HI	GCNGC	4 cut(s)	24, 356, 530, 624
FspBI	CTAG	5 cut(s)	17, 29, 128, 725, 959
GluI	GCNGC	4 cut(s)	24, 356, 530, 624
GsuI	CTGGAG	2 cut(s)	197, 203
HaeIII	GGCC	2 cut(s)	5, 1009
HgaI	GACGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	6 cut(s)	94, 119, 274, 721, 728, 920
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	3 cut(s)	339, 556, 992
Hpy188I	TCNGA	2 cut(s)	707, 1035
Hpy188III	TCNNGA	4 cut(s)	65, 214, 725, 775
Hpy8I	GTNNAC	3 cut(s)	339, 556, 992
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	224, 1005, 1038
HpyCH4III	ACNGT	3 cut(s)	46, 76, 444
HpyCH4IV	ACGT	2 cut(s)	174, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 989
HpyF3I	CTNAG	1 cut(s)	704
HpySE526I	ACGT	2 cut(s)	174, 660
Hsp92II	CATG	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	744, 798, 964, 1024
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	4 cut(s)	184, 192, 216, 568
Lsp1109I	GCAGC	4 cut(s)	10, 367, 516, 610
LweI	GCATC	4 cut(s)	46, 307, 342, 463
MaeI	CTAG	5 cut(s)	17, 29, 128, 725, 959
MaeII	ACGT	2 cut(s)	174, 660
MaeIII	GTNAC	4 cut(s)	290, 586, 631, 685
MalI	GATC	4 cut(s)	746, 800, 966, 1026
MboI	GATC	4 cut(s)	744, 798, 964, 1024
MboII	GAAGA	4 cut(s)	248, 482, 802, 868
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	5 cut(s)	189, 243, 840, 854, 994
MluCI	AATT	5 cut(s)	311, 410, 536, 1043, 1047
MlyI	GAGTC	3 cut(s)	715, 722, 929
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	6 cut(s)	142, 219, 473, 713, 751, 786
MseI	TTAA	6 cut(s)	87, 327, 372, 446, 642, 1046
MslI	CAYNNNNRTG	2 cut(s)	563, 1020
MspA1I	CMGCKG	1 cut(s)	529
MunI	CAATTG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	538, 989
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	4 cut(s)	744, 798, 964, 1024
NlaIII	CATG	1 cut(s)	562
NmuCI	GTSAC	3 cut(s)	586, 631, 685
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	94, 119, 274
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	25, 357, 531, 625
PleI	GAGTC	3 cut(s)	715, 722, 928
PpsI	GAGTC	3 cut(s)	715, 722, 928
PshBI	ATTAAT	1 cut(s)	1046
Psp124BI	GAGCTC	3 cut(s)	189, 243, 840
Psp1406I	AACGTT	1 cut(s)	660
PspPI	GGNCC	3 cut(s)	13, 737, 1007
PsrI	GAACNNNNNNTAC	4 cut(s)	25, 57, 444, 476
PstNI	CAGNNNCTG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	798
PsyI	GACNNNGTC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	865
RsaNI	GTAC	1 cut(s)	864
RseI	CAYNNNNRTG	2 cut(s)	563, 1020
SacI	GAGCTC	3 cut(s)	189, 243, 840
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	6 cut(s)	87, 327, 372, 446, 642, 1046
SatI	GCNGC	4 cut(s)	24, 356, 530, 624
Sau3AI	GATC	4 cut(s)	744, 798, 964, 1024
Sau96I	GGNCC	3 cut(s)	13, 737, 1007
SchI	GAGTC	3 cut(s)	715, 722, 929
SduI	GDGCHC	5 cut(s)	189, 243, 840, 854, 994
SfaNI	GCATC	4 cut(s)	46, 307, 342, 463
SfcI	CTRYAG	1 cut(s)	781
SinI	GGWCC	2 cut(s)	13, 737
SmiMI	CAYNNNNRTG	2 cut(s)	563, 1020
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	5 cut(s)	311, 410, 536, 1043, 1047
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	5 cut(s)	17, 29, 128, 725, 959
SstI	GAGCTC	3 cut(s)	189, 243, 840
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	46, 76, 444
TaiI	ACGT	2 cut(s)	177, 663
TaqI	TCGA	6 cut(s)	109, 257, 719, 747, 854, 1065
TasI	AATT	5 cut(s)	311, 410, 536, 1043, 1047
TfiI	GAWTC	3 cut(s)	94, 119, 274
Tru1I	TTAA	6 cut(s)	87, 327, 372, 446, 642, 1046
Tru9I	TTAA	6 cut(s)	87, 327, 372, 446, 642, 1046
TscAI	CASTG	2 cut(s)	51, 747
TseFI	GTSAC	3 cut(s)	586, 631, 685
TseI	GCWGC	4 cut(s)	23, 355, 529, 623
Tsp45I	GTSAC	3 cut(s)	586, 631, 685
TspDTI	ATGAA	2 cut(s)	213, 450
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	2 cut(s)	51, 747
Tth111I	GACNNNGTC	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	990
VpaK11BI	GGWCC	2 cut(s)	13, 737
VspI	ATTAAT	1 cut(s)	1046
XbaI	TCTAGA	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	5 cut(s)	17, 29, 128, 725, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.