Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8128798.1

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

6 .. 410

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8128798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgtcaatattcaaggatctctatgaagctcttcagcagctgttcaacgaaaatagcacatataaacctgtcctcagaagcatcaagtctactttagactctttaccaccacttattgaagtgacagaaaacacaatctatctccgagtacacgaaagtttgaaggagatcctattggagcaggatcgcgagcagtatcgggagctgaaagagaaattgaaaaatgttagaatgcaaatgctagagggcgtcgagctcttccgcaacttctcaaaacatcatccatggaacttctgcaagaagtcccataacgcgtacaaattaattcaatgggatgaatctcttcaaagacatgtaaaaaaattaatggagaagaaacgtagcatcaaaagcaattatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

134

Amino Acids

16.32

Weight (kDa)

9.38

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	2 cut(s)	189, 314
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	3 cut(s)	24, 163, 192
AcuI	CTGAAG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	150, 317
AflIII	ACRYGT	2 cut(s)	312, 352
AgsI	TTSAA	7 cut(s)	13, 46, 119, 163, 220, 329, 347
AluBI	AGCT	4 cut(s)	29, 40, 205, 256
AluI	AGCT	4 cut(s)	29, 40, 205, 256
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	24, 163, 192
AlwNI	CAGNNNCTG	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	37
AseI	ATTAAT	2 cut(s)	323, 365
Asp700I	GAANNNNTTC	2 cut(s)	30, 342
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	90, 393
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	280, 340
BseMII	CTCAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	189, 314
BsiHKAI	GWGCWC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	16, 168, 184
Bsp19I	CCATGG	1 cut(s)	284
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	2 cut(s)	189, 314
BspPI	GGATC	3 cut(s)	24, 163, 192
BspQI	GCTCTTC	2 cut(s)	36, 263
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	3 cut(s)	16, 168, 184
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	284
Bst6I	CTCTTC	3 cut(s)	36, 263, 348
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	280, 340
BstFNI	CGCG	2 cut(s)	189, 314
BstKTI	GATC	3 cut(s)	19, 171, 187
BstMBI	GATC	3 cut(s)	16, 168, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	356
BstUI	CGCG	2 cut(s)	189, 314
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	16, 168
BstYI	RGATCY	2 cut(s)	16, 168
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	280, 340
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	40
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	149, 316
CviAII	CATG	2 cut(s)	285, 353
CviJI	RGCY	4 cut(s)	29, 40, 205, 256
CviKI_1	RGCY	4 cut(s)	29, 40, 205, 256
CviQI	GTAC	2 cut(s)	149, 316
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	18, 170, 186
DpnII	GATC	3 cut(s)	16, 168, 184
Eam1104I	CTCTTC	3 cut(s)	36, 263, 348
EarI	CTCTTC	3 cut(s)	36, 263, 348
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	288, 356
FaiI	YATR	6 cut(s)	24, 61, 63, 286, 309, 354
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	2 cut(s)	284, 352
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	2 cut(s)	267, 347
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	38
HgaI	GACGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	288, 356
HinfI	GANTC	2 cut(s)	98, 338
Hpy166II	GTNNAC	2 cut(s)	90, 151
Hpy188I	TCNGA	3 cut(s)	77, 146, 404
Hpy188III	TCNNGA	2 cut(s)	188, 200
Hpy8I	GTNNAC	2 cut(s)	90, 151
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	235, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	288, 356
Kzo9I	GATC	3 cut(s)	16, 168, 184
LguI	GCTCTTC	2 cut(s)	36, 263
LmnI	GCTCC	2 cut(s)	178, 202
LpnPI	CCDG	2 cut(s)	81, 167
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	90, 393
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	18, 170, 186
MboI	GATC	3 cut(s)	16, 168, 184
MboII	GAAGA	4 cut(s)	23, 250, 335, 385
MflI	RGATCY	2 cut(s)	16, 168
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	5 cut(s)	215, 320, 324, 362, 394
MluI	ACGCGT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	2 cut(s)	83, 238
MroXI	GAANNNNTTC	2 cut(s)	30, 342
MseI	TTAA	2 cut(s)	323, 365
MspA1I	CMGCKG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	237
MvnI	CGCG	2 cut(s)	189, 314
MwoI	GCNNNNNNNGC	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	3 cut(s)	16, 168, 184
NlaIII	CATG	2 cut(s)	288, 356
NmuCI	GTSAC	1 cut(s)	121
NruI	TCGCGA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	356
PciI	ACATGT	1 cut(s)	352
PciSI	GCTCTTC	2 cut(s)	36, 263
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	30, 342
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	352
PshBI	ATTAAT	2 cut(s)	323, 365
Psp124BI	GAGCTC	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	16, 168
PvuII	CAGCTG	1 cut(s)	40
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	2 cut(s)	150, 317
RsaNI	GTAC	2 cut(s)	149, 316
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	2 cut(s)	36, 263
SaqAI	TTAA	2 cut(s)	323, 365
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	16, 168, 184
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	6 cut(s)	31, 42, 70, 207, 258, 382
SfaNI	GCATC	2 cut(s)	90, 393
Sse9I	AATT	5 cut(s)	215, 320, 324, 362, 394
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	252
TasI	AATT	5 cut(s)	215, 320, 324, 362, 394
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	323, 365
Tru9I	TTAA	2 cut(s)	323, 365
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	39, 351
VspI	ATTAAT	2 cut(s)	323, 365
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	30, 342
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.