Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004643

Physical Location & Seq

Genomic Coordinates Forward (+)

12232626 .. 12233233

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAAGACTCAAACTTTCCAGCACTGGACGTGTTCATATGCAATGCTGATCCGGACAAGGAGCCGCCAATGAACGTAGTGAACACGGCCTTATCGGTCATGGCTTATGATTACCCGACCGACAAGGTATCGGTGTATGTTTCGGACGAGTGCGGCTCGGCTCTGACTCTCTTTGCTTTCGTGGAGTCTTCCAAGTTTGCAAGGCACTGGTTGCTTTTTGTAGAAAGAACAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

79

Amino Acids

8.81

Weight (kDa)

4.39

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23990 AT4G23990 AT4G24000 AT4G24000 AT4G24010
fragaria_vesca	FvH4_5g11680
malus_domestica	MD14G1132000.v1.1 MD14G1132200.v1.1 MD14G1132300.v1.1
prunus_persica	Prupe.5G123500_v2.0.a1 Prupe.5G123600_v2.0.a1 Prupe.5G123700_v2.0.a1 Prupe.5G123800_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1 Prupe.5G124000_v2.0.a1
pyrus_communis	pycom06g10420
rosa_chinensis	RchiOBHm_Chr7g0186101
rosa_laevigata	RLG00000004864
rosa_multiflora	Rmu_co8339917.1_g000001 Rmu_sc0000194.1_g000028
rosa_roxburghii	Rroxscaffold_3G00268430
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069600 Rh7BG085500 Rh7CG078600 Rh7DG078600
rosa_wichuraiana	Rw7G006540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	2 cut(s)	65, 153
AclWI	GGATC	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	30
AjiI	CACGTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	12, 180
BceAI	ACGGC	1 cut(s)	102
BisI	GCNGC	2 cut(s)	65, 154
BlsI	GCNGC	2 cut(s)	66, 155
BmgBI	CACGTC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	63
BpiI	GAAGAC	2 cut(s)	12, 180
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BsaWI	WCCGGW	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	30, 212
Bse3DI	GCAATG	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	30, 212
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	65, 153
BspANI	GGCC	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	30, 212
BssMI	GATC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstV2I	GAAGAC	2 cut(s)	12, 180
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	23, 205
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	64, 89, 104, 156, 161
CviKI_1	RGCY	5 cut(s)	64, 89, 104, 156, 161
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
FaeI	CATG	1 cut(s)	103
FaiI	YATR	5 cut(s)	38, 40, 101, 108, 138
FatI	CATG	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	65, 154
Fsp4HI	GCNGC	2 cut(s)	65, 154
GluI	GCNGC	2 cut(s)	65, 154
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	3 cut(s)	8, 166, 185
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	145, 165
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	30, 75
HpyCH4V	TGCA	2 cut(s)	42, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpySE526I	ACGT	2 cut(s)	30, 75
Hsp92II	CATG	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	11, 33, 66, 193
MaeII	ACGT	2 cut(s)	30, 75
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	17, 180
MlyI	GAGTC	3 cut(s)	2, 160, 194
MroI	TCCGGA	1 cut(s)	52
MspI	CCGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	66, 155
PleI	GAGTC	3 cut(s)	2, 160, 193
PpsI	GAGTC	3 cut(s)	2, 160, 193
PspN4I	GGNNCC	1 cut(s)	63
SatI	GCNGC	2 cut(s)	65, 154
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	3 cut(s)	2, 160, 194
SetI	ASST	3 cut(s)	33, 78, 129
SsiI	CCGC	2 cut(s)	65, 153
TaiI	ACGT	2 cut(s)	33, 78
TaqII	GACCGA	2 cut(s)	85, 134
TauI	GCSGC	2 cut(s)	67, 156
TscAI	CASTG	2 cut(s)	30, 212
TspDTI	ATGAA	2 cut(s)	25, 86
TspRI	CASTG	2 cut(s)	30, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.