Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353357.1

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

25 .. 477

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353357.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ctgggtctcccaaacgatgaaatacaaaatctcgagaaacaaattagggaggcggaaaagcttgtcctcaagctctccaagcttcgcatgtggaaccccatcaagtctcgttacacaaaccaacttgtggagttggatggaactctgaaacggctcttgaaacaagtgttgatgcagcaagcgagggacattaaggagaacttgctcgtggcaaaagaaactgcgcaacaacgtgtcaagatgcaagagtccaatgagatactgttgaaggaacggatgctgcagcaggaagtagtgagagatttgcaggacaagtttgtttcagcactccaaaacaacgcgaaacagcttgttcaattacaggaggtgatagaagaaacgatgcggctgcacatagcaaaggaagtcactgataccggaacaagtaactttctcttggaaatatatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.6

Weight (kDa)

8.11

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccII	CGCG	1 cut(s)	341
AciI	CCGC	2 cut(s)	53, 385
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	160, 268, 356
AluBI	AGCT	4 cut(s)	61, 73, 82, 349
AluI	AGCT	4 cut(s)	61, 73, 82, 349
Alw26I	GTCTC	2 cut(s)	11, 111
Ama87I	CYCGRG	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	175, 280, 283, 388
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	32
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	187, 267, 295, 375
BccI	CCATC	2 cut(s)	107, 131
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BcoDI	GTCTC	2 cut(s)	11, 111
BfmI	CTRYAG	1 cut(s)	281
BisI	GCNGC	5 cut(s)	176, 281, 284, 386, 389
BlsI	GCNGC	5 cut(s)	177, 282, 285, 387, 390
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	4 cut(s)	162, 231, 267, 372
BpuEI	CTTGAG	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	142, 282
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	187, 267, 295, 375
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	11, 111
BsmFI	GGGAC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	32
BspACI	CCGC	2 cut(s)	53, 385
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	142, 282
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	11, 111
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	4 cut(s)	187, 267, 295, 375
BtsCI	GGATG	2 cut(s)	142, 282
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	226
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	61, 73, 82, 154, 349, 388
CviKI_1	RGCY	6 cut(s)	61, 73, 82, 154, 349, 388
EciI	GGCGGA	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	32
FaeI	CATG	1 cut(s)	91
FaiI	YATR	6 cut(s)	89, 395, 445, 447, 449, 451
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	176, 281, 284, 386, 389
FokI	GGATG	2 cut(s)	149, 289
Fsp4HI	GCNGC	5 cut(s)	176, 281, 284, 386, 389
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	176, 281, 284, 386, 389
HapII	CCGG	1 cut(s)	417
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HindIII	AAGCTT	2 cut(s)	59, 80
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	4 cut(s)	32, 34, 157, 238
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	175, 244, 283, 307, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	272, 293, 347, 430
Lsp1109I	GCAGC	4 cut(s)	187, 267, 295, 375
LweI	GCATC	4 cut(s)	162, 231, 267, 372
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	110, 406, 425
MboII	GAAGA	1 cut(s)	386
MluCI	AATT	2 cut(s)	42, 356
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	43, 77, 177, 358
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	225
NspI	RCATGY	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	177, 282, 285, 387, 390
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	176, 281, 284, 386, 389
SchI	GAGTC	1 cut(s)	257
SetI	ASST	6 cut(s)	63, 75, 84, 235, 351, 369
SfaNI	GCATC	4 cut(s)	162, 231, 267, 372
SfcI	CTRYAG	1 cut(s)	281
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	32, 68
SmoI	CTYRAG	2 cut(s)	32, 68
Sse9I	AATT	2 cut(s)	42, 356
SsiI	CCGC	2 cut(s)	53, 385
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	42, 356
TauI	GCSGC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	4 cut(s)	175, 280, 283, 388
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.