Rmu_sc0003017.1_g000006
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003017.1
Physical Location & Seq
Reverse (-)
24058 .. 31337
7280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003017.1_g000006.1.cds

Sequence Viewer

Length: 1308 bp
atggccgagttagtcgcaggggctggtttaggaacagtgttcaccatgctctacgatgtggttaaggaatgcttagtagtgggcaagtttatgcagtttaaacccctcctcggagctctcaaatccaccttagactccattcaaccactcatcatccaaaagataggagaacacaacctgaaactgggtctcccaaatgatgaaatacaaaatctcgagaaacaaatgagggaggcggaaaagcttgttgtcaagctctccaagcttcggatgtggaaccgcatcaagtctcgttacacagaccaacttgtggagttggatggaactctgaaacggctcttgaaacaggtgttgatgcagcaagcgagggacgttaaggagaacttgatggtggcaaaggaaactgcgcaacaacttgttgagatgcaagagttcaatgagagactgctgaaggaacggacgctgcagcaggaagaagcgatagatctgcagcacaagtttgtttcggcactccaaaacaacgctaaacagcttgttcatttgcaaggagtgatagaagaaatgatgaagcagcaggaagcaagggaagtcactgatgccggaacagatcacttttgcaaattttcaatgaaatcggtgatcgttaaggcatttaaaatggcgatttcagattacaagtatgaacggttcaagtttgacagagttgggtatgatctagagaaactattcaatctgttatacgaaagcgttcagcggctgatggtcgagcatgtcacatataaacccatgctccagagcatcgaatgcgcccttgactccttacaaccactggtcaaggtgacaaagaaacctagtgggctgttgttggatcgcttgaaggaggacctagaagttctgagaatacaaatgcaaaacggcatggagctattacgcaagtgcgcaaagataggtacatggaacatctacaaaaggttcaaatacgccaacaagcttattcaatgggaagaatctctacgaagacagatagatatattagatgccgggatcgctcggtttggcggtgacccgcgatcccgatcgcccgacccgcaacgcggtacgatcgtgatccagatcggtaactccagcgatcccattgtctcagcgtatctggtctgtgtttcagtcactgaatcgatcctctcgaagcctagaatccaatgcacagaggcgcggagtactgcaccgtcgcaacggattgcgcagtcaagtttgattcttgaagacctccatctttgtcagttcatcggcggtgttcttgaatcttga

Protein Analysis

435

Amino Acids

49.82

Weight (kDa)

8.85

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 408, 940, 1242
AccB7I CCANNNNNTGG 1 cut(s) 310
AccII CGCG 3 cut(s) 1069, 1095, 1213
AciI CCGC 9 cut(s) 236, 280, 754, 1059, 1067, 1088, 1095, 1213, 1290
AclWI GGATC 6 cut(s) 876, 1052, 1065, 1102, 1124, 1171
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 3 cut(s) 952, 1099, 1219
AfiI CCNNNNNNNGG 5 cut(s) 110, 184, 267, 310, 1094
AluBI AGCT 7 cut(s) 116, 244, 256, 265, 532, 925, 991
AluI AGCT 7 cut(s) 116, 244, 256, 265, 532, 925, 991
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 4 cut(s) 194, 294, 436, 1144
AlwI GGATC 6 cut(s) 876, 1052, 1065, 1102, 1124, 1171
AlwNI CAGNNNCTG 3 cut(s) 23, 757, 1169
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 358, 463, 466, 490, 571
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 2 cut(s) 725, 747
AspLEI GCGC 5 cut(s) 409, 809, 941, 1213, 1243
AspS9I GGNCC 1 cut(s) 883
AsuC2I CCSGG 1 cut(s) 1042
AsuHPI GGTGA 4 cut(s) 34, 649, 850, 1073
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 883
BaeI ACNNNNGTAYC 2 cut(s) 1089, 1122
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 996, 1028
BbsI GAAGAC 2 cut(s) 1024, 1269
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 370, 450, 478, 502, 583
BccI CCATC 4 cut(s) 314, 382, 754, 1278
BceAI ACGGC 2 cut(s) 350, 931
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BcnI CCSGG 1 cut(s) 1042
BcoDI GTCTC 4 cut(s) 194, 294, 436, 1144
BfaI CTAG 4 cut(s) 716, 852, 887, 1191
BfmI CTRYAG 2 cut(s) 464, 488
BglII AGATCT 1 cut(s) 484
BisI GCNGC 6 cut(s) 359, 464, 467, 491, 572, 755
BlsI GCNGC 6 cut(s) 360, 465, 468, 492, 573, 756
BmcAI AGTACT 1 cut(s) 1219
Bme1390I CCNGG 1 cut(s) 1042
Bme18I GGWCC 1 cut(s) 883
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 1042
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 6 cut(s) 291, 345, 414, 586, 807, 1027
BmuI ACTGGG 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 1024, 1269
BpmI CTGGAG 2 cut(s) 776, 1108
BpuMI CCSGG 1 cut(s) 1042
Bsa29I ATCGAT 1 cut(s) 1175
BsaBI GATNNNNATC 3 cut(s) 1075, 1106, 1112
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 774, 804
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 184, 267, 310, 1094
Bse1I ACTGG 2 cut(s) 189, 834
Bse8I GATNNNNATC 3 cut(s) 1075, 1106, 1112
BseCI ATCGAT 1 cut(s) 1175
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 153, 276, 325
BseJI GATNNNNATC 3 cut(s) 1075, 1106, 1112
BseLI CCNNNNNNNGG 5 cut(s) 110, 184, 267, 310, 1094
BseMII CTCAG 2 cut(s) 887, 1155
BseNI ACTGG 2 cut(s) 189, 834
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 5 cut(s) 370, 450, 478, 502, 583
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 3 cut(s) 1069, 1095, 1213
Bsh1285I CGRYCG 2 cut(s) 1079, 1104
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 1175
BsiEI CGRYCG 2 cut(s) 1079, 1104
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 600, 1041
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 5 cut(s) 110, 184, 267, 310, 1094
BsmAI GTCTC 4 cut(s) 194, 294, 436, 1144
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 2 cut(s) 74, 809
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 118
BspACI CCGC 9 cut(s) 236, 280, 754, 1059, 1067, 1088, 1095, 1213, 1290
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 888, 1154
BspDI ATCGAT 1 cut(s) 1175
BspFNI CGCG 3 cut(s) 1069, 1095, 1213
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 2 cut(s) 468, 492
BspPI GGATC 6 cut(s) 876, 1052, 1065, 1102, 1124, 1171
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 2 cut(s) 189, 834
BssECI CCNNGG 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 37, 687, 1227
BstAPI GCANNNNNTGC 1 cut(s) 804
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 4 cut(s) 73, 130, 896, 1141
BstEII GGTNACC 1 cut(s) 1061
BstF5I GGATG 3 cut(s) 153, 276, 325
BstFNI CGCG 3 cut(s) 1069, 1095, 1213
BstHHI GCGC 5 cut(s) 409, 809, 941, 1213, 1243
BstMAI GTCTC 4 cut(s) 194, 294, 436, 1144
BstMCI CGRYCG 2 cut(s) 1079, 1104
BstMWI GCNNNNNNNGC 4 cut(s) 262, 804, 1046, 1087
BstNSI RCATGY 1 cut(s) 773
BstPI GGTNACC 1 cut(s) 1061
BstSCI CCNGG 1 cut(s) 1040
BstSFI CTRYAG 2 cut(s) 464, 488
BstUI CGCG 3 cut(s) 1069, 1095, 1213
BstV1I GCAGC 5 cut(s) 370, 450, 478, 502, 583
BstV2I GAAGAC 2 cut(s) 1024, 1269
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 1175
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 1175
BtsCI GGATG 3 cut(s) 153, 276, 325
BtsIMutI CAGTG 4 cut(s) 42, 591, 827, 1167
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 3 cut(s) 23, 757, 1169
CfoI GCGC 5 cut(s) 409, 809, 941, 1213, 1243
Cfr13I GGNCC 1 cut(s) 883
ClaI ATCGAT 1 cut(s) 1175
CseI GACGC 1 cut(s) 469
Csp6I GTAC 3 cut(s) 951, 1098, 1218
CviAII CATG 5 cut(s) 46, 770, 787, 919, 954
CviQI GTAC 3 cut(s) 951, 1098, 1218
DdeI CTNAG 4 cut(s) 73, 130, 896, 1141
DraI TTTAAA 2 cut(s) 100, 655
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 1061
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 883
EcoO65I GGTNACC 1 cut(s) 1061
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 5 cut(s) 49, 773, 790, 922, 957
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 368, 400
FaqI GGGAC 1 cut(s) 383
FatI CATG 5 cut(s) 45, 769, 786, 918, 953
FauI CCCGC 2 cut(s) 1074, 1095
Fnu4HI GCNGC 6 cut(s) 359, 464, 467, 491, 572, 755
FokI GGATG 3 cut(s) 140, 283, 332
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 6 cut(s) 359, 464, 467, 491, 572, 755
FspBI CTAG 4 cut(s) 716, 852, 887, 1191
FspI TGCGCA 3 cut(s) 408, 940, 1242
GlaI GCGC 5 cut(s) 408, 808, 940, 1212, 1242
GluI GCNGC 6 cut(s) 359, 464, 467, 491, 572, 755
GsuI CTGGAG 2 cut(s) 776, 1108
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 600, 1041
HgaI GACGC 1 cut(s) 469
HhaI GCGC 5 cut(s) 409, 809, 941, 1213, 1243
Hin1II CATG 5 cut(s) 49, 773, 790, 922, 957
Hin6I GCGC 5 cut(s) 407, 807, 939, 1211, 1241
HinP1I GCGC 5 cut(s) 407, 807, 939, 1211, 1241
HindIII AAGCTT 3 cut(s) 242, 263, 989
HinfI GANTC 7 cut(s) 134, 815, 1007, 1172, 1194, 1255, 1301
HpaII CCGG 2 cut(s) 600, 1041
HphI GGTGA 4 cut(s) 34, 649, 850, 1073
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 5 cut(s) 113, 270, 330, 670, 897
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 1231
HpyAV CCTTC 2 cut(s) 445, 871
HpyCH4III ACNGT 3 cut(s) 37, 687, 1227
HpyCH4IV ACGT 1 cut(s) 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 804, 1046, 1087
HpyF3I CTNAG 4 cut(s) 73, 130, 896, 1141
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 5 cut(s) 49, 773, 790, 922, 957
HspAI GCGC 5 cut(s) 407, 807, 939, 1211, 1241
LmnI GCTCC 3 cut(s) 113, 795, 922
Lsp1109I GCAGC 5 cut(s) 370, 450, 478, 502, 583
LweI GCATC 6 cut(s) 291, 345, 414, 586, 807, 1027
MaeI CTAG 4 cut(s) 716, 852, 887, 1191
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 7 cut(s) 293, 589, 772, 838, 1061, 1118, 1165
MboII GAAGA 5 cut(s) 485, 569, 1016, 1029, 1274
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 620
MlyI GAGTC 2 cut(s) 128, 809
MmeI TCCRAC 2 cut(s) 297, 846
MnlI CCTC 9 cut(s) 116, 119, 222, 226, 360, 874, 1190, 1201, 1277
MroXI GAANNNNTTC 2 cut(s) 725, 747
MseI TTAA 5 cut(s) 63, 99, 375, 645, 654
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 2 cut(s) 600, 1041
MspR9I CCNGG 1 cut(s) 1042
MssI GTTTAAAC 1 cut(s) 100
Mva1269I GAATGC 2 cut(s) 74, 809
MvnI CGCG 3 cut(s) 1069, 1095, 1213
MwoI GCNNNNNNNGC 4 cut(s) 262, 804, 1046, 1087
NciI CCSGG 1 cut(s) 1042
NlaIII CATG 5 cut(s) 49, 773, 790, 922, 957
NlaIV GGNNCC 1 cut(s) 278
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 5 cut(s) 589, 772, 838, 1061, 1165
NsbI TGCGCA 3 cut(s) 408, 940, 1242
NspI RCATGY 1 cut(s) 773
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 1181
PctI GAATGC 2 cut(s) 74, 809
PdmI GAANNNNTTC 2 cut(s) 725, 747
PfeI GAWTC 5 cut(s) 1007, 1172, 1194, 1255, 1301
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 6 cut(s) 360, 465, 468, 492, 573, 756
Ple19I CGATCG 2 cut(s) 1079, 1104
PleI GAGTC 2 cut(s) 128, 809
PmeI GTTTAAAC 1 cut(s) 100
PpsI GAGTC 2 cut(s) 128, 809
PpuMI RGGWCCY 1 cut(s) 883
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 883
PspEI GGTNACC 1 cut(s) 1061
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 883
PspPPI RGGWCCY 1 cut(s) 883
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
PstI CTGCAG 2 cut(s) 468, 492
PstNI CAGNNNCTG 3 cut(s) 23, 757, 1169
PsuI RGATCY 1 cut(s) 484
PvuI CGATCG 2 cut(s) 1079, 1104
RsaI GTAC 3 cut(s) 952, 1099, 1219
RsaNI GTAC 3 cut(s) 951, 1098, 1218
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 5 cut(s) 63, 99, 375, 645, 654
SatI GCNGC 6 cut(s) 359, 464, 467, 491, 572, 755
Sau96I GGNCC 1 cut(s) 883
ScaI AGTACT 1 cut(s) 1219
SchI GAGTC 2 cut(s) 128, 809
ScrFI CCNGG 1 cut(s) 1042
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 6 cut(s) 291, 345, 414, 586, 807, 1027
SfcI CTRYAG 2 cut(s) 464, 488
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 883
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 620
SsiI CCGC 9 cut(s) 236, 280, 754, 1059, 1067, 1088, 1095, 1213, 1290
SspMI CTAG 4 cut(s) 716, 852, 887, 1191
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 1040
TaaI ACNGT 3 cut(s) 37, 687, 1227
TaiI ACGT 1 cut(s) 375
TaqI TCGA 5 cut(s) 216, 765, 801, 1175, 1184
TasI AATT 1 cut(s) 620
TatI WGTACW 1 cut(s) 1217
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 5 cut(s) 1007, 1172, 1194, 1255, 1301
Tru1I TTAA 5 cut(s) 63, 99, 375, 645, 654
Tru9I TTAA 5 cut(s) 63, 99, 375, 645, 654
TscAI CASTG 4 cut(s) 42, 598, 834, 1174
TseFI GTSAC 5 cut(s) 589, 772, 838, 1061, 1165
TseI GCWGC 5 cut(s) 358, 463, 466, 490, 571
Tsp45I GTSAC 5 cut(s) 589, 772, 838, 1061, 1165
TspDTI ATGAA 6 cut(s) 216, 527, 581, 644, 696, 1273
TspGWI ACGGA 2 cut(s) 472, 1249
TspRI CASTG 4 cut(s) 42, 598, 834, 1174
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 883
XapI RAATTY 1 cut(s) 620
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 725, 747
XspI CTAG 4 cut(s) 716, 852, 887, 1191
ZrmI AGTACT 1 cut(s) 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.