Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004643

Physical Location & Seq

Genomic Coordinates Forward (+)

20965560 .. 20966165

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1132000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCCACCACAACACATGATGGTCTTCCGCCACTTCACACCCACAAATCCTCTCGTCGAACCACCGCGAACCGTGTATTTGTGGTGGTTCACTTTAGTGCCATCTTAGCCCTGCTCTATCGCCATACACTCTCCCTCCTTCACTCCACAACCCTCACCTCTTTCTTCATCACCCTCACCTTCCTCATCTCGGACACTCTTCTAGCTTTCATGTACACCACTACACAATCTGTTCGCATGAAACCAATTTATCGCACCGAATTCCCTGAAAACCTCAAAAGGGTTGTTCAAGAACCTGATTTTCCAGCTCTGGACGTGTTCATATGCACAGCTGATCCCTATAAGGAGCCACCAATGAACGTGGTGAACACGGCCTTATCGGTCATGGCTTATGATTATCCAACCGAGAAGGTGTCGGTGTATGTTTCAGACGATGGCGGCTCAGCTCTGACTCTCTTTGCTTTCATGGAGGCTGCCAAATTTGCAAGCCACTGGCTACCTTTCTGCAGGAACAACAACATAGTGGGACGCTGCCCGGAAGCTTATTTTGAAACGGATCATTCTCGGTCTCCTGAAGCTGAGAAGATAAAGGTAAAAAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

202

Amino Acids

22.84

Weight (kDa)

7.78

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	104 - 187	1.1e-29	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23990 AT4G23990 AT4G24000 AT4G24000 AT4G24010
fragaria_vesca	FvH4_5g11680
malus_domestica	MD14G1132000.v1.1 MD14G1132200.v1.1 MD14G1132300.v1.1
prunus_persica	Prupe.5G123500_v2.0.a1 Prupe.5G123600_v2.0.a1 Prupe.5G123700_v2.0.a1 Prupe.5G123800_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1
pyrus_communis	pycom06g10420
rosa_chinensis	RchiOBHm_Chr7g0186101
rosa_laevigata	RLG00000004864
rosa_multiflora	Rmu_co8339917.1_g000001 Rmu_sc0000194.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268430
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069600 Rh7BG085500 Rh7CG078600 Rh7DG078600
rosa_wichuraiana	Rw7G006540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	29, 66, 438
AclWI	GGATC	2 cut(s)	329, 564
AcsI	RAATTY	3 cut(s)	260, 479, 599
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	190, 280
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	290, 551
AjiI	CACGTC	1 cut(s)	316
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	6 cut(s)	206, 308, 332, 446, 542, 578
AluI	AGCT	6 cut(s)	206, 308, 332, 446, 542, 578
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	2 cut(s)	329, 564
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	473, 531
ApoI	RAATTY	3 cut(s)	260, 479, 599
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	4 cut(s)	148, 163, 169, 376
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	460, 518
BccI	CCATC	3 cut(s)	14, 110, 428
BceAI	ACGGC	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	203, 604
BfmI	CTRYAG	1 cut(s)	505
BisI	GCNGC	3 cut(s)	439, 474, 532
BlpI	GCTNAGC	1 cut(s)	442
BlsI	GCNGC	3 cut(s)	440, 475, 533
Bme1390I	CCNGG	1 cut(s)	536
BmgBI	CACGTC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	17
Bpu1102I	GCTNAGC	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 280
Bse1I	ACTGG	1 cut(s)	497
BseLI	CCNNNNNNNGG	2 cut(s)	190, 280
BseMII	CTCAG	2 cut(s)	456, 570
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	460, 518
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	190, 280
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	1 cut(s)	374
Bso31I	GGTCTC	1 cut(s)	573
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	334, 556
Bsp1720I	GCTNAGC	1 cut(s)	442
BspACI	CCGC	3 cut(s)	29, 66, 438
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	455, 571
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	509
BspPI	GGATC	2 cut(s)	329, 564
BspTNI	GGTCTC	1 cut(s)	573
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	2 cut(s)	334, 556
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	3 cut(s)	106, 442, 579
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	337, 559
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	2 cut(s)	334, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 482
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	460, 518
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	374
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	487
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	5 cut(s)	17, 211, 238, 385, 466
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	106, 442, 579
DpnI	GATC	2 cut(s)	336, 558
DpnII	GATC	2 cut(s)	334, 556
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	260
FaeI	CATG	5 cut(s)	20, 214, 241, 388, 469
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	5 cut(s)	16, 210, 237, 384, 465
FauNDI	CATATG	1 cut(s)	323
Fnu4HI	GCNGC	3 cut(s)	439, 474, 532
Fsp4HI	GCNGC	3 cut(s)	439, 474, 532
FspBI	CTAG	2 cut(s)	203, 604
GluI	GCNGC	3 cut(s)	439, 474, 532
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	536
HgaI	GACGC	1 cut(s)	537
Hin1II	CATG	5 cut(s)	20, 214, 241, 388, 469
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	4 cut(s)	148, 163, 169, 376
Hpy166II	GTNNAC	4 cut(s)	6, 91, 216, 367
Hpy188I	TCNGA	3 cut(s)	193, 430, 450
Hpy188III	TCNNGA	3 cut(s)	290, 311, 572
Hpy8I	GTNNAC	4 cut(s)	6, 91, 216, 367
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	149, 190, 403
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	315, 360
HpyCH4V	TGCA	3 cut(s)	327, 485, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 482
HpyF3I	CTNAG	3 cut(s)	106, 442, 579
HpySE526I	ACGT	2 cut(s)	315, 360
Hsp92II	CATG	5 cut(s)	20, 214, 241, 388, 469
Kzo9I	GATC	2 cut(s)	334, 556
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	125, 279, 296, 309, 318, 478, 493, 549, 585
Lsp1109I	GCAGC	2 cut(s)	460, 518
MaeI	CTAG	2 cut(s)	203, 604
MaeII	ACGT	2 cut(s)	315, 360
MalI	GATC	2 cut(s)	336, 558
MboI	GATC	2 cut(s)	334, 556
MboII	GAAGA	4 cut(s)	17, 157, 191, 595
MluCI	AATT	4 cut(s)	246, 260, 479, 599
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	8 cut(s)	61, 146, 164, 169, 185, 194, 284, 463
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	107, 482
NciI	CCSGG	1 cut(s)	536
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	2 cut(s)	334, 556
NlaIII	CATG	5 cut(s)	20, 214, 241, 388, 469
NlaIV	GGNNCC	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	440, 475, 533
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	3 cut(s)	439, 474, 532
Sau3AI	GATC	2 cut(s)	334, 556
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	536
SfcI	CTRYAG	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	4 cut(s)	246, 260, 479, 599
SsiI	CCGC	3 cut(s)	29, 66, 438
SspMI	CTAG	2 cut(s)	203, 604
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	318, 363
TaqI	TCGA	1 cut(s)	58
TaqII	GACCGA	2 cut(s)	370, 555
TasI	AATT	4 cut(s)	246, 260, 479, 599
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	441
TscAI	CASTG	1 cut(s)	497
TseI	GCWGC	2 cut(s)	473, 531
TspDTI	ATGAA	6 cut(s)	157, 199, 254, 310, 371, 454
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	497
XapI	RAATTY	3 cut(s)	260, 479, 599
XspI	CTAG	2 cut(s)	203, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.