Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

13773383 .. 13774812

Gene Structure 1430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG158200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAGAGGCGCTAGTTGCAGGGGCTGGTCTAGGAGCAGGATTCACAGTGCTGTACGATGTGATTAATAAAGGTATGGTGGGCAAGTTTATGCAATTTAAACCCCTCCTAGCAGCTCTCCGATCGACGCTGGACTCTATACAACCGCTGATCATCCGACAGATAGGTGAGCATAACTTGAAACTGGATCTCCCAAACGAAGAGATTCGTGAGCTTGAGATACAAATGAAGGAAGGCGAAGAACTTATTTGCAAGTTGTCGAAGCTTCGGTGGTGGAACCGTATCAAGTCTCGCTACACCAGACAACTTGTTGAGTTGGATAGGTCTCTTAAAGGGCTTTTGAAACAAGTACTTATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTCGTAGCCAAGCAAACAGCCAGACAACTTGTCGAATTCCAAGAGTTTAATGAAAGACTGTTAAGAGAAAGGACTTTGCTGCAAGAAGATGCGAGGGAATCACAGGAGAAGTTCCTATTGGCACTGCAAAACAACGGGAAAAAACTAGTTGAATTGCAAGCAGTAATAGAAGAAATGATGAAGCAGCAAGAAGCAAGAGATGTTACTAATGCAGTTGCAGTAGCAGCAGCAGAAGGGAATCAGCTTGAAGAGCCTAATCTGATTGACATATTCAAGGATCTCTATGAAGCTCTTCAGCAGCTGTTCAACGAAAATAGCACATATAAACCTGTCCTCAGAAGCATCAAGTCTACTTTAGACTCTTTACCACCACTTATTGAAGTGACAGAAAACACAATCTATCTCCGAGTACACGAAAGTTTGAAGGAGATCCTATTGGAGCAGGATCGCGAGCAGTATCGGGAGGTGAAAGAGAAATTGAAAAATGTTAGAATGCAAATGCTAGAGGGCGTCGAGCTCTTCCGCAACTTCTCAAAACATCATCCATGGAACTTCTGCAAGAAGTCCCATAACGCGTACAAATTAATTCAATGGGATGAATCTCTTCAAAGACATGTAAAAAAATTAATGGAGAAGAAACGTAGCATCAAAAGCAATTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

41.03

Weight (kDa)

8.78

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 139	4.9e-24	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	737
AccII	CGCG	2 cut(s)	837, 962
AciI	CCGC	2 cut(s)	146, 910
AclWI	GGATC	4 cut(s)	195, 672, 811, 840
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	897
AfaI	GTAC	4 cut(s)	56, 351, 798, 965
AflIII	ACRYGT	2 cut(s)	960, 1000
AhdI	GACNNNNNGTC	1 cut(s)	416
AhlI	ACTAGT	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	7 cut(s)	116, 214, 265, 631, 677, 688, 904
AluI	AGCT	7 cut(s)	116, 214, 265, 631, 677, 688, 904
Alw21I	GWGCWC	1 cut(s)	906
Alw26I	GTCTC	2 cut(s)	294, 330
AlwI	GGATC	4 cut(s)	195, 672, 811, 840
AlwNI	CAGNNNCTG	2 cut(s)	26, 688
ApeKI	GCWGC	7 cut(s)	113, 358, 466, 571, 611, 614, 685
ApoI	RAATTY	1 cut(s)	422
AseI	ATTAAT	3 cut(s)	66, 971, 1013
Asp700I	GAANNNNTTC	3 cut(s)	204, 678, 990
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	179, 865
BanII	GRGCYC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	906
BbvI	GCAGC	7 cut(s)	125, 370, 453, 583, 623, 626, 697
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	294, 330
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	5 cut(s)	14, 32, 110, 533, 890
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	7 cut(s)	114, 359, 467, 572, 612, 615, 686
BlsI	GCNGC	7 cut(s)	115, 360, 468, 573, 613, 616, 687
BmcAI	AGTACT	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	278
BmsI	GCATC	3 cut(s)	466, 738, 1041
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	932
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	932
BseGI	GGATG	3 cut(s)	153, 928, 988
BseMII	CTCAG	1 cut(s)	736
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	7 cut(s)	125, 370, 453, 583, 623, 626, 697
Bsh1236I	CGCG	2 cut(s)	837, 962
Bsh1285I	CGRYCG	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	906
BslFI	GGGAC	1 cut(s)	937
BsmAI	GTCTC	2 cut(s)	294, 330
BsmFI	GGGAC	1 cut(s)	937
BsmI	GAATGC	1 cut(s)	885
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp143I	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
Bsp19I	CCATGG	1 cut(s)	932
Bsp68I	TCGCGA	1 cut(s)	837
BspACI	CCGC	2 cut(s)	146, 910
BspCNI	CTCAG	1 cut(s)	735
BspFNI	CGCG	2 cut(s)	837, 962
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	4 cut(s)	195, 672, 811, 840
BspQI	GCTCTTC	3 cut(s)	630, 684, 911
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	932
BssMI	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
BssNI	GRCGYC	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	932
Bst4CI	ACNGT	3 cut(s)	49, 281, 447
Bst6I	CTCTTC	5 cut(s)	195, 630, 684, 911, 996
BstACI	GRCGYC	1 cut(s)	897
BstC8I	GCNNGC	3 cut(s)	363, 546, 839
BstDEI	CTNAG	1 cut(s)	722
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	3 cut(s)	153, 928, 988
BstFNI	CGCG	2 cut(s)	837, 962
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	6 cut(s)	125, 153, 190, 667, 819, 835
BstMAI	GTCTC	2 cut(s)	294, 330
BstMBI	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 611, 637, 1038
BstNSI	RCATGY	1 cut(s)	1004
BstUI	CGCG	2 cut(s)	837, 962
BstV1I	GCAGC	7 cut(s)	125, 370, 453, 583, 623, 626, 697
BstX2I	RGATCY	3 cut(s)	187, 664, 816
BstYI	RGATCY	3 cut(s)	187, 664, 816
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	3 cut(s)	153, 928, 988
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	54, 509
BtuMI	TCGCGA	1 cut(s)	837
Cac8I	GCNNGC	3 cut(s)	363, 546, 839
CaiI	CAGNNNCTG	2 cut(s)	26, 688
CfoI	GCGC	1 cut(s)	13
CseI	GACGC	2 cut(s)	136, 886
Csp6I	GTAC	4 cut(s)	55, 350, 797, 964
CviAII	CATG	2 cut(s)	933, 1001
CviQI	GTAC	4 cut(s)	55, 350, 797, 964
DdeI	CTNAG	1 cut(s)	722
DpnI	GATC	6 cut(s)	124, 152, 189, 666, 818, 834
DpnII	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
DraI	TTTAAA	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	5 cut(s)	195, 630, 684, 911, 996
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	5 cut(s)	195, 630, 684, 911, 996
Ecl136II	GAGCTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	904
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	932
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	2 cut(s)	936, 1004
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	2 cut(s)	932, 1000
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	7 cut(s)	114, 359, 467, 572, 612, 615, 686
FokI	GGATG	3 cut(s)	140, 915, 995
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	7 cut(s)	114, 359, 467, 572, 612, 615, 686
FspBI	CTAG	5 cut(s)	14, 32, 110, 533, 890
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	7 cut(s)	114, 359, 467, 572, 612, 615, 686
HaeII	RGCGCY	1 cut(s)	14
HgaI	GACGC	2 cut(s)	136, 886
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	897
Hin1II	CATG	2 cut(s)	936, 1004
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	7 cut(s)	42, 134, 205, 485, 625, 746, 986
HphI	GGTGA	2 cut(s)	179, 865
Hpy166II	GTNNAC	2 cut(s)	738, 799
Hpy188I	TCNGA	6 cut(s)	122, 158, 648, 725, 794, 1052
Hpy188III	TCNNGA	3 cut(s)	209, 836, 848
Hpy8I	GTNNAC	2 cut(s)	738, 799
Hpy99I	CGWCG	2 cut(s)	130, 902
HpyAV	CCTTC	4 cut(s)	223, 227, 614, 805
HpyCH4III	ACNGT	3 cut(s)	49, 281, 447
HpyCH4IV	ACGT	1 cut(s)	1027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 611, 637, 1038
HpyF3I	CTNAG	1 cut(s)	722
HpySE526I	ACGT	1 cut(s)	1027
Hsp92I	GRCGYC	1 cut(s)	897
Hsp92II	CATG	2 cut(s)	936, 1004
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
LguI	GCTCTTC	3 cut(s)	630, 684, 911
LmnI	GCTCC	2 cut(s)	35, 826
Lsp1109I	GCAGC	7 cut(s)	125, 370, 453, 583, 623, 626, 697
LweI	GCATC	3 cut(s)	466, 738, 1041
MaeI	CTAG	5 cut(s)	14, 32, 110, 533, 890
MaeII	ACGT	1 cut(s)	1027
MaeIII	GTNAC	2 cut(s)	589, 769
MalI	GATC	6 cut(s)	124, 152, 189, 666, 818, 834
MboI	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
MboII	GAAGA	9 cut(s)	212, 251, 485, 569, 647, 671, 898, 983, 1033
MflI	RGATCY	3 cut(s)	187, 664, 816
MhlI	GDGCHC	1 cut(s)	906
MluCI	AATT	8 cut(s)	95, 422, 539, 863, 968, 972, 1010, 1042
MluI	ACGCGT	1 cut(s)	960
MlyI	GAGTC	2 cut(s)	128, 740
MmeI	TCCRAC	2 cut(s)	181, 297
MnlI	CCTC	5 cut(s)	116, 474, 731, 844, 886
MroXI	GAANNNNTTC	3 cut(s)	204, 678, 990
MseI	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 971, 1013
MspA1I	CMGCKG	2 cut(s)	148, 688
Mva1269I	GAATGC	1 cut(s)	885
MvnI	CGCG	2 cut(s)	837, 962
MwoI	GCNNNNNNNGC	4 cut(s)	17, 611, 637, 1038
NcoI	CCATGG	1 cut(s)	932
NdeII	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
NlaIII	CATG	2 cut(s)	936, 1004
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	769
NruI	TCGCGA	1 cut(s)	837
NspI	RCATGY	1 cut(s)	1004
PciI	ACATGT	1 cut(s)	1000
PciSI	GCTCTTC	3 cut(s)	630, 684, 911
PctI	GAATGC	1 cut(s)	885
PdmI	GAANNNNTTC	3 cut(s)	204, 678, 990
PfeI	GAWTC	5 cut(s)	42, 205, 485, 625, 986
PkrI	GCNGC	7 cut(s)	115, 360, 468, 573, 613, 616, 687
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	2 cut(s)	128, 740
PpsI	GAGTC	2 cut(s)	128, 740
PscI	ACATGT	1 cut(s)	1000
PshBI	ATTAAT	3 cut(s)	66, 971, 1013
Psp124BI	GAGCTC	1 cut(s)	906
PspN4I	GGNNCC	1 cut(s)	278
PstNI	CAGNNNCTG	2 cut(s)	26, 688
PsuI	RGATCY	3 cut(s)	187, 664, 816
PvuI	CGATCG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	688
RruI	TCGCGA	1 cut(s)	837
RsaI	GTAC	4 cut(s)	56, 351, 798, 965
RsaNI	GTAC	4 cut(s)	55, 350, 797, 964
SacI	GAGCTC	1 cut(s)	906
SapI	GCTCTTC	3 cut(s)	630, 684, 911
SaqAI	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 971, 1013
SatI	GCNGC	7 cut(s)	114, 359, 467, 572, 612, 615, 686
Sau3AI	GATC	6 cut(s)	122, 150, 187, 664, 816, 832
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	2 cut(s)	128, 740
SduI	GDGCHC	1 cut(s)	906
SfaNI	GCATC	3 cut(s)	466, 738, 1041
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	8 cut(s)	95, 422, 539, 863, 968, 972, 1010, 1042
SsiI	CCGC	2 cut(s)	146, 910
SspMI	CTAG	5 cut(s)	14, 32, 110, 533, 890
SstI	GAGCTC	1 cut(s)	906
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	3 cut(s)	49, 281, 447
TaiI	ACGT	1 cut(s)	1030
TaqI	TCGA	4 cut(s)	125, 260, 420, 900
TasI	AATT	8 cut(s)	95, 422, 539, 863, 968, 972, 1010, 1042
TatI	WGTACW	2 cut(s)	349, 796
TfiI	GAWTC	5 cut(s)	42, 205, 485, 625, 986
Tru1I	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 971, 1013
Tru9I	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 971, 1013
TscAI	CASTG	2 cut(s)	54, 516
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	7 cut(s)	113, 358, 466, 571, 611, 614, 685
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	5 cut(s)	242, 453, 581, 687, 999
TspRI	CASTG	2 cut(s)	54, 516
VspI	ATTAAT	3 cut(s)	66, 971, 1013
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	1004
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	3 cut(s)	204, 678, 990
XspI	CTAG	5 cut(s)	14, 32, 110, 533, 890
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.