Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

12841647 .. 12842300

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G013410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCGAGTTAGTCGCAGGGGCTGGTTTAGGAACAGTGTTCACCATGCTCTACGATGTGGTTAAGGAATGCTTAGTAGTGGGCAAGTTTATGCAGTTTAAACCCCTCCTCGGAGCTCTCAAATCCACCTTAGACTCCATTCAACCACTCATCATCCAACAGATAGGAGAACACAACCTGAAACTGGGTCTCCCAAACGATGAAATACAAAATCTCGAGAAACAAATGAGGGAGGCGGAAAAGCTTGTTGTCAAGCTCTCCAAACTTCGGATGTGGAACCGCATCAAGTCTCGTTACACAGACCAACTTGTGGAGTTGGATGGAACTCTGAAACGGCTCTTGAAACAGGTGTTGATGCAGCAAGCGAGGGACGTTAAGGAGAACTTGATGGTGGCAAAGGAAACTGCGCAACAACTTGTTGAGATGCAAGAGTTCAATGAGAGACTGCTGAAGGAACGGACGCTGCAGCAGGAAGAAGCGAGAGATCTGCAGGACAAGTTTGTTTCGGCACTCCAAAACAACGCTAAACAGCTTGTTCAATTGCAAGGAGTGATAGAAGAAATGATGAAGCAGCAGGAAGCAAGGGAAGTCACTGATGCCGGAACAGGTAACTTTTTCTTGGATATATATATATATATATATGTATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

217

Amino Acids

25.05

Weight (kDa)

5.67

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 139	1.3e-23	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	236, 280
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	470
AfiI	CCNNNNNNNGG	4 cut(s)	110, 184, 267, 310
AgsI	TTSAA	4 cut(s)	143, 343, 436, 539
AluBI	AGCT	4 cut(s)	116, 244, 256, 532
AluI	AGCT	4 cut(s)	116, 244, 256, 532
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	194, 294, 436
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	358, 463, 466, 571
AspLEI	GCGC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	370, 450, 478, 583
BccI	CCATC	2 cut(s)	314, 382
BceAI	ACGGC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BcoDI	GTCTC	3 cut(s)	194, 294, 436
BfmI	CTRYAG	2 cut(s)	464, 488
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	4 cut(s)	359, 464, 467, 572
BlsI	GCNGC	4 cut(s)	360, 465, 468, 573
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	4 cut(s)	291, 345, 414, 586
BmuI	ACTGGG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 184, 267, 310
Bse1I	ACTGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	3 cut(s)	153, 276, 325
BseLI	CCNNNNNNNGG	4 cut(s)	110, 184, 267, 310
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	370, 450, 478, 583
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	110, 184, 267, 310
BsmAI	GTCTC	3 cut(s)	194, 294, 436
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	2 cut(s)	236, 280
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	468, 492
BspTNI	GGTCTC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	73, 130
BstF5I	GGATG	3 cut(s)	153, 276, 325
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	3 cut(s)	194, 294, 436
BstMBI	GATC	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	464, 488
BstV1I	GCAGC	4 cut(s)	370, 450, 478, 583
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	153, 276, 325
BtsIMutI	CAGTG	2 cut(s)	42, 591
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	409
CseI	GACGC	1 cut(s)	469
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	5, 23, 116, 244, 256, 337, 532
CviKI_1	RGCY	7 cut(s)	5, 23, 116, 244, 256, 337, 532
DdeI	CTNAG	2 cut(s)	73, 130
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	1 cut(s)	49
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 368, 400
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	359, 464, 467, 572
FokI	GGATG	3 cut(s)	140, 283, 332
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	359, 464, 467, 572
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	4 cut(s)	359, 464, 467, 572
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	600
HgaI	GACGC	1 cut(s)	469
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	3 cut(s)	113, 270, 330
Hpy188III	TCNNGA	3 cut(s)	215, 217, 340
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	6 cut(s)	94, 358, 427, 466, 490, 544
HpyF3I	CTNAG	2 cut(s)	73, 130
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	4 cut(s)	370, 450, 478, 583
LweI	GCATC	4 cut(s)	291, 345, 414, 586
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	293, 589, 608
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	2 cut(s)	485, 569
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	181, 297
MnlI	CCTC	5 cut(s)	116, 119, 222, 226, 360
MseI	TTAA	3 cut(s)	63, 99, 375
MspI	CCGG	1 cut(s)	600
MssI	GTTTAAAC	1 cut(s)	100
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	278
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	589
NsbI	TGCGCA	1 cut(s)	408
PaeR7I	CTCGAG	1 cut(s)	215
PctI	GAATGC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	360, 465, 468, 573
PleI	GAGTC	1 cut(s)	128
PmeI	GTTTAAAC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	2 cut(s)	468, 492
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	63, 99, 375
SatI	GCNGC	4 cut(s)	359, 464, 467, 572
Sau3AI	GATC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	9 cut(s)	118, 131, 180, 246, 258, 351, 375, 534, 610
SfaNI	GCATC	4 cut(s)	291, 345, 414, 586
SfcI	CTRYAG	2 cut(s)	464, 488
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	2 cut(s)	236, 280
SstI	GAGCTC	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	63, 99, 375
Tru9I	TTAA	3 cut(s)	63, 99, 375
TscAI	CASTG	2 cut(s)	42, 598
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	4 cut(s)	358, 463, 466, 571
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	216, 581
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	2 cut(s)	42, 598
Van91I	CCANNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.