MD14G1196000.v1.1

Dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
28641780 .. 28646257
4478 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1196000.v1.1.491

Sequence Viewer

Length: 1407 bp
ATGAACAGGATTCTGGTTTCAAGAGAACTCAGAGCCAGAGCCCCGCAAACTGCCTTGAGCTGGTTCAGTTCACTCAACCTCTCAAGATCTATTCACGGGGTACCCTTTGCAACTGTTGAAGTGGAAGAGATATCGGGATCACAGCCTGCTGAAGTTCTCAACTTGGTGCAGGGTAAATGGAAGAACACTGATAGATGGAACACAATTTTGGATCCTTTAAATGGGGAGCCATTCATTAGAGTCTGCGAAGTTGATGAAACAGGAATTCAGCCATTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTTCACAATCCGTTCAAAGCACCAGAGAGGTATCTTATGTTGGGGGACATATCTGCAAAGGCAGGTCACATGCTTTCCTTGCCAAAGGTTTCTGATTTCTTCACAAGATTAATACAAAGGGTTGCTCCAAAGAGTTACCAGCAGGCTTCTGGTGAAGTTTATGTTACTCAAAAATTTCTGGAGAATTTCTCTGCTGATCAGGTCCGCTTCCTTGCAAGGTCTTTCGGGGTGCCTGGAAATCATCTTGGACAGCAAAGTCATGGTTTCCGTTGGCCTTATGGTCCTGTTGCAATCATTACTCCCTTTAATTTTCCACTAGAAATTCCTGTACTTCAGTTGATGGGTGCACTTTATATGGGTAACAAACCAGTCCTCAAAGTCGATAGCAAGGTATGCATTGTCATGGAGCAAATGATGAGGCTGCTTCATTACTGTGGGCTACCGACAGAGGATGTTGACTTCATAAATTCTGATGGGAAGACAATGAACAAGCTACTATCGGAGGGCAATCCACGAATGACCCTTTTCACGGGTAGCTCAAGAGTGGCAGATAAGTTGGCTGGTGACCTGAAGGGCCGTGTTAAGTTGGAAGATGCAGGATTTGACTGGAAGATCTTAGGGCCTGACGTTCAGGAGGAAGACTACGTTGCATGGGTCTGTGATCAGGATGCATATGCGTGCAGTGGTCAGAAATGCTCTGCGCAATCGATGCTCTTCATGCATGAGAACTGGTCTAAGACGTCAATTCTATCCAAAATGAAAGATCTGGCTGAGAGAAGGAACTTAGAAGACTTAACGATTGGCCCTGTCCTTACATTCACGACTGAAGCAATGCTAGAACACAAGAATAAATTGCTTCAGATACCCGGTTCAAAGCTACTCTTTGGGGGCGAACCTTTGACGGATCATTCCATTCCACCTGTATATGGTGCTATAAAACCTACAGCCGTTTATGTTCCACTTGAAGAAATACTGAAGGAAAAGAATTATGAACTCGTAACAAGAGAAATTTTTGGGCCATTTCAGGTAACAAAGAAAAGACATGCTGTTAAAAGAGACCAACCCCAGCCCATCCTACACAAAACTAGAAACTTCTAG

Protein Analysis

469

Amino Acids

52.73

Weight (kDa)

8.32

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 133 - 444 9.1e-32 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 564
AatII GACGTC 1 cut(s) 1052
Acc16I TGCGCA 1 cut(s) 1011
Acc36I ACCTGC 1 cut(s) 362
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 2 cut(s) 100, 538
AciI CCGC 2 cut(s) 44, 514
AclWI GGATC 4 cut(s) 145, 206, 219, 1221
AcsI RAATTY 6 cut(s) 264, 482, 493, 630, 775, 1317
AcuI CTGAAG 6 cut(s) 171, 626, 899, 1151, 1155, 1304
AcyI GRCGYC 1 cut(s) 1049
AfaI GTAC 2 cut(s) 102, 639
AfiI CCNNNNNNNGG 5 cut(s) 60, 221, 305, 838, 1235
AgsI TTSAA 5 cut(s) 21, 119, 325, 1182, 1274
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 5 cut(s) 60, 285, 802, 846, 1186
AluI AGCT 5 cut(s) 60, 285, 802, 846, 1186
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 1 cut(s) 1359
Alw44I GTGCAC 1 cut(s) 654
AlwI GGATC 4 cut(s) 145, 206, 219, 1221
AoxI GGCC 5 cut(s) 581, 883, 929, 1111, 1325
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 6 cut(s) 264, 482, 493, 630, 775, 1317
AseI ATTAAT 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 6 cut(s) 511, 590, 883, 929, 1112, 1325
AsuC2I CCSGG 1 cut(s) 1176
AsuHPI GGTGA 2 cut(s) 473, 884
AvaII GGWCC 2 cut(s) 511, 590
BaeGI GKGCMC 2 cut(s) 299, 658
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 2 cut(s) 100, 538
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 4 cut(s) 302, 794, 954, 1104
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 1 cut(s) 717
BccI CCATC 4 cut(s) 189, 643, 776, 1388
BceAI ACGGC 2 cut(s) 870, 1241
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 2 cut(s) 505, 970
BcnI CCSGG 1 cut(s) 1176
BcoDI GTCTC 1 cut(s) 1359
BfaI CTAG 4 cut(s) 626, 1145, 1395, 1405
BfmI CTRYAG 1 cut(s) 1251
BfuAI ACCTGC 1 cut(s) 362
BglII AGATCT 3 cut(s) 86, 921, 1072
BisI GCNGC 1 cut(s) 731
BlsI GCNGC 1 cut(s) 732
Bme1390I CCNGG 2 cut(s) 543, 1176
Bme18I GGWCC 2 cut(s) 511, 590
BmgT120I GGNCC 6 cut(s) 511, 590, 883, 929, 1112, 1325
BmiI GGNNCC 4 cut(s) 102, 213, 228, 540
BmrFI CCNGG 2 cut(s) 543, 1176
BmsI GCATC 3 cut(s) 892, 967, 1008
BpiI GAAGAC 4 cut(s) 302, 794, 954, 1104
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BpmI CTGGAG 1 cut(s) 509
BpuEI CTTGAG 3 cut(s) 67, 76, 832
BpuMI CCSGG 1 cut(s) 1176
Bsa29I ATCGAT 1 cut(s) 1016
BsaHI GRCGYC 1 cut(s) 1049
BsaI GGTCTC 1 cut(s) 1359
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 221, 305, 838, 1235
Bse1I ACTGG 3 cut(s) 677, 920, 1043
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 1 cut(s) 543
BseCI ATCGAT 1 cut(s) 1016
BseGI GGATG 3 cut(s) 766, 982, 1380
BseLI CCNNNNNNNGG 5 cut(s) 60, 221, 305, 838, 1235
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 2 cut(s) 43, 1071
BseNI ACTGG 3 cut(s) 677, 920, 1043
BseSI GKGCMC 2 cut(s) 299, 658
BseXI GCAGC 1 cut(s) 717
BseYI CCCAGC 1 cut(s) 1374
BsgI GTGCAG 2 cut(s) 188, 1009
BshFI GGCC 5 cut(s) 583, 885, 931, 1113, 1327
BshNI GGYRCC 2 cut(s) 100, 538
BshVI ATCGAT 1 cut(s) 1016
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 1 cut(s) 1176
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 5 cut(s) 60, 221, 305, 838, 1235
BsmAI GTCTC 1 cut(s) 1359
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 5 cut(s) 583, 885, 931, 1113, 1327
Bso31I GGTCTC 1 cut(s) 1359
Bsp1286I GDGCHC 3 cut(s) 43, 299, 658
Bsp143I GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
BspACI CCGC 2 cut(s) 44, 514
BspANI GGCC 5 cut(s) 583, 885, 931, 1113, 1327
BspCNI CTCAG 2 cut(s) 42, 1072
BspDI ATCGAT 1 cut(s) 1016
BspLI GGNNCC 4 cut(s) 102, 213, 228, 540
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 4 cut(s) 145, 206, 219, 1221
BspQI GCTCTTC 1 cut(s) 1028
BspT107I GGYRCC 2 cut(s) 100, 538
BspTNI GGTCTC 1 cut(s) 1359
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 3 cut(s) 677, 920, 1043
BssMI GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
BssNI GRCGYC 1 cut(s) 1049
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 115, 743
Bst6I CTCTTC 2 cut(s) 120, 1028
BstACI GRCGYC 1 cut(s) 1049
BstAPI GCANNNNNTGC 2 cut(s) 702, 1018
BstC8I GCNNGC 3 cut(s) 147, 453, 988
BstDEI CTNAG 5 cut(s) 29, 925, 1044, 1080, 1093
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 3 cut(s) 766, 982, 1380
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 8 cut(s) 89, 140, 214, 508, 924, 973, 1075, 1216
BstMAI GTCTC 1 cut(s) 1359
BstMBI GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 388, 702, 1018, 1027
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 2 cut(s) 382, 1355
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 2 cut(s) 541, 1174
BstSFI CTRYAG 1 cut(s) 1251
BstSLI GKGCMC 2 cut(s) 299, 658
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 4 cut(s) 302, 794, 954, 1104
BstX2I RGATCY 4 cut(s) 86, 211, 921, 1072
BstYI RGATCY 4 cut(s) 86, 211, 921, 1072
Bsu15I ATCGAT 1 cut(s) 1016
BsuRI GGCC 5 cut(s) 583, 885, 931, 1113, 1327
BsuTUI ATCGAT 1 cut(s) 1016
BtsCI GGATG 3 cut(s) 766, 982, 1380
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 2 cut(s) 186, 997
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 147, 453, 988
CfoI GCGC 1 cut(s) 1012
Cfr13I GGNCC 6 cut(s) 511, 590, 883, 929, 1112, 1325
ClaI ATCGAT 1 cut(s) 1016
Csp6I GTAC 2 cut(s) 101, 638
CviAII CATG 8 cut(s) 305, 379, 569, 712, 960, 1027, 1031, 1352
CviQI GTAC 2 cut(s) 101, 638
DdeI CTNAG 5 cut(s) 29, 925, 1044, 1080, 1093
DpnI GATC 8 cut(s) 88, 139, 213, 507, 923, 972, 1074, 1215
DpnII GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
DraI TTTAAA 1 cut(s) 219
DrdI GACNNNNNNGTC 1 cut(s) 564
DseDI GACNNNNNNGTC 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 120, 1028
EarI CTCTTC 2 cut(s) 120, 1028
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 1359
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 511, 590
Eco57I CTGAAG 6 cut(s) 171, 626, 899, 1151, 1155, 1304
Eco91I GGTNACC 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 929
EcoO65I GGTNACC 1 cut(s) 872
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 541
EcoRV GATATC 1 cut(s) 132
EcoT22I ATGCAT 3 cut(s) 707, 982, 1032
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 8 cut(s) 308, 382, 572, 715, 963, 1030, 1034, 1355
FalI AAGNNNNNCTT 2 cut(s) 1175, 1207
FaqI GGGAC 1 cut(s) 368
FatI CATG 8 cut(s) 304, 378, 568, 711, 959, 1026, 1030, 1351
FauI CCCGC 1 cut(s) 51
FauNDI CATATG 1 cut(s) 982
FbaI TGATCA 2 cut(s) 505, 970
Fnu4HI GCNGC 1 cut(s) 731
FokI GGATG 3 cut(s) 773, 989, 1367
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 731
FspBI CTAG 4 cut(s) 626, 1145, 1395, 1405
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 1 cut(s) 731
GsaI CCCAGC 1 cut(s) 1378
GsuI CTGGAG 1 cut(s) 509
HaeIII GGCC 5 cut(s) 583, 885, 931, 1113, 1327
HapII CCGG 1 cut(s) 1176
HhaI GCGC 1 cut(s) 1012
Hin1I GRCGYC 1 cut(s) 1049
Hin1II CATG 8 cut(s) 308, 382, 572, 715, 963, 1030, 1034, 1355
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HinfI GANTC 2 cut(s) 10, 240
HpaII CCGG 1 cut(s) 1176
HphI GGTGA 2 cut(s) 473, 884
Hpy166II GTNNAC 3 cut(s) 71, 656, 766
Hpy188I TCNGA 6 cut(s) 32, 403, 781, 811, 999, 1170
Hpy188III TCNNGA 8 cut(s) 21, 84, 135, 488, 849, 941, 974, 1129
Hpy8I GTNNAC 3 cut(s) 71, 656, 766
HpyAV CCTTC 3 cut(s) 874, 1080, 1279
HpyCH4III ACNGT 2 cut(s) 115, 743
HpyCH4IV ACGT 3 cut(s) 936, 954, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 388, 702, 1018, 1027
HpyF3I CTNAG 5 cut(s) 29, 925, 1044, 1080, 1093
HpySE526I ACGT 3 cut(s) 936, 954, 1049
Hsp92I GRCGYC 1 cut(s) 1049
Hsp92II CATG 8 cut(s) 308, 382, 572, 715, 963, 1030, 1034, 1355
HspAI GCGC 1 cut(s) 1010
KpnI GGTACC 1 cut(s) 104
Ksp22I TGATCA 2 cut(s) 505, 970
Kzo9I GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
LguI GCTCTTC 1 cut(s) 1028
LmnI GCTCC 3 cut(s) 226, 439, 715
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 3 cut(s) 892, 967, 1008
MaeI CTAG 4 cut(s) 626, 1145, 1395, 1405
MaeII ACGT 3 cut(s) 936, 954, 1049
MaeIII GTNAC 7 cut(s) 374, 443, 472, 668, 872, 1306, 1336
MalI GATC 8 cut(s) 88, 139, 213, 507, 923, 972, 1074, 1215
MboI GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
MflI RGATCY 4 cut(s) 86, 211, 921, 1072
MhlI GDGCHC 3 cut(s) 43, 299, 658
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 876
MnlI CCTC 7 cut(s) 89, 330, 692, 720, 751, 805, 937
Mph1103I ATGCAT 3 cut(s) 707, 982, 1032
MseI TTAA 6 cut(s) 218, 419, 615, 891, 1103, 1359
MslI CAYNNNNRTG 3 cut(s) 710, 741, 985
MspI CCGG 1 cut(s) 1176
MspR9I CCNGG 2 cut(s) 543, 1176
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 4 cut(s) 388, 702, 1018, 1027
NciI CCSGG 1 cut(s) 1176
NdeI CATATG 1 cut(s) 982
NdeII GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
NlaIII CATG 8 cut(s) 308, 382, 572, 715, 963, 1030, 1034, 1355
NlaIV GGNNCC 4 cut(s) 102, 213, 228, 540
NmuCI GTSAC 2 cut(s) 374, 872
NsbI TGCGCA 1 cut(s) 1011
NsiI ATGCAT 3 cut(s) 707, 982, 1032
NspI RCATGY 2 cut(s) 382, 1355
PciSI GCTCTTC 1 cut(s) 1028
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 732
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 541
PspEI GGTNACC 1 cut(s) 872
PspFI CCCAGC 1 cut(s) 1374
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 102, 213, 228, 540
PspPI GGNCC 6 cut(s) 511, 590, 883, 929, 1112, 1325
PsuI RGATCY 4 cut(s) 86, 211, 921, 1072
RsaI GTAC 2 cut(s) 102, 639
RsaNI GTAC 2 cut(s) 101, 638
RseI CAYNNNNRTG 3 cut(s) 710, 741, 985
SapI GCTCTTC 1 cut(s) 1028
SaqAI TTAA 6 cut(s) 218, 419, 615, 891, 1103, 1359
SatI GCNGC 1 cut(s) 731
Sau3AI GATC 8 cut(s) 86, 137, 211, 505, 921, 970, 1072, 1213
Sau96I GGNCC 6 cut(s) 511, 590, 883, 929, 1112, 1325
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 543, 1176
SduI GDGCHC 3 cut(s) 43, 299, 658
SfaNI GCATC 3 cut(s) 892, 967, 1008
SfcI CTRYAG 1 cut(s) 1251
SinI GGWCC 2 cut(s) 511, 590
SmiMI CAYNNNNRTG 3 cut(s) 710, 741, 985
SmlI CTYRAG 3 cut(s) 55, 82, 847
SmoI CTYRAG 3 cut(s) 55, 82, 847
SsiI CCGC 2 cut(s) 44, 514
SspMI CTAG 4 cut(s) 626, 1145, 1395, 1405
StyD4I CCNGG 2 cut(s) 541, 1174
TaaI ACNGT 2 cut(s) 115, 743
TaiI ACGT 3 cut(s) 939, 957, 1052
TaqI TCGA 2 cut(s) 690, 1016
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 6 cut(s) 218, 419, 615, 891, 1103, 1359
Tru9I TTAA 6 cut(s) 218, 419, 615, 891, 1103, 1359
TscAI CASTG 2 cut(s) 193, 997
TseFI GTSAC 2 cut(s) 374, 872
TseI GCWGC 1 cut(s) 730
Tsp45I GTSAC 2 cut(s) 374, 872
TspDTI ATGAA 9 cut(s) 17, 223, 270, 725, 760, 809, 1015, 1082, 1314
TspGWI ACGGA 3 cut(s) 309, 566, 1226
TspRI CASTG 2 cut(s) 193, 997
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 511, 590
VspI ATTAAT 1 cut(s) 419
XapI RAATTY 6 cut(s) 264, 482, 493, 630, 775, 1317
XceI RCATGY 2 cut(s) 382, 1355
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 4 cut(s) 626, 1145, 1395, 1405
ZraI GACGTC 1 cut(s) 1050
Zsp2I ATGCAT 3 cut(s) 707, 982, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.