Rmu_co8255317.1_g000001

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8255317.1
Physical Location & Seq
Reverse (-)
2 .. 249
248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8255317.1_g000001.1.cds

Sequence Viewer

Length: 248 bp
atggccgagttagtcgcaggggctggtttaggaacagtgttcaccatgctctacgatgtggttaaggaatgcttagtagtgggcaagtttatgcagtttaaacccctcctcggagctctcaaatccaccttagactccattcaaccactcatcatccaaaagataggagaacacaacctgaaactgggtctcccaaatgatgaaatacaaaatctcgagaaacaaatgagggaggcggaaaagcttgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.17

Weight (kDa)

5.73

Isoelectric Point (pI)

18.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 110, 184
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 2 cut(s) 116, 244
AluI AGCT 2 cut(s) 116, 244
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 215
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 184
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 110, 184
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 110, 184
BsmAI GTCTC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 118
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 73, 130
BstF5I GGATG 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 23
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 5, 23, 116, 244
CviKI_1 RGCY 4 cut(s) 5, 23, 116, 244
DdeI CTNAG 2 cut(s) 73, 130
DraI TTTAAA 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 92
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 215, 217
Hpy8I GTNNAC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 2 cut(s) 73, 130
Hsp92II CATG 1 cut(s) 49
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 4 cut(s) 3, 9, 170, 191
MhlI GDGCHC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 4 cut(s) 116, 119, 222, 226
MseI TTAA 2 cut(s) 63, 99
MssI GTTTAAAC 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 215
PctI GAATGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 128
PmeI GTTTAAAC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 63, 99
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 118
SetI ASST 4 cut(s) 118, 131, 180, 246
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 1 cut(s) 236
SstI GAGCTC 1 cut(s) 118
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 216
Tru1I TTAA 2 cut(s) 63, 99
Tru9I TTAA 2 cut(s) 63, 99
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.