Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

15775543 .. 15776421

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG174600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGATTTTGCAGGTGCTGCTTTAGGCACACTATTTTCTACACTATACAAGGTCGTCGAGAACCTGGTCACGACCTCTAGGCAGTTTCCAAAGTACTTCCAAGACATCAAGTTCACACTAGACCATTTGCAACCACTGATCGAGCAAGTAGAAGATCCCAACCCGCAATTTAGTCTCCCAAGCAGGGAATTAGTGGAAGATTTTCGAAAAGAGATCATCGAGGGCATAAAGCTCGTCAACAAATGCTCCAAGGTCAGTCGTTGGAACGGTGAGAAAAAGTATAGATACAGCAAACAACTTGCAGAATTGGATGGTTCTCTTAAAAGGCGGTTGGAAATACTGAACACTTACGGCATACTTGGTGGCCGGAAGGACACCAAGAAGTTGGTGAGGATGACTCAGAGATTGTATATTGCTTTGGCCAGCATGGTGGCCATGGTGTTGATGGCTATCTCTTTGTTCCTTTGGCACAACTGGTTTAGGCTTCATGGAAATTATGATCAGGTACCAAACTTGTCAAGCTTGCAAATCACAGCGAAGGAGGCAAAGAGAAATTGGTTATCCCACCTCTTGAGGCCAGCTTTTTGTCTTTTGGAAGGACTGCTTCGGCTTATGCTTTCTCTTTCACGAGGAGTTTTTCATTTAGCATCTTCCCTTTTGCAAGGACTATGCTGGGTCGTTGTTTCTACTTTGCTAGGATTGCTACGACTCTGTTGGAGACATTTAGTTCGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

246

Amino Acids

28.45

Weight (kDa)

9.91

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	4 - 114	3.9e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	508
AciI	CCGC	3 cut(s)	5, 167, 331
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	3 cut(s)	367, 423, 435
AfaI	GTAC	2 cut(s)	98, 510
AfiI	CCNNNNNNNGG	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	3 cut(s)	235, 525, 584
AluI	AGCT	3 cut(s)	235, 525, 584
Alw26I	GTCTC	2 cut(s)	182, 715
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	367, 423, 435, 578
ApeKI	GCWGC	1 cut(s)	20
ArsI	GACNNNNNNTTYG	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	204
Asp718I	GGTACC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	284, 403
AsuII	TTCGAA	1 cut(s)	208
BalI	TGGCCA	2 cut(s)	425, 437
BanI	GGYRCC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	308, 442
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	182, 715
BfaI	CTAG	3 cut(s)	81, 122, 698
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu14I	TTCGAA	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	595
BsaBI	GATNNNNATC	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	252, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	482
Bse8I	GATNNNNATC	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	252, 438
BseGI	GGATG	2 cut(s)	319, 402
BseJI	GATNNNNATC	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	1 cut(s)	675
BshFI	GGCC	4 cut(s)	369, 425, 437, 580
BshNI	GGYRCC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	182, 715
BsnI	GGCC	4 cut(s)	369, 425, 437, 580
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	141, 157, 216, 502
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	3 cut(s)	5, 167, 331
BspANI	GGCC	4 cut(s)	369, 425, 437, 580
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	510
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	252, 438
BssMI	GATC	4 cut(s)	141, 157, 216, 502
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	252, 438
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	427, 527, 582
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	319, 402
BstKTI	GATC	4 cut(s)	144, 160, 219, 505
BstMAI	GTCTC	2 cut(s)	182, 715
BstMBI	GATC	4 cut(s)	141, 157, 216, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 545, 703
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	2 cut(s)	388, 433
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	369, 425, 437, 580
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	319, 402
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	3 cut(s)	427, 527, 582
CaiI	CAGNNNCTG	1 cut(s)	20
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	97, 509
CviAII	CATG	3 cut(s)	430, 439, 491
CviQI	GTAC	2 cut(s)	97, 509
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	143, 159, 218, 504
DpnII	GATC	4 cut(s)	141, 157, 216, 502
EaeI	YGGCCR	3 cut(s)	367, 423, 435
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	252, 438
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	252, 438
ErhI	CCWWGG	2 cut(s)	252, 438
FaeI	CATG	3 cut(s)	433, 442, 494
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FatI	CATG	3 cut(s)	429, 438, 490
FauI	CCCGC	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	2 cut(s)	326, 409
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	81, 122, 698
GluI	GCNGC	1 cut(s)	21
GsaI	CCCAGC	1 cut(s)	679
HaeIII	GGCC	4 cut(s)	369, 425, 437, 580
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	3 cut(s)	433, 442, 494
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	2 cut(s)	400, 711
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	284, 403
Hpy166II	GTNNAC	2 cut(s)	117, 241
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	4 cut(s)	61, 73, 574, 630
Hpy8I	GTNNAC	2 cut(s)	117, 241
Hpy99I	CGWCG	2 cut(s)	62, 738
HpyAV	CCTTC	3 cut(s)	367, 535, 593
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	14, 133, 305, 529, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 545, 703
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	433, 442, 494
KpnI	GGTACC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	141, 157, 216, 502
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	9 cut(s)	53, 80, 172, 383, 439, 463, 491, 594, 661
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	659
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	3 cut(s)	81, 122, 698
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	143, 159, 218, 504
MboI	GATC	4 cut(s)	141, 157, 216, 502
MboII	GAAGA	3 cut(s)	167, 212, 645
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	2 cut(s)	425, 437
MluCI	AATT	5 cut(s)	170, 191, 308, 496, 556
MluNI	TGGCCA	2 cut(s)	425, 437
MlyI	GAGTC	2 cut(s)	394, 705
MmeI	TCCRAC	3 cut(s)	245, 315, 698
MnlI	CCTC	7 cut(s)	88, 217, 387, 538, 570, 581, 626
Mox20I	TGGCCA	2 cut(s)	425, 437
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	2 cut(s)	425, 437
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	2 cut(s)	425, 437
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 545, 703
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	141, 157, 216, 502
NlaIII	CATG	3 cut(s)	433, 442, 494
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	394, 705
PpsI	GAGTC	2 cut(s)	394, 705
Psp6I	CCWGG	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	98, 510
RsaNI	GTAC	2 cut(s)	97, 509
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	4 cut(s)	141, 157, 216, 502
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	2 cut(s)	394, 705
ScrFI	CCNGG	1 cut(s)	68
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	659
SfuI	TTCGAA	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	5 cut(s)	170, 191, 308, 496, 556
SsiI	CCGC	3 cut(s)	5, 167, 331
SspMI	CTAG	3 cut(s)	81, 122, 698
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	252, 438
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	4 cut(s)	60, 144, 208, 222
TasI	AATT	5 cut(s)	170, 191, 308, 496, 556
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	479, 632
TspRI	CASTG	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	3 cut(s)	81, 122, 698
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.