Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004643

Physical Location & Seq

Genomic Coordinates Forward (+)

12234373 .. 12235953

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATTGAGCAGATTCTTTTGGACAATAGCAAGGACAAGGACATCACAGAACAGTCGATGTCAAACCTAATATACGTGTCGAGAGAAAAACGCAGGACATCACCCCACCATTTTAAAACTGGTGCCCTTAATGACCTTCTTCGAGTTTCAGCCACCATGACCAATGCTCCAACAATCTTGACTCTAGACTGTGACACCTACTCTAATGACCCTCAAACACCCCATCATGCCCTATGTTACTTACCAGACCCCAAATTTCGATCCAAATTAGAGTTTCTGCAGTTTCCTCAGCGTTTTCATGGCATCAACAAGAAGGACGTATACGCATGTGAGCACAAACGTTTGTACAAAATTAACTCTTTCGGAATACGGGCGATTGGGACCAAATTATTTAGGAACATGATAAGGGTTTTCTTTGGCGGCCCCTCACATCTTTTACTTCCTGAAATGCCCCAACTTGGTCAAAACAATGTTGTGGACAAACCCATTCAGTCTCAAGAGGTTCTGGAATTGGCTCACCATGTTGCCGGTTGCAACTATGAGAAGAATACCACTTGGGGCTTAAAGATTGGTGTAAGATATGGCTTACTTGAGGTGGCTTTCTCCAAGCATAGTCCAATTACACACGGCACTCTGGCCATGGGCCCTTTCATGGGCCTTGCTTATGCTCAGTATGCATTTTGGCCCATTTGGTCTATTTCGTTCACCATATACGCCTTCCTTCTCCAACTGGCTTTCCTCAATGGACTCACTATATTTCCAAAAATAAATAAGAAATGTTCTATTGTTTCAAATCCATGGTTTCTCTTGTATGTGTATCTTTGTATCGGAGCCTACGGTCAAGATCTCCTAGATTTTTTGTTAGCTGGGGGAACATTCCATAGGTGGTGGAATGACCAAAGGATGTGGATGATTAGGGGACTTTCAAGCTTCTTGTTTGGAACCATTGAGTTCTCTCTTAAATCCTTAGGCATTGCCTCGCATGGGTTCAATGTGACAAGCAAAGTCCTTGACGAGGACCAAAGCAAAAGATACGAACAAGGAAGCATTGAGTTTGGAGTCTCATCACCCTTGTTTGTGACCCTAACAATGGCTGCCATTGTCAACTTGGTTGCCTTTGCTTGGGGGAATGTAGAGCTTATCAGAGGCAGCAATAGAAGACGGAAGCCAGTTACATCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

395

Amino Acids

44.85

Weight (kDa)

9.35

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23990 AT4G23990 AT4G24000 AT4G24000 AT4G24010
fragaria_vesca	FvH4_5g11680
malus_domestica	MD14G1132000.v1.1 MD14G1132200.v1.1 MD14G1132300.v1.1
prunus_persica	Prupe.5G123500_v2.0.a1 Prupe.5G123600_v2.0.a1 Prupe.5G123700_v2.0.a1 Prupe.5G123800_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1
pyrus_communis	pycom06g10420
rosa_chinensis	RchiOBHm_Chr7g0186101
rosa_laevigata	RLG00000004864
rosa_multiflora	Rmu_co8339917.1_g000001 Rmu_sc0000194.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268430
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069600 Rh7BG085500 Rh7CG078600 Rh7DG078600
rosa_wichuraiana	Rw7G006540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	1 cut(s)	420
AclI	AACGTT	1 cut(s)	340
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	7 cut(s)	458, 652, 653, 984, 1015, 1090, 1122
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	792, 927, 991
AluBI	AGCT	3 cut(s)	866, 930, 1138
AluI	AGCT	3 cut(s)	866, 930, 1138
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	498, 1066
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	5 cut(s)	421, 636, 643, 655, 683
ApaI	GGGCCC	1 cut(s)	647
ApeKI	GCWGC	2 cut(s)	1094, 1149
ApoI	RAATTY	1 cut(s)	254
AspS9I	GGNCC	7 cut(s)	381, 422, 643, 644, 655, 684, 1018
AsuHPI	GGTGA	4 cut(s)	93, 509, 697, 1059
AvaII	GGWCC	2 cut(s)	381, 1018
AxyI	CCTNAGG	1 cut(s)	967
BaeGI	GKGCMC	2 cut(s)	127, 647
BalI	TGGCCA	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	647
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	1165
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	1081, 1161
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	498, 1066
BfaI	CTAG	2 cut(s)	185, 851
BfmI	CTRYAG	1 cut(s)	278
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	3 cut(s)	421, 1095, 1150
BlsI	GCNGC	3 cut(s)	422, 1096, 1151
Bme18I	GGWCC	2 cut(s)	381, 1018
BmgT120I	GGNCC	7 cut(s)	381, 422, 643, 644, 655, 684, 1018
BmiI	GGNNCC	6 cut(s)	124, 382, 424, 645, 832, 943
BmsI	GCATC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	1165
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	480, 611
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	639, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	7 cut(s)	458, 652, 653, 984, 1015, 1090, 1122
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	3 cut(s)	124, 735, 1169
Bse21I	CCTNAGG	1 cut(s)	967
Bse3DI	GCAATG	1 cut(s)	972
BseDI	CCNNGG	2 cut(s)	639, 797
BseGI	GGATG	2 cut(s)	909, 915
BseLI	CCNNNNNNNGG	7 cut(s)	458, 652, 653, 984, 1015, 1090, 1122
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	302, 683
BseNI	ACTGG	3 cut(s)	124, 735, 1169
BseSI	GKGCMC	2 cut(s)	127, 647
BseXI	GCAGC	2 cut(s)	1081, 1161
BseYI	CCCAGC	1 cut(s)	866
BshFI	GGCC	5 cut(s)	423, 638, 645, 657, 685
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	394, 933
BslI	CCNNNNNNNGG	7 cut(s)	458, 652, 653, 984, 1015, 1090, 1122
BsmAI	GTCTC	2 cut(s)	498, 1066
BsmFI	GGGAC	2 cut(s)	394, 933
BsnI	GGCC	5 cut(s)	423, 638, 645, 657, 685
Bsp120I	GGGCCC	1 cut(s)	643
Bsp1286I	GDGCHC	3 cut(s)	127, 336, 647
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	260, 844
Bsp19I	CCATGG	2 cut(s)	639, 797
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	5 cut(s)	423, 638, 645, 657, 685
BspCNI	CTCAG	2 cut(s)	301, 682
BspLI	GGNNCC	6 cut(s)	124, 382, 424, 645, 832, 943
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	972
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	3 cut(s)	124, 735, 1169
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	639, 797
BssMI	GATC	2 cut(s)	260, 844
BssNAI	GTATAC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	639, 797
Bst1107I	GTATAC	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	54, 191, 839
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	288, 669, 967
BstDSI	CCRYGG	2 cut(s)	639, 797
BstENI	CCTNNNNNAGG	1 cut(s)	1013
BstF5I	GGATG	2 cut(s)	909, 915
BstKTI	GATC	2 cut(s)	263, 847
BstMAI	GTCTC	2 cut(s)	498, 1066
BstMBI	GATC	2 cut(s)	260, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	2 cut(s)	127, 647
BstV1I	GCAGC	2 cut(s)	1081, 1161
BstV2I	GAAGAC	1 cut(s)	1165
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BstZ17I	GTATAC	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	967
BsuRI	GGCC	5 cut(s)	423, 638, 645, 657, 685
BtgI	CCRYGG	2 cut(s)	639, 797
BtsCI	GGATG	2 cut(s)	909, 915
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	7 cut(s)	381, 422, 643, 644, 655, 684, 1018
Csp6I	GTAC	1 cut(s)	346
CspCI	CAANNNNNGTGG	2 cut(s)	887, 922
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	288, 669, 967
DpnI	GATC	2 cut(s)	262, 846
DpnII	GATC	2 cut(s)	260, 844
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	636
Eco130I	CCWWGG	2 cut(s)	639, 797
Eco24I	GRGCYC	1 cut(s)	647
Eco47I	GGWCC	2 cut(s)	381, 1018
Eco81I	CCTNAGG	1 cut(s)	967
EcoNI	CCTNNNNNAGG	1 cut(s)	1013
EcoO109I	RGGNCCY	1 cut(s)	644
EcoT14I	CCWWGG	2 cut(s)	639, 797
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	2 cut(s)	639, 797
FaqI	GGGAC	2 cut(s)	394, 933
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	421, 1095, 1150
FokI	GGATG	2 cut(s)	916, 922
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	421, 1095, 1150
FspBI	CTAG	2 cut(s)	185, 851
GluI	GCNGC	3 cut(s)	421, 1095, 1150
GsaI	CCCAGC	1 cut(s)	870
HaeIII	GGCC	5 cut(s)	423, 638, 645, 657, 685
HapII	CCGG	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	4 cut(s)	13, 181, 747, 1059
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	4 cut(s)	93, 509, 697, 1059
Hpy166II	GTNNAC	4 cut(s)	322, 478, 705, 1105
Hpy188I	TCNGA	3 cut(s)	365, 830, 1145
Hpy188III	TCNNGA	7 cut(s)	81, 178, 185, 443, 497, 506, 842
Hpy8I	GTNNAC	4 cut(s)	322, 478, 705, 1105
HpyAV	CCTTC	4 cut(s)	146, 307, 727, 731
HpyCH4III	ACNGT	3 cut(s)	54, 191, 839
HpyCH4IV	ACGT	3 cut(s)	75, 318, 340
HpyCH4V	TGCA	3 cut(s)	280, 534, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	3 cut(s)	288, 669, 967
HpySE526I	ACGT	3 cut(s)	75, 318, 340
Kzo9I	GATC	2 cut(s)	260, 844
LmnI	GCTCC	2 cut(s)	172, 830
LpnPI	CCDG	9 cut(s)	79, 105, 258, 456, 491, 541, 620, 716, 852
Lsp1109I	GCAGC	2 cut(s)	1081, 1161
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	185, 851
MaeII	ACGT	3 cut(s)	75, 318, 340
MaeIII	GTNAC	5 cut(s)	191, 236, 994, 1078, 1171
MalI	GATC	2 cut(s)	262, 846
MboI	GATC	2 cut(s)	260, 844
MboII	GAAGA	3 cut(s)	131, 556, 1170
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	3 cut(s)	127, 336, 647
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	6 cut(s)	254, 266, 351, 386, 509, 618
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	3 cut(s)	175, 741, 1068
MmeI	TCCRAC	2 cut(s)	194, 751
MnlI	CCTC	9 cut(s)	222, 297, 436, 493, 586, 749, 988, 1009, 1139
Mox20I	TGGCCA	1 cut(s)	638
Mph1103I	ATGCAT	1 cut(s)	679
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	5 cut(s)	114, 129, 354, 563, 960
MslI	CAYNNNNRTG	1 cut(s)	1180
Msp20I	TGGCCA	1 cut(s)	638
MspI	CCGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	674
NcoI	CCATGG	2 cut(s)	639, 797
NdeII	GATC	2 cut(s)	260, 844
NlaIV	GGNNCC	6 cut(s)	124, 382, 424, 645, 832, 943
NmuCI	GTSAC	3 cut(s)	191, 994, 1078
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	422, 1096, 1151
PleI	GAGTC	3 cut(s)	175, 741, 1067
PpsI	GAGTC	3 cut(s)	175, 741, 1067
Ppu21I	YACGTR	1 cut(s)	76
Psp1406I	AACGTT	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	866
PspN4I	GGNNCC	6 cut(s)	124, 382, 424, 645, 832, 943
PspOMI	GGGCCC	1 cut(s)	643
PspPI	GGNCC	7 cut(s)	381, 422, 643, 644, 655, 684, 1018
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	844
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	1180
SaqAI	TTAA	5 cut(s)	114, 129, 354, 563, 960
SatI	GCNGC	3 cut(s)	421, 1095, 1150
Sau3AI	GATC	2 cut(s)	260, 844
Sau96I	GGNCC	7 cut(s)	381, 422, 643, 644, 655, 684, 1018
SchI	GAGTC	3 cut(s)	175, 741, 1068
SduI	GDGCHC	3 cut(s)	127, 336, 647
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	381, 1018
SmiMI	CAYNNNNRTG	1 cut(s)	1180
SmlI	CTYRAG	2 cut(s)	495, 590
SmoI	CTYRAG	2 cut(s)	495, 590
Sse9I	AATT	6 cut(s)	254, 266, 351, 386, 509, 618
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	185, 851
StyI	CCWWGG	2 cut(s)	639, 797
TaaI	ACNGT	3 cut(s)	54, 191, 839
TaiI	ACGT	3 cut(s)	78, 321, 343
TaqI	TCGA	4 cut(s)	56, 80, 142, 259
TasI	AATT	6 cut(s)	254, 266, 351, 386, 509, 618
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	5 cut(s)	114, 129, 354, 563, 960
Tru9I	TTAA	5 cut(s)	114, 129, 354, 563, 960
TseFI	GTSAC	3 cut(s)	191, 994, 1078
TseI	GCWGC	2 cut(s)	1094, 1149
Tsp45I	GTSAC	3 cut(s)	191, 994, 1078
TspDTI	ATGAA	2 cut(s)	287, 640
TspGWI	ACGGA	1 cut(s)	1177
VpaK11BI	GGWCC	2 cut(s)	381, 1018
XagI	CCTNNNNNAGG	1 cut(s)	1013
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	2 cut(s)	116, 1105
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	2 cut(s)	185, 851
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.