Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

14574030 .. 14576602

Gene Structure 2573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTTATGGTAGGGGAGTTTCTAGGCGGGGCTGCTCTCGGAGCAGCATTCGGGCTGCTGTTTGATGTGGTTAAGGAAGCGATTGGTAAGTCTACAACGTTTAATTCCCTCCTCAAGAACATCAAATCCACTCTAGACTTTTTAAATCCGGTGATCGAAAAGATAGCAGAGCAGAACATGGAATTGGGTCTCCCAGAGGAGGAGATAAGGTATCTCATACAACAAATGGAGGAGGGCGTAGAGCTCGTTCGTAGGTCATTAAAGGTTAGTAAGTGGAACTGCATGAAGTATCACTACACGGACCAACTTGTGGAACTAGATGGGTCTTTGAGAAGACTGCTTGATGTATTGAAGGTGCAAGGAGTGAGGGATGTGAAGGAGACTCTGGTTTTGGCAAGGAAAAACCATGACCAACTTGTTGAATCGGCAAGGGATGGGAAGGAGACCTTGGATTTGGCGAGGAAAAATGGTGACCAACTTGTTGAATCGGCAAGGGATGGCAAGGAGACCTTGGATTTGGCGAGGAAAATAAACATGTTGGTCAAGCGAATTGAACGGAAGTCAAGAAATCAGACCAGGAATAGAGTTTCAAGCGCAAACAAAAGGGGAGGAAGAAGTCGATTTTCGGAGGCAGCAAGTTCAAGGATAAATGAGTCGCATACTGAGGGCCAAGTTTTAGAGACATCCAACTCCAGATTTTTCAGTTTCAAAGAGTTGAAGACTGCTTGTAGGAATTTTCGGCCAGAAGGATTACTTGGTGAGGGAAGTTTTGGAAAGGTTTTCAAGGGTTGGGTGGATGAGAAGACGCTTGTTCCTTCAAATGTTGGCACCGGAATGATCATTGCTGTTAAGAAATGGAAGCCAGAAAGCTTCCTAGGCCTTGAAGAGTGGAAGATAAATGGCCAATATTCCTCCAAGGAAGCATTACAGACAGCAAAGGTTACCCTAAAATGCCTAGCATCAGATCCTAAAGGTCGTCCTTCGATGAAAGAAGTTGTGGATGCATTGGAGCAGATTCAGGCAATCAAGGAAAACTCAAAACAAACAGAACTTACCCCAACTACAAAATCTACTCCAAGTTCTCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

363

Amino Acids

40.67

Weight (kDa)

9.33

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 138	2.8e-28	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	27
AclI	AACGTT	1 cut(s)	98
AclWI	GGATC	1 cut(s)	959
AcoI	YGGCCR	2 cut(s)	740, 901
AcsI	RAATTY	1 cut(s)	733
AfiI	CCNNNNNNNGG	2 cut(s)	199, 310
AflIII	ACRYGT	1 cut(s)	534
AjnI	CCWGG	1 cut(s)	575
AjuI	GAANNNNNNNTTGG	6 cut(s)	167, 199, 431, 463, 738, 770
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	2 cut(s)	244, 870
AluI	AGCT	2 cut(s)	244, 870
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	5 cut(s)	194, 374, 437, 500, 674
AlwI	GGATC	1 cut(s)	959
AoxI	GGCC	4 cut(s)	667, 740, 877, 901
ApeKI	GCWGC	4 cut(s)	32, 44, 55, 632
ApoI	RAATTY	1 cut(s)	733
ArsI	GACNNNNNNTTYG	6 cut(s)	373, 405, 436, 468, 499, 531
AspA2I	CCTAGG	1 cut(s)	874
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	301, 667
AsuHPI	GGTGA	3 cut(s)	163, 482, 770
AvaII	GGWCC	1 cut(s)	301
AvrII	CCTAGG	1 cut(s)	874
BalI	TGGCCA	1 cut(s)	903
BanI	GGYRCC	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	3 cut(s)	340, 725, 809
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	19, 42, 56, 644
BccI	CCATC	3 cut(s)	314, 428, 491
BciT130I	CCWGG	1 cut(s)	577
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	5 cut(s)	194, 374, 437, 500, 674
BfaI	CTAG	5 cut(s)	23, 134, 317, 875, 956
BisI	GCNGC	4 cut(s)	33, 45, 56, 633
BlnI	CCTAGG	1 cut(s)	874
BlsI	GCNGC	4 cut(s)	34, 46, 57, 634
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	301, 667
BmiI	GGNNCC	1 cut(s)	829
BmrFI	CCNGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	968, 991
BpiI	GAAGAC	3 cut(s)	340, 725, 809
BpmI	CTGGAG	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	98
BsaI	GGTCTC	3 cut(s)	194, 437, 500
BsaJI	CCNNGG	4 cut(s)	447, 510, 874, 915
BsaWI	WCCGGW	2 cut(s)	148, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 310
Bse3DI	GCAATG	1 cut(s)	840
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	4 cut(s)	447, 510, 874, 915
BseGI	GGATG	6 cut(s)	376, 439, 502, 683, 802, 1006
BseLI	CCNNNNNNNGG	2 cut(s)	199, 310
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	1 cut(s)	654
BseRI	GAGGAG	4 cut(s)	101, 212, 215, 245
BseXI	GCAGC	4 cut(s)	19, 42, 56, 644
BshFI	GGCC	4 cut(s)	669, 742, 879, 903
BshNI	GGYRCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	149, 831
BslI	CCNNNNNNNGG	2 cut(s)	199, 310
BsmAI	GTCTC	5 cut(s)	194, 374, 437, 500, 674
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	4 cut(s)	669, 742, 879, 903
Bso31I	GGTCTC	3 cut(s)	194, 437, 500
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	153, 837, 964
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	4 cut(s)	669, 742, 879, 903
BspCNI	CTCAG	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	829
BspPI	GGATC	1 cut(s)	959
BspT107I	GGYRCC	1 cut(s)	827
BspTNI	GGTCTC	3 cut(s)	194, 437, 500
BsrDI	GCAATG	1 cut(s)	840
BssECI	CCNNGG	4 cut(s)	447, 510, 874, 915
BssMI	GATC	3 cut(s)	153, 837, 964
BssT1I	CCWWGG	4 cut(s)	447, 510, 874, 915
Bst2UI	CCWGG	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	879
BstDEI	CTNAG	1 cut(s)	663
BstEII	GGTNACC	2 cut(s)	470, 940
BstF5I	GGATG	6 cut(s)	376, 439, 502, 683, 802, 1006
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	3 cut(s)	156, 840, 967
BstMAI	GTCTC	5 cut(s)	194, 374, 437, 500, 674
BstMBI	GATC	3 cut(s)	153, 837, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 876
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	538
BstPI	GGTNACC	2 cut(s)	470, 940
BstSCI	CCNGG	1 cut(s)	575
BstV1I	GCAGC	4 cut(s)	19, 42, 56, 644
BstV2I	GAAGAC	3 cut(s)	340, 725, 809
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
BsuRI	GGCC	4 cut(s)	669, 742, 879, 903
BtsCI	GGATG	6 cut(s)	376, 439, 502, 683, 802, 1006
CfoI	GCGC	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	301, 667
CseI	GACGC	1 cut(s)	814
CviAII	CATG	4 cut(s)	178, 283, 407, 535
CviJI	RGCY	9 cut(s)	32, 55, 244, 669, 742, 862, 870, 879, 903
CviKI_1	RGCY	9 cut(s)	32, 55, 244, 669, 742, 862, 870, 879, 903
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	3 cut(s)	155, 839, 966
DpnII	GATC	3 cut(s)	153, 837, 964
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	740, 901
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	4 cut(s)	447, 510, 874, 915
Eco147I	AGGCCT	1 cut(s)	879
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	3 cut(s)	194, 437, 500
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	244
Eco91I	GGTNACC	2 cut(s)	470, 940
EcoICRI	GAGCTC	1 cut(s)	244
EcoO65I	GGTNACC	2 cut(s)	470, 940
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	4 cut(s)	447, 510, 874, 915
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	4 cut(s)	447, 510, 874, 915
FaeI	CATG	4 cut(s)	181, 286, 410, 538
FaiI	YATR	7 cut(s)	8, 179, 218, 284, 408, 536, 660
FalI	AAGNNNNNCTT	6 cut(s)	431, 463, 494, 526, 738, 770
FatI	CATG	4 cut(s)	177, 282, 406, 534
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	837
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	33, 45, 56, 633
FokI	GGATG	6 cut(s)	383, 446, 509, 670, 809, 1013
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	33, 45, 56, 633
FspBI	CTAG	5 cut(s)	23, 134, 317, 875, 956
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	4 cut(s)	33, 45, 56, 633
GsuI	CTGGAG	1 cut(s)	676
HaeIII	GGCC	4 cut(s)	669, 742, 879, 903
HapII	CCGG	2 cut(s)	149, 831
HgaI	GACGC	1 cut(s)	814
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	181, 286, 410, 538
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	868
HinfI	GANTC	5 cut(s)	382, 422, 485, 653, 1015
HpaII	CCGG	2 cut(s)	149, 831
HphI	GGTGA	3 cut(s)	163, 482, 770
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	4 cut(s)	41, 573, 628, 964
Hpy188III	TCNNGA	5 cut(s)	115, 134, 564, 693, 1089
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	6 cut(s)	346, 370, 433, 740, 825, 990
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	3 cut(s)	282, 358, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 876
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	181, 286, 410, 538
HspAI	GCGC	1 cut(s)	594
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	3 cut(s)	153, 837, 964
LmnI	GCTCC	2 cut(s)	41, 1009
Lsp1109I	GCAGC	4 cut(s)	19, 42, 56, 644
LweI	GCATC	2 cut(s)	968, 991
MaeI	CTAG	5 cut(s)	23, 134, 317, 875, 956
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	470, 940
MalI	GATC	3 cut(s)	155, 839, 966
MboI	GATC	3 cut(s)	153, 837, 964
MboII	GAAGA	6 cut(s)	345, 624, 730, 814, 896, 904
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	4 cut(s)	103, 182, 549, 733
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	2 cut(s)	376, 662
MmeI	TCCRAC	1 cut(s)	711
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	1 cut(s)	1006
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	5 cut(s)	72, 102, 143, 260, 849
MslI	CAYNNNNRTG	1 cut(s)	833
Msp20I	TGGCCA	1 cut(s)	903
MspI	CCGG	2 cut(s)	149, 831
MspR9I	CCNGG	1 cut(s)	577
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	41, 876
NdeII	GATC	3 cut(s)	153, 837, 964
NlaIII	CATG	4 cut(s)	181, 286, 410, 538
NlaIV	GGNNCC	1 cut(s)	829
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	879
PciI	ACATGT	1 cut(s)	534
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	422, 485, 1015
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	34, 46, 57, 634
PleI	GAGTC	2 cut(s)	376, 661
PpsI	GAGTC	2 cut(s)	376, 661
PscI	ACATGT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	246
Psp1406I	AACGTT	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	575
PspEI	GGTNACC	2 cut(s)	470, 940
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	829
PspPI	GGNCC	2 cut(s)	301, 667
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PsuI	RGATCY	1 cut(s)	964
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	72, 102, 143, 260, 849
SatI	GCNGC	4 cut(s)	33, 45, 56, 633
Sau3AI	GATC	3 cut(s)	153, 837, 964
Sau96I	GGNCC	2 cut(s)	301, 667
SchI	GAGTC	2 cut(s)	376, 662
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	968, 991
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	103, 182, 549, 733
SseBI	AGGCCT	1 cut(s)	879
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	5 cut(s)	23, 134, 317, 875, 956
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	879
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	4 cut(s)	447, 510, 874, 915
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	156, 619, 983
TasI	AATT	4 cut(s)	103, 182, 549, 733
TfiI	GAWTC	3 cut(s)	422, 485, 1015
Tru1I	TTAA	5 cut(s)	72, 102, 143, 260, 849
Tru9I	TTAA	5 cut(s)	72, 102, 143, 260, 849
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	4 cut(s)	32, 44, 55, 632
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	299, 1001
TspGWI	ACGGA	2 cut(s)	314, 571
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	733
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	5 cut(s)	23, 134, 317, 875, 956
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.