Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001601

Physical Location & Seq

Genomic Coordinates Reverse (-)

15599690 .. 15601064

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGGATCTTATTGGAGGGGCTGCCGTAGGACTAATATTTTCAGAGCTGTATAAGGGCGTTGAGAATCTGATAGAAAAGACTAAGAAGTTCAGCCCCCACCTCAAGGCAATCACGGCCACTGTAGACTCTTTGAAACCAGTGATCGACCAGATAGAGAAGCAAAACAAGGAACTGAATCTCTCAAACGAGGAGACAGAAAAGTTGAAAAAGATAATCTCCGACGGCATAAAACTGGTCGGCGACTGCTCGAAGAATCCAAAGTGGTACAGAAAGGCAAGCTATACAGATAAGATCACCGACTTGGACGAGGCTCTCAAAAGGCAGTTGGAAATACTCAAGGCGCAGGGGCTGAGGGATGGGAAGGAGACGCTGATTAGGGTTACGGAAATAAAGAAGTTGATCAACCAACTACAAGCCTCCTTATTACAAGCCTCGTGCTTGTTATTGGTGCTCATAATTTTTCTTATTTTGGTAAGTAGGGTCATGTTTAGCGTTCCTGGAGGAGTGAGAGAGCAGCAGCTTGCAACATCATCGGCGTCAGTGCCTGGAGGGGGTATAATATTGTCCCGTCCGGCGCGTTTGCAGTTAGGTTATTTTGTGGTCTGGTTATTTGGAAAACTTCTTGTGTATGCCGTCTATGGGGTCTTCGTTTGTATGGCCATTGGGATCGTCTGTGGTTGCGTCGAAGCTATTCAAGATCAGTATCGACTGGGTTTCTCCGGCCTGAAGCTCCCGGAATGGGATGAGCTTCGGGAATTGCCTATGATGATTGTCGGGCTGTGTATGTGCCTCTATCTTCTTAAGGGTCTTTTGGGGTTGACCAACTGGATTAATAAACAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

283

Amino Acids

31.33

Weight (kDa)

8.95

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15040 FvH4_5g03510 FvH4_5g03520 FvH4_5g03530 FvH4_5g03550
malus_domestica	MD02G1119400.v1.1
prunus_persica	Prupe.7G140300_v2.0.a1 Prupe.7G140400_v2.0.a1
pyrus_communis	pycom02g05540
rosa_chinensis	RchiOBHm_Chr2g0104371
rosa_laevigata	RLG00000004056 RLG00000004058 RLG00000004059 RLG00000017286
rosa_multiflora	Rmu_co8128798.1_g000001 Rmu_co8255317.1_g000001 Rmu_co8353357.1_g000001 Rmu_sc0003017.1_g000006 Rmu_sc0011198.1_g000003 Rmu_sc0011198.1_g000004 Rmu_sc0019298.1_g000002 Rmu_sc0019298.1_g000003 Rmu_ssc0000257.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139120 Rroxscaffold_3G00259700
rosa_rugosa	Rorug02G0120100 Rorug02G0120100 Rorug07G0030900 Rorug07G0031600 Rorug07G0031600
rosa_samantha	Rh2AG168600 Rh2AG170200 Rh2BG165600 Rh2BG175800 Rh2CG174600 Rh2CG175200 Rh2DG174100 Rh2DG176200 Rh7AG157000 Rh7AG157200 Rh7BG158700 Rh7BG158800 Rh7BG356200 Rh7CG162500 Rh7CG162700 Rh7DG157900 Rh7DG158000 Rh7DG158200
rosa_wichuraiana	Rw7G013410 Rw7G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	580
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	15, 677
AcoI	YGGCCR	2 cut(s)	117, 660
AcuI	CTGAAG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	106, 554, 642, 742
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	136, 208, 698
AjnI	CCWGG	2 cut(s)	499, 547
AluBI	AGCT	6 cut(s)	49, 282, 523, 692, 733, 751
AluI	AGCT	6 cut(s)	49, 282, 523, 692, 733, 751
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	188, 362
AlwI	GGATC	2 cut(s)	15, 677
AlwNI	CAGNNNCTG	2 cut(s)	352, 548
AoxI	GGCC	3 cut(s)	117, 660, 724
ApeKI	GCWGC	3 cut(s)	23, 517, 520
AseI	ATTAAT	1 cut(s)	834
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	2 cut(s)	346, 580
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	662
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	10, 529, 532
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	4 cut(s)	11, 132, 241, 620
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciT130I	CCWGG	2 cut(s)	501, 549
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	188, 362
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	803
BisI	GCNGC	3 cut(s)	24, 518, 521
BlsI	GCNGC	3 cut(s)	25, 519, 522
Bme1390I	CCNGG	3 cut(s)	501, 549, 737
BmrFI	CCNGG	3 cut(s)	501, 549, 737
BmrI	ACTGGG	1 cut(s)	722
BmuI	ACTGGG	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	2 cut(s)	522, 570
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	2 cut(s)	89, 323
BpuMI	CCSGG	1 cut(s)	737
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 554, 642, 742
Bse1I	ACTGG	4 cut(s)	140, 240, 717, 833
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	501, 549
BseGI	GGATG	2 cut(s)	364, 751
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	106, 554, 642, 742
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	4 cut(s)	140, 240, 717, 833
BseRI	GAGGAG	2 cut(s)	206, 519
BseXI	GCAGC	3 cut(s)	10, 529, 532
Bsh1236I	CGCG	1 cut(s)	580
BshFI	GGCC	3 cut(s)	119, 662, 726
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	3 cut(s)	575, 723, 737
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	4 cut(s)	106, 554, 642, 742
BsmAI	GTCTC	2 cut(s)	188, 362
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	3 cut(s)	119, 662, 726
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	119, 662, 726
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	580
BspPI	GGATC	2 cut(s)	15, 677
BspTI	CTTAAG	1 cut(s)	803
BsrI	ACTGG	4 cut(s)	140, 240, 717, 833
BssMI	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
BssNI	GRCGYC	1 cut(s)	539
BssSI	CACGAG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	501, 549
Bst4CI	ACNGT	2 cut(s)	124, 846
BstACI	GRCGYC	1 cut(s)	539
BstAFI	CTTAAG	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	280, 525
BstDEI	CTNAG	2 cut(s)	84, 353
BstF5I	GGATG	2 cut(s)	364, 751
BstFNI	CGCG	1 cut(s)	580
BstHHI	GCGC	2 cut(s)	346, 580
BstKTI	GATC	6 cut(s)	10, 147, 297, 405, 672, 703
BstMAI	GTCTC	2 cut(s)	188, 362
BstMBI	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	501, 549
BstSCI	CCNGG	3 cut(s)	499, 547, 735
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	580
BstV1I	GCAGC	3 cut(s)	10, 529, 532
BstV2I	GAAGAC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	119, 662, 726
BtsCI	GGATG	2 cut(s)	364, 751
BtsIMutI	CAGTG	3 cut(s)	120, 147, 549
Cac8I	GCNNGC	2 cut(s)	280, 525
CaiI	CAGNNNCTG	2 cut(s)	352, 548
CfoI	GCGC	2 cut(s)	346, 580
CseI	GACGC	3 cut(s)	379, 528, 673
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	487
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	84, 353
DpnI	GATC	6 cut(s)	9, 146, 296, 404, 671, 702
DpnII	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
EaeI	YGGCCR	2 cut(s)	117, 660
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	499, 547
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	1 cut(s)	490
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	24, 518, 521
FokI	GGATG	2 cut(s)	371, 758
Fsp4HI	GCNGC	3 cut(s)	24, 518, 521
GlaI	GCGC	2 cut(s)	345, 579
GluI	GCNGC	3 cut(s)	24, 518, 521
GsuI	CTGGAG	2 cut(s)	522, 570
HaeIII	GGCC	3 cut(s)	119, 662, 726
HapII	CCGG	3 cut(s)	575, 723, 737
HgaI	GACGC	3 cut(s)	379, 528, 673
HhaI	GCGC	2 cut(s)	346, 580
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	2 cut(s)	344, 578
HinP1I	GCGC	2 cut(s)	344, 578
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	4 cut(s)	67, 128, 178, 256
HpaII	CCGG	3 cut(s)	575, 723, 737
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	127, 822
Hpy188I	TCNGA	3 cut(s)	46, 72, 223
Hpy188III	TCNNGA	2 cut(s)	698, 755
Hpy8I	GTNNAC	2 cut(s)	127, 822
Hpy99I	CGWCG	2 cut(s)	227, 689
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	124, 846
HpyCH4V	TGCA	2 cut(s)	527, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	84, 353
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	2 cut(s)	344, 578
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	3 cut(s)	10, 529, 532
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	6 cut(s)	9, 146, 296, 404, 671, 702
MboI	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
MboII	GAAGA	3 cut(s)	265, 640, 791
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	2 cut(s)	459, 758
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	246, 309
Mox20I	TGGCCA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	2 cut(s)	804, 834
Msp20I	TGGCCA	1 cut(s)	662
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	3 cut(s)	575, 723, 737
MspR9I	CCNGG	3 cut(s)	501, 549, 737
MvaI	CCWGG	2 cut(s)	501, 549
MvnI	CGCG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
NlaIII	CATG	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	3 cut(s)	67, 178, 256
PfoI	TCCNGGA	2 cut(s)	499, 735
PkrI	GCNGC	3 cut(s)	25, 519, 522
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	499, 547
PspGI	CCWGG	2 cut(s)	499, 547
PstNI	CAGNNNCTG	2 cut(s)	352, 548
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	804, 834
SatI	GCNGC	3 cut(s)	24, 518, 521
Sau3AI	GATC	6 cut(s)	7, 144, 294, 402, 669, 700
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	501, 549, 737
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	8 cut(s)	51, 105, 284, 525, 595, 694, 735, 753
SfcI	CTRYAG	1 cut(s)	123
SmlI	CTYRAG	3 cut(s)	104, 338, 803
SmoI	CTYRAG	3 cut(s)	104, 338, 803
Sse9I	AATT	2 cut(s)	459, 758
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	2 cut(s)	39, 564
StyD4I	CCNGG	3 cut(s)	499, 547, 735
TaaI	ACNGT	2 cut(s)	124, 846
TaqI	TCGA	4 cut(s)	147, 251, 687, 709
TasI	AATT	2 cut(s)	459, 758
TfiI	GAWTC	3 cut(s)	67, 178, 256
Tru1I	TTAA	2 cut(s)	804, 834
Tru9I	TTAA	2 cut(s)	804, 834
TscAI	CASTG	3 cut(s)	127, 147, 549
TseI	GCWGC	3 cut(s)	23, 517, 520
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	127, 147, 549
Vha464I	CTTAAG	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	834
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.