Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007626

Physical Location & Seq

Genomic Coordinates Reverse (-)

54144250 .. 54150456

Gene Structure 6207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

ATGGAGCAGAAAGGTATACTGCTTTCGGCGTTGGGTGTGGGCATGGGGGTCGGAGTCGGTCTTGGGCTGGCTTCGGGTCAGACGATGAGCAAATGGGCCGGAAACGAGGGCTTGTCTAACGGCATAACTCCAGATAGGGTGGAGCAGGAGATGCTACGACAGATCGTTGATGGCAGAGACAGCAAGGTCACCTTCGACCAATTCCCTTATTACCTCAATGAACAGACTCGGGTGTTGTTAACGAGTGCGGCCTATGTCCATCTGAAGAGGGCTGAGGTTTCTAAGTACACCCGGAATCTTTCTCCGGCGAGTCGGGCTATTTTGCTCTCGGGGCCTGCTGAACTCTACCAACAACTGCTTGCCAAGGCTTTAGCCCATTACTTCCAAGCCAAGTTGCTGCTCTTAGATGTAACAGATTTTTCATTAAAGATTCAGAGCAAATATGGTACTGGCAATAAAGCATCTGCTTTTAAAAGGTCGACTTCGGAGATGACACTAGATCGGCTCTCTGGTCTATTTGGATCATTTTCAATTTTTCCTCAAAAGGAGGAACCCAAAGGCACATTACGAAGGCAAAGCAGCGGTGTGGATTTAGGATCCAGGGGACTGGAAGGTTCTAAAAATGCTCCAAAGCTTCGTAGAAATGCTTCTGCTGCAGCTAATATCAGTAACCTGGCTTCTCAGGGAACTCCTTCAAATCCAGCTTCTCTTAAGCGCACAAGCAGCTGGTCTTTTGATGAAAGACTTTTCATACAGTCCCTGTACAAGGTCTTGGTTTATGTTTCAAAAACCACTCCCATTGTGCTGTATCTGAGGGACATCGACAACATCTTATCTAGATCTCAAAGGATATATAACTTGTTCCAGAAAATGTTGGATAAATTATCCGGAGCTGTGCTGATCCTTGGTTCCCGAATTGTGGATTTGGATAATGACTACAGAGACGTTGATGACAGGCTTACCGCACTTTTCCCTTACAACATTGAGATCAGACCTCCTGAAAATGAGTCACATCTTGTTAGCTGGAAGACTCAACTAGAGGAAGATATGAAGATGATTCAGGTTCAGGATAACAAAAACCACATTATGGAAGTCCTTTCAGCTAATGATCTCGACTGTGATGATCTAGGTTCAATTTGCATTGCTGACACAATGGATCTCAGTCACTACATAGAAGAGATTGTGGTATCAGCTGTTTCTTATCATTTAATGAATAACAGAGATCCTGAATATAGAAATGGAAAACTTGTGATTTCATCCAAGAGTTTGTCTCATGGATTAAGTATATTCCAAGAGGGAAAGTTCGGTGGCAAAGCTACAATGAAGCTGGAAGCACAGGCCGAATTTTCCAAGGAAGCAGGAAAGGAAGGGGCTGCTGGTGCGAATCCGGAAACAAAAGCTGAAAGCACTGCTCCTGAGAAAAAAGTTGGAGCAGAGACGGTAGCTTCATTGGTAAAACCAGAACCTTTAACCACAAAAACAGAATCTTCTGCACCAAAAACAGATGCTGACAATCCAGTCCCAGCTTTTAAAGCTCCTGAAGTTCCCGATAATGAATTTGAGAAGCGAATAAGACCAGAGGTTATACCAGCCGATGAGATTGGTGTAACATTTTCTGATATCGGTGCTCTGGAGGAGATTAAAGAATCCCTTCAAGAATTAGTAATGCTCCCACTGCGGAGGCCAGATCTTTTCAATGGAGGCCTTTTAAAGCCTTGTAGAGGTATATTGCTATTTGGTCCACCTGGTAGTGGGAAGACTATGCTGGCAAAGGCCATTGCTAGGGAGGCTGGAGCTAGCTTCATCAATGTATCCATGTCTACCATTACTTCCAAATGGTTTGGTGAAGATGAGAAAAATGTCCGAGCTTTGTTCACACTAGCATCCAAAGTCTCTCCAACTATCATCTTTGTGGATGAAGTTGACAGCATGCTTGGGCAGAGAACCCGAGTGGGAGAGCATGAAGCCATGCGAAAGATAAAGAATGAATTTATGACTCATTGGGATGGTCTCATGACTAAACAAGGGGAGCGGATCCTTGTCCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATTAGGCGTTTTGAACGGAGAATATTGGTTGGGCTACCAACTAAAGAGAACAGAGAAATGATCATGAGGACTCTGCTGTCAAAAGAGAAGGTGGATGACCAGCTAGATTTCAAGGAGCTTGCAACTATGACTGAAGGATATAGTGGAAGTGATCTTAAGAATTTGTGCACCACAGCTGCCTATCGGCCTGTTAGGGAGTTAATACAGGCAGAGAGACAAAAGGATTTGGAGAAAAAGAAGAGAGCTGCAGAAAGACAAAATCAACAAGATGCTTCTGAAGAACGAAATCCAGAAGCCGTCTCGGATACAAAAGAACAGAAAGAGGCAAGAGTGATCACCCTCAGGCCCCTTAATATGGAAGACTTCCGGCAGGCAAAGAATCAAGTTGCAGCTAGCTTTGCAGCTGAGGGAGCTAGTATGAATGAATTGAAGCAGTGGAATGACCTATATGGGGAAGGGGGTCGAGAAAGAAGGAGCAGTTGTCTTATTTCCTATGAGACTGTTGATAGAACCTATACATTTCCACTTTGGATTATGGCCGAGTTAGTCGCAGGGGCTGGTTTAGGAACAGTGTTCACCATGCTCTACGATGTGGTTAAGGAAGGCTTAGTAGTGGGCAAGTTTATGCAGTTTAAACCCCTCCTCGGAGCTCTCAAATCCACCTTAGACTCCATTCAACCACTCATCATCCAACAGATAGGAGAACACAACCTGAAACTGGGTCTCCCAAACGATGAAATACAAAATCTCGAGAAACAAATGAGGGAGGCGGAAAAGCTTGTTGTCAAGCTCTCCAAGCTTCAGATGTGGAACCGCATCAAGTCTCGTTACACAGACCAACTTGTGGAGTTGGATGGAACTCTGAAACGGCTCTTGAAACAGGTGTTGATGCAGCAAGCGAGGGACGTTAAGGAGAACTTGATGGTGGCAAAGGAAACTGCGCAACAACTTGTTGAGATGCAAGAGTTCAATGAGAGACTGCTGAAGGAACGGACGCTGCAGCAGGAAGAAGCGAGAGATCTGCAGGACAAGTTTGTTTCGGCACTCCAAAACAACGCTAAACAGCTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017076 GO:0017111 GO:0019867 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

1052

Amino Acids

117.75

Weight (kDa)

6.66

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	371 - 431	1.8e-34	Domain of unknown function (DUF7751)
AAA	PF00004	576 - 706	7.1e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	730 - 773	2.2e-14	AAA+ lid domain
RPW8	PF05659	875 - 1012	2.5e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64110 AT1G64110 AT1G64110 AT1G64110 AT1G64110
fragaria_vesca	FvH4_5g03560 FvH4_5g03560 FvH4_5g03560 FvH4_5g03560
malus_domestica	MD06G1095300.v1.1 MD14G1115400.v1.1
prunus_persica	Prupe.5G110200_v2.0.a1
pyrus_communis	pycom06g09190
rosa_chinensis	RchiOBHm_Chr7g0196151
rosa_laevigata	RLG00000004060
rosa_roxburghii	Rroxscaffold_3G00259730
rosa_rugosa	Rorug07G0030900 Rorug07G0030900 Rorug07G0030900
rosa_samantha	Rh7AG156900 Rh7BG158600 Rh7CG162400 Rh7DG157800
rosa_wichuraiana	Rw7G013400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	185, 1517, 2161
Acc16I	TGCGCA	1 cut(s)	3027
AccB7I	CCANNNNNTGG	2 cut(s)	1087, 2929
AccBSI	CCGCTC	1 cut(s)	2032
AccI	GTMKAC	3 cut(s)	16, 479, 1820
AccIII	TCCGGA	2 cut(s)	887, 1387
AciI	CCGC	7 cut(s)	248, 582, 963, 1678, 2032, 2855, 2899
AclWI	GGATC	8 cut(s)	529, 591, 604, 895, 1164, 1217, 2029, 2042
AcoI	YGGCCR	1 cut(s)	2622
AcsI	RAATTY	4 cut(s)	1343, 1556, 1988, 2245
AcuI	CTGAAG	6 cut(s)	284, 1560, 2238, 2382, 2870, 3089
AfaI	GTAC	3 cut(s)	287, 448, 764
AflII	CTTAAG	2 cut(s)	710, 2240
AjnI	CCWGG	3 cut(s)	599, 672, 1744
Alw21I	GWGCWC	3 cut(s)	1630, 2255, 2737
Alw44I	GTGCAC	1 cut(s)	2251
AlwI	GGATC	8 cut(s)	529, 591, 604, 895, 1164, 1217, 2029, 2042
AlwNI	CAGNNNCTG	3 cut(s)	760, 1508, 2642
Ama87I	CYCGRG	4 cut(s)	228, 328, 1947, 2834
Aor13HI	TCCGGA	2 cut(s)	887, 1387
ApaLI	GTGCAC	1 cut(s)	2251
ApoI	RAATTY	4 cut(s)	1343, 1556, 1988, 2245
Asp700I	GAANNNNTTC	3 cut(s)	646, 691, 1650
AspLEI	GCGC	2 cut(s)	717, 3028
AspS9I	GGNCC	4 cut(s)	96, 332, 1739, 2430
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	4 cut(s)	181, 1856, 2413, 2653
AsuNHI	GCTAGC	2 cut(s)	1796, 2477
AvaI	CYCGRG	4 cut(s)	228, 328, 1947, 2834
AvaII	GGWCC	1 cut(s)	1739
AxyI	CCTNAGG	1 cut(s)	2426
BaeGI	GKGCMC	1 cut(s)	2255
BamHI	GGATCC	2 cut(s)	596, 2034
BanII	GRGCYC	1 cut(s)	2737
BarI	GAAGNNNNNNTAC	4 cut(s)	631, 661, 663, 693
BbsI	GAAGAC	3 cut(s)	1034, 1763, 2451
Bbv12I	GWGCWC	3 cut(s)	1630, 2255, 2737
BbvCI	CCTCAGC	2 cut(s)	273, 2490
BccI	CCATC	5 cut(s)	164, 267, 2000, 2933, 3001
BceAI	ACGGC	3 cut(s)	136, 2366, 2969
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 3088, 3122
BciT130I	CCWGG	3 cut(s)	601, 674, 1746
BciVI	GTATCC	2 cut(s)	1822, 2383
BclI	TGATCA	2 cut(s)	2145, 2418
BcnI	CCSGG	1 cut(s)	292
BfmI	CTRYAG	5 cut(s)	654, 937, 2331, 3083, 3107
BfrI	CTTAAG	2 cut(s)	710, 2240
BfuI	GTATCC	2 cut(s)	1822, 2383
BglII	AGATCT	3 cut(s)	839, 1687, 3103
Bme1390I	CCNGG	4 cut(s)	292, 601, 674, 1746
Bme18I	GGWCC	1 cut(s)	1739
BmeT110I	CYCGRG	4 cut(s)	228, 328, 1947, 2834
BmgT120I	GGNCC	4 cut(s)	96, 332, 1739, 2430
BmiI	GGNNCC	7 cut(s)	333, 552, 598, 910, 2036, 2432, 2897
BmrFI	CCNGG	4 cut(s)	292, 601, 674, 1746
BmrI	ACTGGG	1 cut(s)	2813
BmsI	GCATC	8 cut(s)	141, 470, 1495, 1892, 2344, 2910, 2964, 3033
BmtI	GCTAGC	2 cut(s)	1800, 2481
BmuI	ACTGGG	1 cut(s)	2813
BpiI	GAAGAC	3 cut(s)	1034, 1763, 2451
BplI	GAGNNNNNCTC	2 cut(s)	1255, 1287
BpmI	CTGGAG	3 cut(s)	114, 1652, 1812
Bpu10I	CCTNAGC	2 cut(s)	273, 2490
BpuMI	CCSGG	1 cut(s)	292
BsaI	GGTCTC	2 cut(s)	2015, 2813
BsaJI	CCNNGG	5 cut(s)	363, 600, 904, 1350, 2728
BsaWI	WCCGGW	2 cut(s)	887, 1387
BsaXI	ACNNNNNCTCC	4 cut(s)	2551, 2581, 2793, 2823
Bse1I	ACTGG	4 cut(s)	454, 612, 1517, 2808
Bse21I	CCTNAGG	1 cut(s)	2426
Bse3DI	GCAATG	2 cut(s)	1140, 1776
BseAI	TCCGGA	2 cut(s)	887, 1387
BseBI	CCWGG	3 cut(s)	601, 674, 1746
BseDI	CCNNGG	5 cut(s)	363, 600, 904, 1350, 2728
BseGI	GGATG	7 cut(s)	1256, 1883, 1921, 2011, 2185, 2772, 2944
BseMI	GCAATG	2 cut(s)	1140, 1776
BseMII	CTCAG	7 cut(s)	264, 695, 803, 1174, 1407, 2440, 2481
BseNI	ACTGG	4 cut(s)	454, 612, 1517, 2808
BseRI	GAGGAG	2 cut(s)	1649, 2717
BseSI	GKGCMC	1 cut(s)	2255
BseYI	CCCAGC	1 cut(s)	1522
BsgI	GTGCAG	1 cut(s)	1476
BsiHKAI	GWGCWC	3 cut(s)	1630, 2255, 2737
BsiHKCI	CYCGRG	4 cut(s)	228, 328, 1947, 2834
BsiSI	CCGG	6 cut(s)	99, 292, 305, 888, 1388, 2452
BslFI	GGGAC	5 cut(s)	618, 742, 830, 1505, 3002
BsmBI	CGTCTC	3 cut(s)	936, 1430, 2389
BsmFI	GGGAC	5 cut(s)	618, 742, 830, 1505, 3002
Bso31I	GGTCTC	2 cut(s)	2015, 2813
BsoBI	CYCGRG	4 cut(s)	228, 328, 1947, 2834
Bsp1286I	GDGCHC	3 cut(s)	1630, 2255, 2737
Bsp13I	TCCGGA	2 cut(s)	887, 1387
Bsp1407I	TGTACA	1 cut(s)	762
BspACI	CCGC	7 cut(s)	248, 582, 963, 1678, 2032, 2855, 2899
BspCNI	CTCAG	7 cut(s)	265, 694, 804, 1173, 1408, 2439, 2482
BspEI	TCCGGA	2 cut(s)	887, 1387
BspHI	TCATGA	2 cut(s)	2013, 2148
BspLI	GGNNCC	7 cut(s)	333, 552, 598, 910, 2036, 2432, 2897
BspMAI	CTGCAG	4 cut(s)	658, 2335, 3087, 3111
BspOI	GCTAGC	2 cut(s)	1800, 2481
BspPI	GGATC	8 cut(s)	529, 591, 604, 895, 1164, 1217, 2029, 2042
BspTI	CTTAAG	2 cut(s)	710, 2240
BspTNI	GGTCTC	2 cut(s)	2015, 2813
BsrBI	CCGCTC	1 cut(s)	2032
BsrDI	GCAATG	2 cut(s)	1140, 1776
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	4 cut(s)	454, 612, 1517, 2808
BssECI	CCNNGG	5 cut(s)	363, 600, 904, 1350, 2728
BssNAI	GTATAC	1 cut(s)	17
BssT1I	CCWWGG	3 cut(s)	363, 904, 1350
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	601, 674, 1746
Bst4CI	ACNGT	5 cut(s)	756, 1118, 1441, 2587, 2656
Bst6I	CTCTTC	3 cut(s)	260, 1170, 2318
BstAFI	CTTAAG	2 cut(s)	710, 2240
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	187
BstENI	CCTNNNNNAGG	2 cut(s)	764, 1719
BstF5I	GGATG	7 cut(s)	1256, 1883, 1921, 2011, 2185, 2772, 2944
BstHHI	GCGC	2 cut(s)	717, 3028
BstNI	CCWGG	3 cut(s)	601, 674, 1746
BstNSI	RCATGY	1 cut(s)	1933
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	4 cut(s)	290, 599, 672, 1744
BstSFI	CTRYAG	5 cut(s)	654, 937, 2331, 3083, 3107
BstSLI	GKGCMC	1 cut(s)	2255
BstV2I	GAAGAC	3 cut(s)	1034, 1763, 2451
BstX2I	RGATCY	7 cut(s)	596, 839, 1156, 1222, 1687, 2034, 3103
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	7 cut(s)	596, 839, 1156, 1222, 1687, 2034, 3103
BstZ17I	GTATAC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	2426
BsuI	GTATCC	2 cut(s)	1822, 2383
BtsCI	GGATG	7 cut(s)	1256, 1883, 1921, 2011, 2185, 2772, 2944
BtsI	GCAGTG	3 cut(s)	1407, 1673, 2525
BtsIMutI	CAGTG	4 cut(s)	1407, 1673, 2525, 2661
CaiI	CAGNNNCTG	3 cut(s)	760, 1508, 2642
CciI	TCATGA	2 cut(s)	2013, 2148
CfoI	GCGC	2 cut(s)	717, 3028
Cfr13I	GGNCC	4 cut(s)	96, 332, 1739, 2430
CseI	GACGC	1 cut(s)	3088
CsiI	ACCWGGT	1 cut(s)	1744
Csp6I	GTAC	3 cut(s)	286, 447, 763
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	9 cut(s)	43, 1274, 1816, 1930, 1961, 1969, 2014, 2149, 2665
CviQI	GTAC	3 cut(s)	286, 447, 763
DraI	TTTAAA	4 cut(s)	472, 1531, 1710, 2719
DrdI	GACNNNNNNGTC	3 cut(s)	185, 1517, 2161
DseDI	GACNNNNNNGTC	3 cut(s)	185, 1517, 2161
EaeI	YGGCCR	1 cut(s)	2622
Eam1104I	CTCTTC	3 cut(s)	260, 1170, 2318
EarI	CTCTTC	3 cut(s)	260, 1170, 2318
EciI	GGCGGA	1 cut(s)	2870
Ecl136II	GAGCTC	1 cut(s)	2735
Eco130I	CCWWGG	3 cut(s)	363, 904, 1350
Eco147I	AGGCCT	1 cut(s)	1704
Eco24I	GRGCYC	1 cut(s)	2737
Eco31I	GGTCTC	2 cut(s)	2015, 2813
Eco32I	GATATC	1 cut(s)	1621
Eco47I	GGWCC	1 cut(s)	1739
Eco53kI	GAGCTC	1 cut(s)	2735
Eco57I	CTGAAG	6 cut(s)	284, 1560, 2238, 2382, 2870, 3089
Eco81I	CCTNAGG	1 cut(s)	2426
Eco88I	CYCGRG	4 cut(s)	228, 328, 1947, 2834
Eco91I	GGTNACC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	2735
EcoNI	CCTNNNNNAGG	2 cut(s)	764, 1719
EcoO109I	RGGNCCY	2 cut(s)	332, 2430
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	599, 672, 1744
EcoRV	GATATC	1 cut(s)	1621
EcoT14I	CCWWGG	3 cut(s)	363, 904, 1350
EcoT38I	GRGCYC	1 cut(s)	2737
ErhI	CCWWGG	3 cut(s)	363, 904, 1350
Esp3I	CGTCTC	3 cut(s)	936, 1430, 2389
FaeI	CATG	9 cut(s)	46, 1277, 1819, 1933, 1964, 1972, 2017, 2152, 2668
FaqI	GGGAC	5 cut(s)	618, 742, 830, 1505, 3002
FatI	CATG	9 cut(s)	42, 1273, 1815, 1929, 1960, 1968, 2013, 2148, 2664
FbaI	TGATCA	2 cut(s)	2145, 2418
FblI	GTMKAC	3 cut(s)	16, 479, 1820
FokI	GGATG	7 cut(s)	1243, 1870, 1928, 2018, 2192, 2759, 2951
FriOI	GRGCYC	1 cut(s)	2737
FspI	TGCGCA	1 cut(s)	3027
GlaI	GCGC	2 cut(s)	716, 3027
GsaI	CCCAGC	1 cut(s)	1526
GsuI	CTGGAG	3 cut(s)	114, 1652, 1812
HapII	CCGG	6 cut(s)	99, 292, 305, 888, 1388, 2452
HgaI	GACGC	1 cut(s)	3088
HhaI	GCGC	2 cut(s)	717, 3028
Hin1II	CATG	9 cut(s)	46, 1277, 1819, 1933, 1964, 1972, 2017, 2152, 2668
Hin6I	GCGC	2 cut(s)	715, 3026
HinP1I	GCGC	2 cut(s)	715, 3026
HincII	GTYRAC	3 cut(s)	240, 480, 1924
HindII	GTYRAC	3 cut(s)	240, 480, 1924
HindIII	AAGCTT	3 cut(s)	632, 2861, 2882
HpaI	GTTAAC	1 cut(s)	240
HpaII	CCGG	6 cut(s)	99, 292, 305, 888, 1388, 2452
HphI	GGTGA	4 cut(s)	181, 1856, 2413, 2653
HpyCH4III	ACNGT	5 cut(s)	756, 1118, 1441, 2587, 2656
HpyCH4IV	ACGT	2 cut(s)	945, 2991
HpySE526I	ACGT	2 cut(s)	945, 2991
Hsp92II	CATG	9 cut(s)	46, 1277, 1819, 1933, 1964, 1972, 2017, 2152, 2668
HspAI	GCGC	2 cut(s)	715, 3026
Kpn2I	TCCGGA	2 cut(s)	887, 1387
Ksp22I	TGATCA	2 cut(s)	2145, 2418
KspAI	GTTAAC	1 cut(s)	240
LweI	GCATC	8 cut(s)	141, 470, 1495, 1892, 2344, 2910, 2964, 3033
MabI	ACCWGGT	1 cut(s)	1744
MaeII	ACGT	2 cut(s)	945, 2991
MaeIII	GTNAC	7 cut(s)	187, 409, 668, 1008, 1163, 1606, 2912
MbiI	CCGCTC	1 cut(s)	2032
MflI	RGATCY	7 cut(s)	596, 839, 1156, 1222, 1687, 2034, 3103
MhlI	GDGCHC	3 cut(s)	1630, 2255, 2737
MlyI	GAGTC	8 cut(s)	63, 220, 319, 1016, 1024, 1990, 2149, 2747
MmeI	TCCRAC	6 cut(s)	31, 855, 1408, 1922, 2800, 2916
MroI	TCCGGA	2 cut(s)	887, 1387
MroXI	GAANNNNTTC	3 cut(s)	646, 691, 1650
MslI	CAYNNNNRTG	2 cut(s)	1910, 2004
MspA1I	CMGCKG	5 cut(s)	582, 726, 1193, 2261, 2489
MspCI	CTTAAG	2 cut(s)	710, 2240
MspI	CCGG	6 cut(s)	99, 292, 305, 888, 1388, 2452
MspR9I	CCNGG	4 cut(s)	292, 601, 674, 1746
MssI	GTTTAAAC	1 cut(s)	2719
MvaI	CCWGG	3 cut(s)	601, 674, 1746
NciI	CCSGG	1 cut(s)	292
NheI	GCTAGC	2 cut(s)	1796, 2477
NlaIII	CATG	9 cut(s)	46, 1277, 1819, 1933, 1964, 1972, 2017, 2152, 2668
NlaIV	GGNNCC	7 cut(s)	333, 552, 598, 910, 2036, 2432, 2897
NmeAIII	GCCGAG	1 cut(s)	2650
NmuCI	GTSAC	3 cut(s)	187, 1008, 1163
NsbI	TGCGCA	1 cut(s)	3027
NspI	RCATGY	1 cut(s)	1933
PaeI	GCATGC	1 cut(s)	1933
PaeR7I	CTCGAG	1 cut(s)	2834
PagI	TCATGA	2 cut(s)	2013, 2148
PceI	AGGCCT	1 cut(s)	1704
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PdmI	GAANNNNTTC	3 cut(s)	646, 691, 1650
PfeI	GAWTC	7 cut(s)	295, 430, 1057, 1384, 1484, 1646, 2464
PflMI	CCANNNNNTGG	2 cut(s)	1087, 2929
PleI	GAGTC	8 cut(s)	62, 220, 318, 1015, 1024, 1990, 2149, 2747
PmeI	GTTTAAAC	1 cut(s)	2719
PpsI	GAGTC	8 cut(s)	62, 220, 318, 1015, 1024, 1990, 2149, 2747
Psp124BI	GAGCTC	1 cut(s)	2737
Psp6I	CCWGG	3 cut(s)	599, 672, 1744
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	1522
PspGI	CCWGG	3 cut(s)	599, 672, 1744
PspN4I	GGNNCC	7 cut(s)	333, 552, 598, 910, 2036, 2432, 2897
PspPI	GGNCC	4 cut(s)	96, 332, 1739, 2430
PstI	CTGCAG	4 cut(s)	658, 2335, 3087, 3111
PstNI	CAGNNNCTG	3 cut(s)	760, 1508, 2642
PsuI	RGATCY	7 cut(s)	596, 839, 1156, 1222, 1687, 2034, 3103
PvuII	CAGCTG	4 cut(s)	726, 1193, 2261, 2489
RsaI	GTAC	3 cut(s)	287, 448, 764
RsaNI	GTAC	3 cut(s)	286, 447, 763
RseI	CAYNNNNRTG	2 cut(s)	1910, 2004
SacI	GAGCTC	1 cut(s)	2737
SalI	GTCGAC	1 cut(s)	478
Sau96I	GGNCC	4 cut(s)	96, 332, 1739, 2430
SchI	GAGTC	8 cut(s)	63, 220, 319, 1016, 1024, 1990, 2149, 2747
ScrFI	CCNGG	4 cut(s)	292, 601, 674, 1746
SduI	GDGCHC	3 cut(s)	1630, 2255, 2737
SexAI	ACCWGGT	1 cut(s)	1744
SfaNI	GCATC	8 cut(s)	141, 470, 1495, 1892, 2344, 2910, 2964, 3033
SfcI	CTRYAG	5 cut(s)	654, 937, 2331, 3083, 3107
Sfr274I	CTCGAG	1 cut(s)	2834
SinI	GGWCC	1 cut(s)	1739
SlaI	CTCGAG	1 cut(s)	2834
SmiMI	CAYNNNNRTG	2 cut(s)	1910, 2004
SmlI	CTYRAG	3 cut(s)	710, 2240, 2834
SmoI	CTYRAG	3 cut(s)	710, 2240, 2834
SphI	GCATGC	1 cut(s)	1933
SseBI	AGGCCT	1 cut(s)	1704
SsiI	CCGC	7 cut(s)	248, 582, 963, 1678, 2032, 2855, 2899
SspI	AATATT	1 cut(s)	2109
SstI	GAGCTC	1 cut(s)	2737
StuI	AGGCCT	1 cut(s)	1704
StyD4I	CCNGG	4 cut(s)	290, 599, 672, 1744
StyI	CCWWGG	3 cut(s)	363, 904, 1350
TaaI	ACNGT	5 cut(s)	756, 1118, 1441, 2587, 2656
TaiI	ACGT	2 cut(s)	948, 2994
TaqI	TCGA	6 cut(s)	195, 479, 822, 1113, 2548, 2835
TaqII	GACCGA	1 cut(s)	47
TatI	WGTACW	2 cut(s)	285, 762
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	7 cut(s)	295, 430, 1057, 1384, 1484, 1646, 2464
TscAI	CASTG	4 cut(s)	1414, 1680, 2525, 2661
TseFI	GTSAC	3 cut(s)	187, 1008, 1163
Tsp45I	GTSAC	3 cut(s)	187, 1008, 1163
TspGWI	ACGGA	2 cut(s)	2116, 3091
TspRI	CASTG	4 cut(s)	1414, 1680, 2525, 2661
Van91I	CCANNNNNTGG	2 cut(s)	1087, 2929
Vha464I	CTTAAG	2 cut(s)	710, 2240
VneI	GTGCAC	1 cut(s)	2251
VpaK11BI	GGWCC	1 cut(s)	1739
XagI	CCTNNNNNAGG	2 cut(s)	764, 1719
XapI	RAATTY	4 cut(s)	1343, 1556, 1988, 2245
XbaI	TCTAGA	1 cut(s)	836
XceI	RCATGY	1 cut(s)	1933
XhoI	CTCGAG	1 cut(s)	2834
XmiI	GTMKAC	3 cut(s)	16, 479, 1820
XmnI	GAANNNNTTC	3 cut(s)	646, 691, 1650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.