Rmu_sc0019298.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019298.1
OG0001601
Physical Location & Seq
Forward (+)
8414 .. 8953
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019298.1_g000002.1.cds

Sequence Viewer

Length: 540 bp
atggcagaggcgctagttgcaggggctggtctaggagcaggattcacagtgctgtacgatgtgattaataaaggtatggtgggcaagtttatgcaatttaaacccctcctagcagctctccgatcgacgctggactctatacaaccgctgatcatccgacagataggtgagcataacttgaaactggatctcccaaacgaagagattcgtgagcttgagaaacaaatgaaggaaggcgaagaacttatttgcaagttgtcgaagcttcggtggtggaaccgtatcaagtctcgctacaccagccaacttgttgagttggataggtctcttaaagggcttttgaaacaagtacttatgcagcaagcaagggatattaaggagaacttgctcgtagccaagcaaacagccagacaacttgtcgaattccaagagtttaatgaaagactgttaagagaaaggactttgctgcaagaagatgcgagggaatcacaggagaagttcctattggcactgcaaaacaacgggaaaaaaactagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.64

Weight (kDa)

9.35

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 422
AfaI GTAC 2 cut(s) 56, 351
AgsI TTSAA 2 cut(s) 181, 343
AhdI GACNNNNNGTC 1 cut(s) 416
AhlI ACTAGT 1 cut(s) 533
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 116, 214, 265
AluI AGCT 3 cut(s) 116, 214, 265
Alw26I GTCTC 2 cut(s) 294, 330
AlwI GGATC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 113, 358, 466
ApoI RAATTY 1 cut(s) 422
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 179
BbvI GCAGC 3 cut(s) 125, 370, 453
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 294, 330
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 4 cut(s) 14, 32, 110, 534
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 3 cut(s) 114, 359, 467
BlsI GCNGC 3 cut(s) 115, 360, 468
BmcAI AGTACT 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse1I ACTGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 125, 370, 453
Bsh1285I CGRYCG 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 294, 330
Bso31I GGTCTC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 122, 150, 187
BspACI CCGC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 278
BspPI GGATC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 189
BssMI GATC 3 cut(s) 122, 150, 187
Bst4CI ACNGT 3 cut(s) 49, 281, 447
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 363
BstF5I GGATG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 3 cut(s) 125, 153, 190
BstMAI GTCTC 2 cut(s) 294, 330
BstMBI GATC 3 cut(s) 122, 150, 187
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 17, 300
BstV1I GCAGC 3 cut(s) 125, 370, 453
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 2 cut(s) 54, 509
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 13
CseI GACGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 55, 350
CviJI RGCY 8 cut(s) 26, 116, 214, 265, 303, 337, 395, 407
CviKI_1 RGCY 8 cut(s) 26, 116, 214, 265, 303, 337, 395, 407
CviQI GTAC 2 cut(s) 55, 350
DpnI GATC 3 cut(s) 124, 152, 189
DpnII GATC 3 cut(s) 122, 150, 187
DraI TTTAAA 1 cut(s) 100
DriI GACNNNNNGTC 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 422
FaiI YATR 5 cut(s) 77, 92, 140, 174, 356
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 114, 359, 467
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 114, 359, 467
FspBI CTAG 4 cut(s) 14, 32, 110, 534
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 114, 359, 467
HaeII RGCGCY 1 cut(s) 14
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 4 cut(s) 42, 134, 205, 485
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 122, 158
Hpy188III TCNNGA 1 cut(s) 209
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 223, 227
HpyCH4III ACNGT 3 cut(s) 49, 281, 447
HpyCH4V TGCA 6 cut(s) 20, 94, 252, 358, 469, 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 300
HspAI GCGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 3 cut(s) 122, 150, 187
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 8 cut(s) 6, 12, 24, 116, 170, 313, 421, 476
Lsp1109I GCAGC 3 cut(s) 125, 370, 453
LweI GCATC 1 cut(s) 466
MaeI CTAG 4 cut(s) 14, 32, 110, 534
MalI GATC 3 cut(s) 124, 152, 189
MboI GATC 3 cut(s) 122, 150, 187
MboII GAAGA 3 cut(s) 212, 251, 485
MflI RGATCY 1 cut(s) 187
MluCI AATT 2 cut(s) 95, 422
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 181, 297
MnlI CCTC 2 cut(s) 116, 474
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 6 cut(s) 66, 99, 330, 375, 435, 449
MspA1I CMGCKG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 17, 300
NdeII GATC 3 cut(s) 122, 150, 187
NlaIV GGNNCC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 42, 205, 485
PkrI GCNGC 3 cut(s) 115, 360, 468
Ple19I CGATCG 1 cut(s) 125
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 187
PvuI CGATCG 1 cut(s) 125
RsaI GTAC 2 cut(s) 56, 351
RsaNI GTAC 2 cut(s) 55, 350
SaqAI TTAA 6 cut(s) 66, 99, 330, 375, 435, 449
SatI GCNGC 3 cut(s) 114, 359, 467
Sau3AI GATC 3 cut(s) 122, 150, 187
ScaI AGTACT 1 cut(s) 351
SchI GAGTC 1 cut(s) 128
SetI ASST 6 cut(s) 76, 118, 169, 216, 267, 326
SfaNI GCATC 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 2 cut(s) 95, 422
SsiI CCGC 1 cut(s) 146
SspMI CTAG 4 cut(s) 14, 32, 110, 534
TaaI ACNGT 3 cut(s) 49, 281, 447
TaqI TCGA 3 cut(s) 125, 260, 420
TasI AATT 2 cut(s) 95, 422
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 3 cut(s) 42, 205, 485
Tru1I TTAA 6 cut(s) 66, 99, 330, 375, 435, 449
Tru9I TTAA 6 cut(s) 66, 99, 330, 375, 435, 449
TscAI CASTG 2 cut(s) 54, 516
TseI GCWGC 3 cut(s) 113, 358, 466
TspDTI ATGAA 2 cut(s) 242, 453
TspRI CASTG 2 cut(s) 54, 516
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 4 cut(s) 14, 32, 110, 534
ZrmI AGTACT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.