Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

13389076 .. 13392012

Gene Structure 2937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCGAGTTAGTCGCAGGGGCTGGTTTAGGAACAGTGTTCACCATGCTCTACGATGTGGTTAAGGAATGCTTAGTAGTGGGTAAGTTTATGCAGTTTAAACCCCTCCTCGGAGCTCTCAAATCCACCTTAGACTCCATTCAACCACTCATCATCCAACAGATAGGAGAACACAACCTGAAACTGGGTCTCCCAAACGATGAAATACAAAATCTCGAGAAACAAATGAGGGAGGGGGAAAAGCTTGTTGTCAAGCTCTCCAAGCTTCGGATGTGGAACCGCATCAAGTCTCGTTACACAGACCAACTTGTGGAGTTGGATGGAACTCTGAAACGGCTCTTGAAACAGGTGTTGATGCAGCAAGCGAGGGACGTTAAGGAGAACTTGATGGTGGCAAAGGAAACTGCGCAACAACTTGTTGAGATGCAAGAGTTCAATGAGAGACTGCTGAAGGAACGGACGCTGCAGCAGGAAGAAGCGAGAGATCTGCAGGACAAGTTTGTTTCGGCACTCCAAAACAACACTAAACAGCTTGTTCAATTGCAAGGAGTGATAGAAGAAATGATGAAGCAGCAGGAAGCAAGGGAAGTCACTGATGCTGGAACAGGGTATGATCTAGAGAAACTATTCAATGTGTTATACGAAAGCGTTCAGCGGCTGATGGTCGAGCATGTCACATATAAAACCATTCTCCGGAGCATCGAATACGCCCTTGACTCCTTACAACCACTGGTCAAGGTGACAAAGAAACCTAGTGGGCTGTTGTTGGATCGCTTGAAGGAGGACCTAGAAGTTCTGAGAATACAAATGCAAAACGGCATGGAGCTATTACGCAAGTGCGCAAAGATTGGTACATGGAACATCTACAAAAGGTTCAAATACACCAACAAGCTTATTCAATGGGAAGAATCTCTACGAAGACAGATAGATATATTGTACTTGCGTACAATGGGGCGTCCAATTACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

323

Amino Acids

37.61

Weight (kDa)

9.06

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 139	3e-23	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	205 - 311	5.9e-16	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	408, 841
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	693
AciI	CCGC	2 cut(s)	280, 655
AclWI	GGATC	1 cut(s)	777
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	955
AfaI	GTAC	3 cut(s)	853, 938, 946
AfiI	CCNNNNNNNGG	5 cut(s)	110, 184, 267, 310, 693
AgsI	TTSAA	8 cut(s)	143, 343, 436, 539, 631, 778, 877, 899
AluBI	AGCT	7 cut(s)	116, 244, 256, 265, 532, 826, 892
AluI	AGCT	7 cut(s)	116, 244, 256, 265, 532, 826, 892
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	194, 294, 436
AlwI	GGATC	1 cut(s)	777
AlwNI	CAGNNNCTG	2 cut(s)	23, 658
Ama87I	CYCGRG	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	693
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	358, 463, 466, 571
Asp700I	GAANNNNTTC	2 cut(s)	626, 648
AspLEI	GCGC	2 cut(s)	409, 842
AspS9I	GGNCC	1 cut(s)	784
AsuHPI	GGTGA	2 cut(s)	34, 751
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	897, 929
BbsI	GAAGAC	1 cut(s)	925
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	370, 450, 478, 583
BccI	CCATC	3 cut(s)	314, 382, 655
BceAI	ACGGC	2 cut(s)	350, 832
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BcoDI	GTCTC	3 cut(s)	194, 294, 436
BfaI	CTAG	3 cut(s)	617, 753, 788
BfmI	CTRYAG	2 cut(s)	464, 488
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	5 cut(s)	359, 464, 467, 572, 656
BlsI	GCNGC	5 cut(s)	360, 465, 468, 573, 657
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	784
BmiI	GGNNCC	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	5 cut(s)	291, 345, 414, 586, 708
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	925
BsaHI	GRCGYC	1 cut(s)	955
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 184, 267, 310, 693
Bse1I	ACTGG	2 cut(s)	189, 735
BseAI	TCCGGA	1 cut(s)	693
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	3 cut(s)	153, 276, 325
BseLI	CCNNNNNNNGG	5 cut(s)	110, 184, 267, 310, 693
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	2 cut(s)	189, 735
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	370, 450, 478, 583
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	694
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	5 cut(s)	110, 184, 267, 310, 693
BsmAI	GTCTC	3 cut(s)	194, 294, 436
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	484, 613, 769
BspACI	CCGC	2 cut(s)	280, 655
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	789
BspEI	TCCGGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	468, 492
BspPI	GGATC	1 cut(s)	777
BspTNI	GGTCTC	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	189, 735
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	484, 613, 769
BssNI	GRCGYC	1 cut(s)	955
Bst4CI	ACNGT	2 cut(s)	37, 967
BstACI	GRCGYC	1 cut(s)	955
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	73, 130, 797
BstF5I	GGATG	3 cut(s)	153, 276, 325
BstHHI	GCGC	2 cut(s)	409, 842
BstKTI	GATC	3 cut(s)	487, 616, 772
BstMAI	GTCTC	3 cut(s)	194, 294, 436
BstMBI	GATC	3 cut(s)	484, 613, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	674
BstSFI	CTRYAG	2 cut(s)	464, 488
BstV1I	GCAGC	4 cut(s)	370, 450, 478, 583
BstV2I	GAAGAC	1 cut(s)	925
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	153, 276, 325
BtsIMutI	CAGTG	3 cut(s)	42, 591, 728
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	2 cut(s)	23, 658
CfoI	GCGC	2 cut(s)	409, 842
Cfr13I	GGNCC	1 cut(s)	784
CseI	GACGC	2 cut(s)	469, 944
Csp6I	GTAC	3 cut(s)	852, 937, 945
CviAII	CATG	4 cut(s)	46, 671, 820, 855
CviQI	GTAC	3 cut(s)	852, 937, 945
DdeI	CTNAG	3 cut(s)	73, 130, 797
DpnI	GATC	3 cut(s)	486, 615, 771
DpnII	GATC	3 cut(s)	484, 613, 769
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	784
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	4 cut(s)	49, 674, 823, 858
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 368, 400
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	4 cut(s)	45, 670, 819, 854
Fnu4HI	GCNGC	5 cut(s)	359, 464, 467, 572, 656
FokI	GGATG	3 cut(s)	140, 283, 332
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	5 cut(s)	359, 464, 467, 572, 656
FspBI	CTAG	3 cut(s)	617, 753, 788
FspI	TGCGCA	2 cut(s)	408, 841
GlaI	GCGC	2 cut(s)	408, 841
GluI	GCNGC	5 cut(s)	359, 464, 467, 572, 656
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	2 cut(s)	469, 944
HhaI	GCGC	2 cut(s)	409, 842
Hin1I	GRCGYC	1 cut(s)	955
Hin1II	CATG	4 cut(s)	49, 674, 823, 858
Hin6I	GCGC	2 cut(s)	407, 840
HinP1I	GCGC	2 cut(s)	407, 840
HindIII	AAGCTT	3 cut(s)	242, 263, 890
HinfI	GANTC	3 cut(s)	134, 716, 908
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	2 cut(s)	34, 751
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	113, 270, 330, 798
Hpy188III	TCNNGA	5 cut(s)	215, 217, 340, 617, 694
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	445, 772
HpyCH4III	ACNGT	2 cut(s)	37, 967
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	7 cut(s)	94, 358, 427, 466, 490, 544, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	73, 130, 797
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	955
Hsp92II	CATG	4 cut(s)	49, 674, 823, 858
HspAI	GCGC	2 cut(s)	407, 840
Kpn2I	TCCGGA	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	484, 613, 769
LmnI	GCTCC	3 cut(s)	113, 696, 823
Lsp1109I	GCAGC	4 cut(s)	370, 450, 478, 583
LweI	GCATC	5 cut(s)	291, 345, 414, 586, 708
MaeI	CTAG	3 cut(s)	617, 753, 788
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	4 cut(s)	293, 589, 673, 739
MalI	GATC	3 cut(s)	486, 615, 771
MboI	GATC	3 cut(s)	484, 613, 769
MboII	GAAGA	4 cut(s)	485, 569, 917, 930
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	539, 960
MlyI	GAGTC	2 cut(s)	128, 710
MmeI	TCCRAC	3 cut(s)	181, 297, 747
MnlI	CCTC	6 cut(s)	116, 119, 222, 226, 360, 775
MroI	TCCGGA	1 cut(s)	693
MroXI	GAANNNNTTC	2 cut(s)	626, 648
MseI	TTAA	4 cut(s)	63, 99, 375, 970
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	1 cut(s)	694
MssI	GTTTAAAC	1 cut(s)	100
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	3 cut(s)	484, 613, 769
NlaIII	CATG	4 cut(s)	49, 674, 823, 858
NlaIV	GGNNCC	1 cut(s)	278
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	589, 673, 739
NsbI	TGCGCA	2 cut(s)	408, 841
NspI	RCATGY	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	215
PctI	GAATGC	1 cut(s)	74
PdmI	GAANNNNTTC	2 cut(s)	626, 648
PfeI	GAWTC	1 cut(s)	908
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	360, 465, 468, 573, 657
PleI	GAGTC	2 cut(s)	128, 710
PmeI	GTTTAAAC	1 cut(s)	100
PpsI	GAGTC	2 cut(s)	128, 710
PpuMI	RGGWCCY	1 cut(s)	784
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	784
PspPPI	RGGWCCY	1 cut(s)	784
PstI	CTGCAG	2 cut(s)	468, 492
PstNI	CAGNNNCTG	2 cut(s)	23, 658
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	3 cut(s)	853, 938, 946
RsaNI	GTAC	3 cut(s)	852, 937, 945
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	4 cut(s)	63, 99, 375, 970
SatI	GCNGC	5 cut(s)	359, 464, 467, 572, 656
Sau3AI	GATC	3 cut(s)	484, 613, 769
Sau96I	GGNCC	1 cut(s)	784
SchI	GAGTC	2 cut(s)	128, 710
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	5 cut(s)	291, 345, 414, 586, 708
SfcI	CTRYAG	2 cut(s)	464, 488
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	784
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	539, 960
SsiI	CCGC	2 cut(s)	280, 655
SspMI	CTAG	3 cut(s)	617, 753, 788
SstI	GAGCTC	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	37, 967
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	216, 666, 702
TasI	AATT	2 cut(s)	539, 960
TatI	WGTACW	1 cut(s)	936
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	4 cut(s)	63, 99, 375, 970
Tru9I	TTAA	4 cut(s)	63, 99, 375, 970
TscAI	CASTG	3 cut(s)	42, 598, 735
TseFI	GTSAC	3 cut(s)	589, 673, 739
TseI	GCWGC	4 cut(s)	358, 463, 466, 571
Tsp45I	GTSAC	3 cut(s)	589, 673, 739
TspDTI	ATGAA	2 cut(s)	216, 581
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	3 cut(s)	42, 598, 735
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	784
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	1 cut(s)	674
XhoI	CTCGAG	1 cut(s)	215
XmnI	GAANNNNTTC	2 cut(s)	626, 648
XspI	CTAG	3 cut(s)	617, 753, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.