Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339917.1

Orthogroup ID

OG0004643

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 829

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

gtctcggagccatggtttttgttgtacgtcttccttttcattggatcctatatccaaaactgcctagactttgtggtagaaggaggaacattcccaaagtggtggaatgaccaaagaatgtggatgattagggcactctcatccttcttgtttggatccatagagtaccttctcatgtccttgggcatttccacccatgggttcaatgtgactagcaaagtccttgatgaagaccaaagcaaaagatatgaccaagggatttttgagtttggagtcgcatcacccatgtttgtgcctctaacatcggctgccattgtcaacttggctgcatttgcttggggacatgtagaggctttcaaaggcagcaatggcttggaggggatgttcttacagatgtttatagctggttttggcgttgtgaattgtataccaatttatgaagccatcatcagtaggagtgacaaagggagaattcctacaaaaacgattatggtttcattactcttagctttttctctttatgtagtggcttatgttactctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

181

Amino Acids

20.3

Weight (kDa)

5.29

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23990 AT4G23990 AT4G24000 AT4G24000 AT4G24010
fragaria_vesca	FvH4_5g11680
malus_domestica	MD14G1132000.v1.1 MD14G1132200.v1.1 MD14G1132300.v1.1
prunus_persica	Prupe.5G123500_v2.0.a1 Prupe.5G123600_v2.0.a1 Prupe.5G123700_v2.0.a1 Prupe.5G123800_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1
pyrus_communis	pycom06g10420
rosa_chinensis	RchiOBHm_Chr7g0186101
rosa_laevigata	RLG00000004864
rosa_multiflora	Rmu_co8339917.1_g000001 Rmu_sc0000194.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268430
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069600 Rh7BG085500 Rh7CG078600 Rh7DG078600
rosa_wichuraiana	Rw7G006540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AclWI	GGATC	4 cut(s)	39, 52, 150, 163
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	2 cut(s)	26, 167
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	205, 358
AloI	GAACNNNNNNTCC	2 cut(s)	368, 400
AluBI	AGCT	2 cut(s)	404, 509
AluI	AGCT	2 cut(s)	404, 509
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	4 cut(s)	39, 52, 150, 163
ApeKI	GCWGC	3 cut(s)	308, 326, 363
ApoI	RAATTY	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	136
BamHI	GGATCC	2 cut(s)	44, 155
BbsI	GAAGAC	2 cut(s)	22, 237
BbvI	GCAGC	3 cut(s)	295, 313, 375
BccI	CCATC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	2 cut(s)	65, 213
BisI	GCNGC	3 cut(s)	309, 327, 364
BlsI	GCNGC	3 cut(s)	310, 328, 365
BmiI	GGNNCC	3 cut(s)	9, 46, 157
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	22, 237
BsaJI	CCNNGG	4 cut(s)	11, 180, 196, 253
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	11, 180, 196, 253
BseGI	GGATG	3 cut(s)	129, 140, 387
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	295, 313, 375
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	44, 155
Bsp19I	CCATGG	2 cut(s)	11, 196
BspLI	GGNNCC	3 cut(s)	9, 46, 157
BspPI	GGATC	4 cut(s)	39, 52, 150, 163
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	4 cut(s)	11, 180, 196, 253
BssMI	GATC	2 cut(s)	44, 155
BssNAI	GTATAC	1 cut(s)	428
BssT1I	CCWWGG	4 cut(s)	11, 180, 196, 253
Bst1107I	GTATAC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	505
BstDSI	CCRYGG	2 cut(s)	11, 196
BstF5I	GGATG	3 cut(s)	129, 140, 387
BstKTI	GATC	2 cut(s)	47, 158
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	44, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 369
BstNSI	RCATGY	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	295, 313, 375
BstV2I	GAAGAC	2 cut(s)	22, 237
BstX2I	RGATCY	2 cut(s)	44, 155
BstXI	CCANNNNNNTGG	1 cut(s)	102
BstYI	RGATCY	2 cut(s)	44, 155
BstZ17I	GTATAC	1 cut(s)	428
BtgI	CCRYGG	2 cut(s)	11, 196
BtsCI	GGATG	3 cut(s)	129, 140, 387
Csp6I	GTAC	2 cut(s)	25, 166
CspCI	CAANNNNNGTGG	2 cut(s)	101, 136
CviAII	CATG	5 cut(s)	12, 175, 197, 286, 344
CviJI	RGCY	9 cut(s)	10, 308, 326, 353, 372, 404, 443, 509, 530
CviKI_1	RGCY	9 cut(s)	10, 308, 326, 353, 372, 404, 443, 509, 530
CviQI	GTAC	2 cut(s)	25, 166
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	2 cut(s)	46, 157
DpnII	GATC	2 cut(s)	44, 155
Eco130I	CCWWGG	4 cut(s)	11, 180, 196, 253
EcoRI	GAATTC	1 cut(s)	471
EcoT14I	CCWWGG	4 cut(s)	11, 180, 196, 253
ErhI	CCWWGG	4 cut(s)	11, 180, 196, 253
FaeI	CATG	5 cut(s)	15, 178, 200, 289, 347
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	5 cut(s)	11, 174, 196, 285, 343
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	309, 327, 364
FokI	GGATG	3 cut(s)	127, 136, 394
Fsp4HI	GCNGC	3 cut(s)	309, 327, 364
FspBI	CTAG	2 cut(s)	65, 213
GluI	GCNGC	3 cut(s)	309, 327, 364
Hin1II	CATG	5 cut(s)	15, 178, 200, 289, 347
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	273
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	319, 428
Hpy188I	TCNGA	1 cut(s)	7
Hpy8I	GTNNAC	2 cut(s)	319, 428
HpyAV	CCTTC	3 cut(s)	74, 154, 179
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 369
HpyF3I	CTNAG	1 cut(s)	505
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	15, 178, 200, 289, 347
Kzo9I	GATC	2 cut(s)	44, 155
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	1 cut(s)	390
Lsp1109I	GCAGC	3 cut(s)	295, 313, 375
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	65, 213
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	208, 458, 535
MalI	GATC	2 cut(s)	46, 157
MboI	GATC	2 cut(s)	44, 155
MboII	GAAGA	2 cut(s)	22, 242
MflI	RGATCY	2 cut(s)	44, 155
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	421, 432, 471
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	77, 306, 343, 370
MseI	TTAA	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	332, 369
NcoI	CCATGG	2 cut(s)	11, 196
NdeII	GATC	2 cut(s)	44, 155
NlaIII	CATG	5 cut(s)	15, 178, 200, 289, 347
NlaIV	GGNNCC	3 cut(s)	9, 46, 157
NmuCI	GTSAC	2 cut(s)	208, 458
NspI	RCATGY	1 cut(s)	347
PciI	ACATGT	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	310, 328, 365
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	9, 46, 157
PsuI	RGATCY	2 cut(s)	44, 155
RsaI	GTAC	2 cut(s)	26, 167
RsaNI	GTAC	2 cut(s)	25, 166
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	3 cut(s)	309, 327, 364
Sau3AI	GATC	2 cut(s)	44, 155
SchI	GAGTC	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	30, 171, 406, 511
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	421, 432, 471
SspMI	CTAG	2 cut(s)	65, 213
StyI	CCWWGG	4 cut(s)	11, 180, 196, 253
TaiI	ACGT	1 cut(s)	30
TasI	AATT	3 cut(s)	421, 432, 471
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	208, 458
TseI	GCWGC	3 cut(s)	308, 326, 363
Tsp45I	GTSAC	2 cut(s)	208, 458
TspDTI	ATGAA	4 cut(s)	28, 243, 453, 486
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	2 cut(s)	65, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.