Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Forward (+)

12929999 .. 12931400

Gene Structure 1402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G013440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAGAGGCGCTAGTTGCAGGGGCTGGTCTAGGAGCAGGATTCACAGTGCTGTACGATGTGATTAATAAAGGAATGGTGGGCAAGTTTATGCAATTTAAACCCCTCCTAGCAGCTCTCCGATCGACGCTGGACTCTATACAACCGCTGATCATCCGACAGATAGGTGAGCATAACTTGAAACTGGATCTCCCAAACGAAGAGATTCGTGAGCTTGAGAAACAAATGAAGGAAGGCGAAGAACTTATTTGCAAGTTGTCGAAGCTTCGGTGGTGGAACCGTATCAAGTCTCGCTACACCAGACAACTTGTTGAGTTGGATAGGTCTCTTAAAGGGCTTTTGAAACAAGTACTTATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTCGTAGCCAAGCAAACAGCCAGACAACTTGTCGAATTCCAAGAGTTTAATGAAAGACTGTTAAGAGAAAGGACTTTGCTGCAAGAAGATGCGAGGGAATCACAGGAGAAGTTCCTATTGGCACTGCAAAACAACGGGAAAAAACTAGTTGAATTGCAAGCAGTAATAGAAGAAATGATGAAGCAGCAAGAAGCAAGAGATGTTACTAATGCAGTTGCACCTAATCTGATGTCAATATTCAAGGATCTCTATGAAGCTCTTCAGCAGCTGTTCAACGAAAATAGCACATATAAACCAGTCCTCAGAAGCATCAAGTCTACTTTAGACTCTTTACCACCACTTATTGAAGTGACAGAAAACACAATCTATCTCCGAGTACACGAAAGTTTGAAGGAGATCCTATTGGAGCAGGATCGCGAGCAGTATCGGGAGCTGAAAGAGAAATTGAAAAATGTTAGAATGCAAATGCTAGAGGGCGTCGAGCTCTTCCGCAACTTCTCAAAACATCATCCATGGAACTTCTGCAAGAAGTCCCATAACGCGTACAAATTAATTCAATGGGATGAATCTCTTCAAAGACATGTAAAAAAATTAATGGAGAAGAAACGTAGCATCAAAAGCAATTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

339

Amino Acids

39.94

Weight (kDa)

9.29

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 139	5.5e-25	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	704
AccII	CGCG	2 cut(s)	804, 929
AciI	CCGC	2 cut(s)	146, 877
AclWI	GGATC	4 cut(s)	195, 639, 778, 807
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	864
AfaI	GTAC	4 cut(s)	56, 351, 765, 932
AflIII	ACRYGT	2 cut(s)	927, 967
AhdI	GACNNNNNGTC	1 cut(s)	416
AhlI	ACTAGT	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	7 cut(s)	116, 214, 265, 644, 655, 820, 871
AluI	AGCT	7 cut(s)	116, 214, 265, 644, 655, 820, 871
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	2 cut(s)	294, 330
AlwI	GGATC	4 cut(s)	195, 639, 778, 807
AlwNI	CAGNNNCTG	2 cut(s)	26, 655
ApeKI	GCWGC	5 cut(s)	113, 358, 466, 571, 652
ApoI	RAATTY	1 cut(s)	422
AseI	ATTAAT	3 cut(s)	66, 938, 980
Asp700I	GAANNNNTTC	3 cut(s)	204, 645, 957
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	873
BbvI	GCAGC	5 cut(s)	125, 370, 453, 583, 664
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	294, 330
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	5 cut(s)	14, 32, 110, 533, 857
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	5 cut(s)	114, 359, 467, 572, 653
BlsI	GCNGC	5 cut(s)	115, 360, 468, 573, 654
BmcAI	AGTACT	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	278
BmsI	GCATC	3 cut(s)	466, 705, 1008
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	864
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	899
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	2 cut(s)	189, 683
BseDI	CCNNGG	1 cut(s)	899
BseGI	GGATG	3 cut(s)	153, 895, 955
BseMII	CTCAG	1 cut(s)	703
BseNI	ACTGG	2 cut(s)	189, 683
BseXI	GCAGC	5 cut(s)	125, 370, 453, 583, 664
Bsh1236I	CGCG	2 cut(s)	804, 929
Bsh1285I	CGRYCG	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	873
BslFI	GGGAC	1 cut(s)	904
BsmAI	GTCTC	2 cut(s)	294, 330
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	852
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
Bsp19I	CCATGG	1 cut(s)	899
Bsp68I	TCGCGA	1 cut(s)	804
BspACI	CCGC	2 cut(s)	146, 877
BspCNI	CTCAG	1 cut(s)	702
BspFNI	CGCG	2 cut(s)	804, 929
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	4 cut(s)	195, 639, 778, 807
BspQI	GCTCTTC	2 cut(s)	651, 878
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	189, 683
BssECI	CCNNGG	1 cut(s)	899
BssMI	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	49, 281, 447
Bst6I	CTCTTC	4 cut(s)	195, 651, 878, 963
BstACI	GRCGYC	1 cut(s)	864
BstC8I	GCNNGC	3 cut(s)	363, 546, 806
BstDEI	CTNAG	1 cut(s)	689
BstDSI	CCRYGG	1 cut(s)	899
BstF5I	GGATG	3 cut(s)	153, 895, 955
BstFNI	CGCG	2 cut(s)	804, 929
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	6 cut(s)	125, 153, 190, 634, 786, 802
BstMAI	GTCTC	2 cut(s)	294, 330
BstMBI	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 1005
BstNSI	RCATGY	1 cut(s)	971
BstUI	CGCG	2 cut(s)	804, 929
BstV1I	GCAGC	5 cut(s)	125, 370, 453, 583, 664
BstX2I	RGATCY	3 cut(s)	187, 631, 783
BstYI	RGATCY	3 cut(s)	187, 631, 783
BtgI	CCRYGG	1 cut(s)	899
BtsCI	GGATG	3 cut(s)	153, 895, 955
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	54, 509
BtuMI	TCGCGA	1 cut(s)	804
Cac8I	GCNNGC	3 cut(s)	363, 546, 806
CaiI	CAGNNNCTG	2 cut(s)	26, 655
CfoI	GCGC	1 cut(s)	13
CseI	GACGC	2 cut(s)	136, 853
Csp6I	GTAC	4 cut(s)	55, 350, 764, 931
CviAII	CATG	2 cut(s)	900, 968
CviQI	GTAC	4 cut(s)	55, 350, 764, 931
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	6 cut(s)	124, 152, 189, 633, 785, 801
DpnII	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
DraI	TTTAAA	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	4 cut(s)	195, 651, 878, 963
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	4 cut(s)	195, 651, 878, 963
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	899
Eco24I	GRGCYC	1 cut(s)	873
Eco31I	GGTCTC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	871
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	899
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	899
FaeI	CATG	2 cut(s)	903, 971
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	2 cut(s)	899, 967
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	704
Fnu4HI	GCNGC	5 cut(s)	114, 359, 467, 572, 653
FokI	GGATG	3 cut(s)	140, 882, 962
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	5 cut(s)	114, 359, 467, 572, 653
FspBI	CTAG	5 cut(s)	14, 32, 110, 533, 857
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	5 cut(s)	114, 359, 467, 572, 653
HaeII	RGCGCY	1 cut(s)	14
HgaI	GACGC	2 cut(s)	136, 853
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	2 cut(s)	903, 971
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	6 cut(s)	42, 134, 205, 485, 713, 953
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	705, 766
Hpy188I	TCNGA	6 cut(s)	122, 158, 615, 692, 761, 1019
Hpy188III	TCNNGA	3 cut(s)	209, 803, 815
Hpy8I	GTNNAC	2 cut(s)	705, 766
Hpy99I	CGWCG	2 cut(s)	130, 869
HpyAV	CCTTC	3 cut(s)	223, 227, 772
HpyCH4III	ACNGT	3 cut(s)	49, 281, 447
HpyCH4IV	ACGT	1 cut(s)	994
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 1005
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	994
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	2 cut(s)	903, 971
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
LguI	GCTCTTC	2 cut(s)	651, 878
LmnI	GCTCC	3 cut(s)	35, 793, 817
Lsp1109I	GCAGC	5 cut(s)	125, 370, 453, 583, 664
LweI	GCATC	3 cut(s)	466, 705, 1008
MaeI	CTAG	5 cut(s)	14, 32, 110, 533, 857
MaeII	ACGT	1 cut(s)	994
MaeIII	GTNAC	2 cut(s)	589, 736
MalI	GATC	6 cut(s)	124, 152, 189, 633, 785, 801
MboI	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
MboII	GAAGA	8 cut(s)	212, 251, 485, 569, 638, 865, 950, 1000
MflI	RGATCY	3 cut(s)	187, 631, 783
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	8 cut(s)	95, 422, 539, 830, 935, 939, 977, 1009
MluI	ACGCGT	1 cut(s)	927
MlyI	GAGTC	2 cut(s)	128, 707
MmeI	TCCRAC	2 cut(s)	181, 297
MnlI	CCTC	4 cut(s)	116, 474, 698, 853
MroXI	GAANNNNTTC	3 cut(s)	204, 645, 957
MseI	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 938, 980
MspA1I	CMGCKG	2 cut(s)	148, 655
Mva1269I	GAATGC	1 cut(s)	852
MvnI	CGCG	2 cut(s)	804, 929
MwoI	GCNNNNNNNGC	2 cut(s)	17, 1005
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
NlaIII	CATG	2 cut(s)	903, 971
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	736
NruI	TCGCGA	1 cut(s)	804
NspI	RCATGY	1 cut(s)	971
PciI	ACATGT	1 cut(s)	967
PciSI	GCTCTTC	2 cut(s)	651, 878
PctI	GAATGC	1 cut(s)	852
PdmI	GAANNNNTTC	3 cut(s)	204, 645, 957
PfeI	GAWTC	4 cut(s)	42, 205, 485, 953
PkrI	GCNGC	5 cut(s)	115, 360, 468, 573, 654
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	2 cut(s)	128, 707
PpsI	GAGTC	2 cut(s)	128, 707
PscI	ACATGT	1 cut(s)	967
PshBI	ATTAAT	3 cut(s)	66, 938, 980
Psp124BI	GAGCTC	1 cut(s)	873
PspN4I	GGNNCC	1 cut(s)	278
PstNI	CAGNNNCTG	2 cut(s)	26, 655
PsuI	RGATCY	3 cut(s)	187, 631, 783
PvuI	CGATCG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	655
RruI	TCGCGA	1 cut(s)	804
RsaI	GTAC	4 cut(s)	56, 351, 765, 932
RsaNI	GTAC	4 cut(s)	55, 350, 764, 931
SacI	GAGCTC	1 cut(s)	873
SapI	GCTCTTC	2 cut(s)	651, 878
SaqAI	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 938, 980
SatI	GCNGC	5 cut(s)	114, 359, 467, 572, 653
Sau3AI	GATC	6 cut(s)	122, 150, 187, 631, 783, 799
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	2 cut(s)	128, 707
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	3 cut(s)	466, 705, 1008
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	8 cut(s)	95, 422, 539, 830, 935, 939, 977, 1009
SsiI	CCGC	2 cut(s)	146, 877
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	5 cut(s)	14, 32, 110, 533, 857
SstI	GAGCTC	1 cut(s)	873
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	3 cut(s)	49, 281, 447
TaiI	ACGT	1 cut(s)	997
TaqI	TCGA	4 cut(s)	125, 260, 420, 867
TasI	AATT	8 cut(s)	95, 422, 539, 830, 935, 939, 977, 1009
TatI	WGTACW	2 cut(s)	349, 763
TfiI	GAWTC	4 cut(s)	42, 205, 485, 953
Tru1I	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 938, 980
Tru9I	TTAA	8 cut(s)	66, 99, 330, 375, 435, 449, 938, 980
TscAI	CASTG	2 cut(s)	54, 516
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	5 cut(s)	113, 358, 466, 571, 652
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	5 cut(s)	242, 453, 581, 654, 966
TspRI	CASTG	2 cut(s)	54, 516
VspI	ATTAAT	3 cut(s)	66, 938, 980
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	1 cut(s)	704
XmnI	GAANNNNTTC	3 cut(s)	204, 645, 957
XspI	CTAG	5 cut(s)	14, 32, 110, 533, 857
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.